GSE53960: rat RNA-Seq transcriptomic Bodymap

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
E2f2 Links NCBI RGD Ensembl	ENSRNOG00000047741	E2F transcription factor 2
E2f5 Links NCBI RGD Ensembl	ENSRNOG00000010760	E2F transcription factor 5

Gene	Promoter	Pearson corr. coef.	P-value	Plot
E2f2	rn6_v1_chr5_+_154522119_154522119	0.83	5.4e-84	Click!
E2f5	rn6_v1_chr2_-_88366115_88366115	0.21	1.3e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_59153280 Show fit	206.46	ENSRNOT00000002066	Cdca7 Links NCBI RGD Ensembl Show fit	cell division cycle associated 7
chr6_+_43884678 Show fit	205.10	ENSRNOT00000091551	Rrm2 Links NCBI RGD Ensembl Show fit	ribonucleotide reductase regulatory subunit M2
chr20_+_20576377 Show fit	185.05	ENSRNOT00000000783 ENSRNOT00000086806	Cdk1 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 1
chr14_-_20953095 Show fit	183.40	ENSRNOT00000004440	Dck Links NCBI RGD Ensembl Show fit	deoxycytidine kinase
chr19_+_14523554 Show fit	170.60	ENSRNOT00000084271 ENSRNOT00000064731	Mcm5 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 5
chr13_-_45068077 Show fit	157.53	ENSRNOT00000004969	Mcm6 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 6
chr9_-_26932201 Show fit	156.83	ENSRNOT00000017081	Mcm3 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 3
chr17_+_44528125 Show fit	145.26	ENSRNOT00000084538	LOC680322 Links NCBI RGD Ensembl Show fit	similar to Histone H2A type 1
chr8_+_132032944 Show fit	142.64	ENSRNOT00000089278	Kif15 Links NCBI RGD Ensembl Show fit	kinesin family member 15
chr1_-_42467586 Show fit	141.33	ENSRNOT00000029416	Fbxo5 Links NCBI RGD Ensembl Show fit	F-box protein 5
chr5_+_144581427 Show fit	135.88	ENSRNOT00000015227	Clspn Links NCBI RGD Ensembl Show fit	claspin
chr12_-_52452040 Show fit	133.49	ENSRNOT00000067453	Pole Links NCBI RGD Ensembl Show fit	DNA polymerase epsilon, catalytic subunit
chr12_-_19314016 Show fit	132.92	ENSRNOT00000001825	Mcm7 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 7
chr3_-_105298108 Show fit	131.04	ENSRNOT00000010994	Arhgap11a Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 11A
chr17_-_44738330 Show fit	130.23	ENSRNOT00000072195	LOC100364835 Links NCBI RGD Ensembl Show fit	histone cluster 1, H2bd-like
chr17_+_42302540 Show fit	123.85	ENSRNOT00000025389	Gmnn Links NCBI RGD Ensembl Show fit	geminin, DNA replication inhibitor
chr17_+_44520537 Show fit	122.11	ENSRNOT00000077985	hist1h2ail2 Links NCBI RGD Ensembl Show fit	histone cluster 1, H2ai-like2
chr3_+_146695344 Show fit	118.22	ENSRNOT00000010955	Gins1 Links NCBI RGD Ensembl Show fit	GINS complex subunit 1
chr17_-_44527801 Show fit	116.84	ENSRNOT00000089643	Hist1h2bk Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member k
chr3_-_150073721 Show fit	105.97	ENSRNOT00000022428	E2f1 Links NCBI RGD Ensembl Show fit	E2F transcription factor 1
chr17_-_44520240 Show fit	105.90	ENSRNOT00000086538	Hist1h2bh Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member h
chr13_-_110257367 Show fit	104.98	ENSRNOT00000005576	Dtl Links NCBI RGD Ensembl Show fit	denticleless E3 ubiquitin protein ligase homolog
chr8_+_48665652 Show fit	104.13	ENSRNOT00000059715	H2afx Links NCBI RGD Ensembl Show fit	H2A histone family, member X
chr3_-_124884570 Show fit	103.85	ENSRNOT00000028887	Pcna Links NCBI RGD Ensembl Show fit	proliferating cell nuclear antigen
chr4_-_120840111 Show fit	103.53	ENSRNOT00000022231	Mcm2 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 2
chr3_+_110918243 Show fit	102.20	ENSRNOT00000056432	Rad51 Links NCBI RGD Ensembl Show fit	RAD51 recombinase
chr6_-_91518996 Show fit	101.15	ENSRNOT00000005835	Pole2 Links NCBI RGD Ensembl Show fit	DNA polymerase epsilon 2, accessory subunit
chr7_+_97984862 Show fit	97.06	ENSRNOT00000008508	Atad2 Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 2
chr10_+_67427066 Show fit	96.38	ENSRNOT00000035642	Atad5 Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 5
chr17_+_44738643 Show fit	92.72	ENSRNOT00000087643	LOC100910554 Links NCBI RGD Ensembl Show fit	histone H2A type 1-like
chr2_+_243105674 Show fit	91.53	ENSRNOT00000013919	H2afz Links NCBI RGD Ensembl Show fit	H2A histone family, member Z
chr6_+_144291974 Show fit	81.32	ENSRNOT00000035255	Ncapg2 Links NCBI RGD Ensembl Show fit	non-SMC condensin II complex, subunit G2
chr4_-_77347011 Show fit	80.03	ENSRNOT00000008149	Ezh2 Links NCBI RGD Ensembl Show fit	enhancer of zeste 2 polycomb repressive complex 2 subunit
chr17_+_44763598 Show fit	79.81	ENSRNOT00000079880	Hist1h3b Links NCBI RGD Ensembl Show fit	histone cluster 1, H3b
chr17_+_44748482 Show fit	72.66	ENSRNOT00000083765	Hist1h2bl Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member l
chr5_+_152681101 Show fit	72.20	ENSRNOT00000076052 ENSRNOT00000022574	Stmn1 Links NCBI RGD Ensembl Show fit	stathmin 1
chr6_-_36940868 Show fit	71.96	ENSRNOT00000006470	Gen1 Links NCBI RGD Ensembl Show fit	GEN1 Holliday junction 5' flap endonuclease
chr17_-_44748188 Show fit	68.03	ENSRNOT00000081970	LOC103690190 Links NCBI RGD Ensembl Show fit	histone H2A type 1-E
chr8_+_71514281 Show fit	67.68	ENSRNOT00000022256	Ns5atp9 Links NCBI RGD Ensembl Show fit	NS5A (hepatitis C virus) transactivated protein 9
chr17_-_1672021 Show fit	65.25	ENSRNOT00000036287	Zfp367 Links NCBI RGD Ensembl Show fit	zinc finger protein 367
chr8_-_21968415 Show fit	61.59	ENSRNOT00000067325 ENSRNOT00000064932	Dnmt1 Links NCBI RGD Ensembl Show fit	DNA methyltransferase 1
chr2_+_200187179 Show fit	56.37	ENSRNOT00000093564 ENSRNOT00000025718	Notch2 Links NCBI RGD Ensembl Show fit	notch 2
chr2_+_198390166 Show fit	54.54	ENSRNOT00000081042	Hist2h3c2 Links NCBI RGD Ensembl Show fit	histone cluster 2, H3c2
chr12_+_23151180 Show fit	51.77	ENSRNOT00000059486	Cux1 Links NCBI RGD Ensembl Show fit	cut-like homeobox 1
chr5_-_58455819 Show fit	49.46	ENSRNOT00000078082	Fancg Links NCBI RGD Ensembl Show fit	Fanconi anemia, complementation group G
chr1_+_221448661 Show fit	45.19	ENSRNOT00000072493	LOC100910252 Links NCBI RGD Ensembl Show fit	sororin-like
chr5_+_152721940 Show fit	45.13	ENSRNOT00000039322	Aunip Links NCBI RGD Ensembl Show fit	aurora kinase A and ninein interacting protein
chr9_+_93545396 Show fit	45.07	ENSRNOT00000025093	LOC100359583 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC100359583
chr15_+_83442144 Show fit	43.47	ENSRNOT00000039344	Bora Links NCBI RGD Ensembl Show fit	bora, aurora kinase A activator
chr9_-_78369031 Show fit	43.23	ENSRNOT00000087870	Bard1 Links NCBI RGD Ensembl Show fit	BRCA1 associated RING domain 1
chr10_+_45289741 Show fit	40.92	ENSRNOT00000066190	Hist3h2ba Links NCBI RGD Ensembl Show fit	histone cluster 3, H2ba
chr17_+_77224112 Show fit	38.71	ENSRNOT00000024178	Mcm10 Links NCBI RGD Ensembl Show fit	minichromosome maintenance 10 replication initiation factor
chr4_+_81244469 Show fit	38.64	ENSRNOT00000044407 ENSRNOT00000015828	Cbx3 Links NCBI RGD Ensembl Show fit	chromobox 3
chr8_+_117953444 Show fit	37.99	ENSRNOT00000028141	Cdc25a Links NCBI RGD Ensembl Show fit	cell division cycle 25A
chr8_+_111790678 Show fit	37.08	ENSRNOT00000013265	Topbp1 Links NCBI RGD Ensembl Show fit	topoisomerase (DNA) II binding protein 1
chr2_+_219628695 Show fit	37.04	ENSRNOT00000067324	Sass6 Links NCBI RGD Ensembl Show fit	SAS-6 centriolar assembly protein
chr1_+_198214797 Show fit	36.62	ENSRNOT00000068543	Tbx6 Links NCBI RGD Ensembl Show fit	T-box 6
chr10_+_13061170 Show fit	36.53	ENSRNOT00000004936	Pkmyt1 Links NCBI RGD Ensembl Show fit	protein kinase, membrane associated tyrosine/threonine 1
chrX_-_62698830 Show fit	36.52	ENSRNOT00000076359	Pola1 Links NCBI RGD Ensembl Show fit	DNA polymerase alpha 1, catalytic subunit
chr4_-_183426439 Show fit	36.26	ENSRNOT00000083310	Fam60a Links NCBI RGD Ensembl Show fit	family with sequence similarity 60, member A
chr1_+_274310153 Show fit	35.45	ENSRNOT00000054686	Smc3 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 3
chr4_-_170145262 Show fit	34.39	ENSRNOT00000074526	Hist1h4b Links NCBI RGD Ensembl Show fit	histone cluster 1, H4b
chr6_-_2886465 Show fit	33.41	ENSRNOT00000038448	Srsf7 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 7
chr7_-_94774569 Show fit	31.78	ENSRNOT00000036399	Dscc1 Links NCBI RGD Ensembl Show fit	DNA replication and sister chromatid cohesion 1
chr17_+_43734461 Show fit	31.55	ENSRNOT00000072564	Hist1h1d Links NCBI RGD Ensembl Show fit	histone cluster 1, H1d
chr8_-_33661049 Show fit	31.45	ENSRNOT00000068037	Fli1 Links NCBI RGD Ensembl Show fit	Fli-1 proto-oncogene, ETS transcription factor
chr9_-_119818310 Show fit	31.42	ENSRNOT00000019359	Smchd1 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes flexible hinge domain containing 1
chr15_+_4356261 Show fit	30.99	ENSRNOT00000009009	Dnajc9 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C9
chr6_+_11644578 Show fit	28.60	ENSRNOT00000021923 ENSRNOT00000093689	Msh6 Links NCBI RGD Ensembl Show fit	mutS homolog 6
chr16_+_41079444 Show fit	27.89	ENSRNOT00000015623	Neil3 Links NCBI RGD Ensembl Show fit	nei-like DNA glycosylase 3
chr4_+_49017311 Show fit	27.41	ENSRNOT00000007476	Ing3 Links NCBI RGD Ensembl Show fit	inhibitor of growth family, member 3
chr18_+_1866080 Show fit	26.47	ENSRNOT00000018646	Snrpd1 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein D1
chr1_+_274309758 Show fit	25.10	ENSRNOT00000019560	Smc3 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 3
chr4_+_34282625 Show fit	24.18	ENSRNOT00000011138 ENSRNOT00000086735	Glcci1 Links NCBI RGD Ensembl Show fit	glucocorticoid induced 1
chr19_-_9843673 Show fit	23.91	ENSRNOT00000015795	Gins3 Links NCBI RGD Ensembl Show fit	GINS complex subunit 3
chr6_+_93462852 Show fit	23.73	ENSRNOT00000089473	Arid4a Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 4A
chr4_-_34282351 Show fit	23.09	ENSRNOT00000011123	Rpa3 Links NCBI RGD Ensembl Show fit	replication protein A3
chr10_-_65424802 Show fit	23.06	ENSRNOT00000018468	Traf4 Links NCBI RGD Ensembl Show fit	Tnf receptor associated factor 4
chr8_+_117347029 Show fit	22.14	ENSRNOT00000047717	Impdh2 Links NCBI RGD Ensembl Show fit	inosine monophosphate dehydrogenase 2
chr15_+_45422010 Show fit	21.16	ENSRNOT00000012231	Rnaseh2b Links NCBI RGD Ensembl Show fit	ribonuclease H2, subunit B
chr1_-_198706852 Show fit	19.45	ENSRNOT00000024074	Dctpp1 Links NCBI RGD Ensembl Show fit	dCTP pyrophosphatase 1
chr2_+_211176556 Show fit	19.43	ENSRNOT00000055880	Psrc1 Links NCBI RGD Ensembl Show fit	proline and serine rich coiled-coil 1
chr1_+_142034423 Show fit	19.38	ENSRNOT00000090006	Ttll13 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase-like family, member 13
chrX_+_15171499 Show fit	19.23	ENSRNOT00000008399	Suv39h1l1 Links NCBI RGD Ensembl Show fit	suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1
chr15_-_58068892 Show fit	18.44	ENSRNOT00000044254	Gtf2f2 Links NCBI RGD Ensembl Show fit	general transcription factor IIF subunit 2
chr1_+_273563441 Show fit	18.07	ENSRNOT00000048691	RGD1561333 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L8
chr1_+_167538263 Show fit	17.90	ENSRNOT00000074058	Rrm1 Links NCBI RGD Ensembl Show fit	ribonucleotide reductase catalytic subunit M1
chr3_+_125470551 Show fit	17.74	ENSRNOT00000028898	Mcm8 Links NCBI RGD Ensembl Show fit	minichromosome maintenance 8 homologous recombination repair factor
chr7_-_34485034 Show fit	17.25	ENSRNOT00000007351	Snrpf Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide F
chr5_+_47853818 Show fit	17.18	ENSRNOT00000009228 ENSRNOT00000079656	Casp8ap2 Links NCBI RGD Ensembl Show fit	caspase 8 associated protein 2
chr11_+_89511191 Show fit	17.04	ENSRNOT00000002510	Mcm4 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 4
chr19_+_37600148 Show fit	16.86	ENSRNOT00000023853	Ctcf Links NCBI RGD Ensembl Show fit	CCCTC-binding factor
chr8_-_22111863 Show fit	16.60	ENSRNOT00000046983	Raver1 Links NCBI RGD Ensembl Show fit	ribonucleoprotein, PTB-binding 1
chr14_+_81488008 Show fit	16.23	ENSRNOT00000018477	Tnip2 Links NCBI RGD Ensembl Show fit	TNFAIP3 interacting protein 2
chr9_-_93377643 Show fit	15.27	ENSRNOT00000024712	Ncl Links NCBI RGD Ensembl Show fit	nucleolin
chr7_-_117703094 Show fit	14.99	ENSRNOT00000019754	Tonsl Links NCBI RGD Ensembl Show fit	tonsoku-like, DNA repair protein
chr17_+_17965881 Show fit	14.88	ENSRNOT00000021751	Dek Links NCBI RGD Ensembl Show fit	DEK proto-oncogene
chr7_+_27438351 Show fit	14.85	ENSRNOT00000077976	AABR07056503.1 Links NCBI RGD Ensembl Show fit
chr1_-_71399751 Show fit	14.76	ENSRNOT00000020787	Zfp444 Links NCBI RGD Ensembl Show fit	zinc finger protein 444
chr6_+_126636662 Show fit	14.55	ENSRNOT00000010739	Ubr7 Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3 component n-recognin 7 (putative)
chr17_-_82060123 Show fit	14.44	ENSRNOT00000025046	Nsun6 Links NCBI RGD Ensembl Show fit	NOP2/Sun RNA methyltransferase family member 6
chr20_+_46429222 Show fit	13.98	ENSRNOT00000076818	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr8_+_12355767 Show fit	13.88	ENSRNOT00000068445	Fam76b Links NCBI RGD Ensembl Show fit	family with sequence similarity 76, member B
chr1_+_167538744 Show fit	13.48	ENSRNOT00000093070	Rrm1 Links NCBI RGD Ensembl Show fit	ribonucleotide reductase catalytic subunit M1
chr14_-_60594844 Show fit	13.23	ENSRNOT00000005349	Pi4k2b Links NCBI RGD Ensembl Show fit	phosphatidylinositol 4-kinase type 2 beta
chr1_+_174767960 Show fit	13.14	ENSRNOT00000013362	Wee1 Links NCBI RGD Ensembl Show fit	WEE1 G2 checkpoint kinase
chr6_+_126636491 Show fit	12.58	ENSRNOT00000089601	Ubr7 Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3 component n-recognin 7 (putative)
chr20_+_6049286 Show fit	12.44	ENSRNOT00000042143 ENSRNOT00000092566	Brpf3 Links NCBI RGD Ensembl Show fit	bromodomain and PHD finger containing, 3
chr10_+_67325347 Show fit	12.06	ENSRNOT00000079002 ENSRNOT00000085914	Suz12 Links NCBI RGD Ensembl Show fit	suppressor of zeste 12 homolog (Drosophila)
chr4_+_170820594 Show fit	11.99	ENSRNOT00000032568	LOC500354 Links NCBI RGD Ensembl Show fit	similar to C030030A07Rik protein
chr16_+_7103998 Show fit	11.18	ENSRNOT00000016581	Pbrm1 Links NCBI RGD Ensembl Show fit	polybromo 1
chr6_+_36941596 Show fit	10.96	ENSRNOT00000083383	Smc6 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 6
chr16_-_7103604 Show fit	10.94	ENSRNOT00000033677	Gnl3 Links NCBI RGD Ensembl Show fit	G protein nucleolar 3
chrX_+_157353577 Show fit	10.74	ENSRNOT00000090596	Haus7 Links NCBI RGD Ensembl Show fit	HAUS augmin-like complex, subunit 7
chr14_-_44375804 Show fit	10.69	ENSRNOT00000042825	LOC100362751 Links NCBI RGD Ensembl Show fit	ribosomal protein P2-like
chr12_+_8085525 Show fit	10.56	ENSRNOT00000089804 ENSRNOT00000001234	Slc7a1 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 1
chr10_+_11206226 Show fit	10.54	ENSRNOT00000006979	Tfap4 Links NCBI RGD Ensembl Show fit	transcription factor AP-4
chr12_+_660011 Show fit	10.06	ENSRNOT00000040830	Pds5b Links NCBI RGD Ensembl Show fit	PDS5 cohesin associated factor B
chr9_+_81783349 Show fit	10.02	ENSRNOT00000021548	Cnot9 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex subunit 9
chr1_+_243477493 Show fit	9.67	ENSRNOT00000021779 ENSRNOT00000085356	Dmrt1 Links NCBI RGD Ensembl Show fit	doublesex and mab-3 related transcription factor 1
chr10_-_14324170 Show fit	9.55	ENSRNOT00000035513 ENSRNOT00000090587	Hn1l Links NCBI RGD Ensembl Show fit	hematological and neurological expressed 1-like
chr3_-_176791960 Show fit	9.46	ENSRNOT00000018237	Gmeb2 Links NCBI RGD Ensembl Show fit	glucocorticoid modulatory element binding protein 2
chr2_+_207108552 Show fit	9.44	ENSRNOT00000027234	Slc16a1 Links NCBI RGD Ensembl Show fit	solute carrier family 16 member 1
chr15_-_44627765 Show fit	9.18	ENSRNOT00000058887	Dock5 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 5
chr10_+_36098051 Show fit	9.07	ENSRNOT00000083971	Adamts2 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 2
chr1_-_128341240 Show fit	9.06	ENSRNOT00000070864 ENSRNOT00000072915	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr2_-_4195810 Show fit	8.72	ENSRNOT00000018457	Slf1 Links NCBI RGD Ensembl Show fit	SMC5-SMC6 complex localization factor 1
chr18_-_48720472 Show fit	8.68	ENSRNOT00000023236	Cep120 Links NCBI RGD Ensembl Show fit	centrosomal protein 120
chr6_+_132805794 Show fit	7.74	ENSRNOT00000006281	Wdr25 Links NCBI RGD Ensembl Show fit	WD repeat domain 25
chr1_-_265420503 Show fit	7.65	ENSRNOT00000072223	Fbxw4 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 4
chr3_+_38742072 Show fit	7.49	ENSRNOT00000006774	Arl6ip6 Links NCBI RGD Ensembl Show fit	ADP ribosylation factor like GTPase 6 interacting protein 6
chr3_-_117766120 Show fit	7.40	ENSRNOT00000056022	Fbn1 Links NCBI RGD Ensembl Show fit	fibrillin 1
chr5_+_154668179 Show fit	7.36	ENSRNOT00000015971	Hnrnpr Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein R
chr10_-_105795958 Show fit	7.24	ENSRNOT00000067739	Srsf2 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 2
chr5_-_16706909 Show fit	7.17	ENSRNOT00000011314	Rps20 Links NCBI RGD Ensembl Show fit	ribosomal protein S20
chr7_+_12006710 Show fit	7.15	ENSRNOT00000045421	Klf16 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 16
chrX_+_113510621 Show fit	6.58	ENSRNOT00000025912	Nxt2 Links NCBI RGD Ensembl Show fit	nuclear transport factor 2-like export factor 2
chr2_+_104854572 Show fit	6.42	ENSRNOT00000064828 ENSRNOT00000090912	Hltf Links NCBI RGD Ensembl Show fit	helicase-like transcription factor
chr3_-_59688692 Show fit	6.21	ENSRNOT00000078752	Sp3 Links NCBI RGD Ensembl Show fit	Sp3 transcription factor
chr19_-_52206310 Show fit	5.88	ENSRNOT00000087886	Mbtps1 Links NCBI RGD Ensembl Show fit	membrane-bound transcription factor peptidase, site 1
chr5_-_128186532 Show fit	5.86	ENSRNOT00000012635	Prpf38a Links NCBI RGD Ensembl Show fit	pre-mRNA processing factor 38A
chr4_+_62299044 Show fit	5.83	ENSRNOT00000032077	Agbl3 Links NCBI RGD Ensembl Show fit	ATP/GTP binding protein-like 3
chr11_+_86329012 Show fit	5.81	ENSRNOT00000072027	Cdc45 Links NCBI RGD Ensembl Show fit	cell division cycle 45
chr10_-_109757550 Show fit	5.76	ENSRNOT00000054957	Arhgdia Links NCBI RGD Ensembl Show fit	Rho GDP dissociation inhibitor alpha
chr5_-_173659675 Show fit	5.72	ENSRNOT00000027547	Klhl17 Links NCBI RGD Ensembl Show fit	kelch-like family member 17
chr1_-_82546937 Show fit	5.52	ENSRNOT00000028100	Hnrnpul1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein U-like 1
chr14_-_86706626 Show fit	5.52	ENSRNOT00000082893	H2afv Links NCBI RGD Ensembl Show fit	H2A histone family, member V
chr13_+_48679774 Show fit	5.38	ENSRNOT00000075674	Nucks1 Links NCBI RGD Ensembl Show fit	nuclear casein kinase and cyclin-dependent kinase substrate 1
chr11_-_86276430 Show fit	5.24	ENSRNOT00000075164	Hira Links NCBI RGD Ensembl Show fit	histone cell cycle regulator
chr6_-_103935122 Show fit	5.17	ENSRNOT00000058354	LOC500684 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC500684
chr1_-_80630038 Show fit	5.10	ENSRNOT00000025281	Tomm40 Links NCBI RGD Ensembl Show fit	translocase of outer mitochondrial membrane 40
chr3_-_160608308 Show fit	4.89	ENSRNOT00000047560	Wfdc15b Links NCBI RGD Ensembl Show fit	WAP four-disulfide core domain 15B
chr15_-_83442008 Show fit	4.84	ENSRNOT00000039400	Mzt1 Links NCBI RGD Ensembl Show fit	mitotic spindle organizing protein 1
chr6_+_135610743 Show fit	4.60	ENSRNOT00000010906	Traf3 Links NCBI RGD Ensembl Show fit	Tnf receptor-associated factor 3
chrX_+_71540895 Show fit	4.55	ENSRNOT00000004692 ENSRNOT00000082967	Ogt Links NCBI RGD Ensembl Show fit	O-linked N-acetylglucosamine (GlcNAc) transferase
chr3_-_125470413 Show fit	4.39	ENSRNOT00000028893	Trmt6 Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 6
chrX_+_156812064 Show fit	4.33	ENSRNOT00000077142	Hcfc1 Links NCBI RGD Ensembl Show fit	host cell factor C1
chrY_+_380382 Show fit	4.31	ENSRNOT00000092110	Rbmy1j Links NCBI RGD Ensembl Show fit	RNA binding motif protein, Y-linked, family 1, member J
chr8_-_123371257 Show fit	4.29	ENSRNOT00000017243	Stt3b Links NCBI RGD Ensembl Show fit	STT3B, catalytic subunit of the oligosaccharyltransferase complex
chr9_+_78862013 Show fit	4.25	ENSRNOT00000021105	Atic Links NCBI RGD Ensembl Show fit	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
chr3_-_113091770 Show fit	4.11	ENSRNOT00000068132	Lcmt2 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 2
chr5_-_62001196 Show fit	3.98	ENSRNOT00000012602	Trmo Links NCBI RGD Ensembl Show fit	tRNA methyltransferase O
chrX_+_157353730 Show fit	3.87	ENSRNOT00000080691	Haus7 Links NCBI RGD Ensembl Show fit	HAUS augmin-like complex, subunit 7
chr3_-_164964702 Show fit	3.84	ENSRNOT00000014595	Adnp Links NCBI RGD Ensembl Show fit	activity-dependent neuroprotector homeobox
chrX_-_155862363 Show fit	3.79	ENSRNOT00000089847	Dkc1 Links NCBI RGD Ensembl Show fit	dyskerin pseudouridine synthase 1
chr13_+_101698096 Show fit	3.75	ENSRNOT00000089309	Aida Links NCBI RGD Ensembl Show fit	axin interactor, dorsalization associated
chr10_+_4312863 Show fit	3.70	ENSRNOT00000091610	LOC100911685 Links NCBI RGD Ensembl Show fit	eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like
chr6_+_10912383 Show fit	3.39	ENSRNOT00000061747 ENSRNOT00000086247	Ttc7a Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 7A
chr10_+_4313100 Show fit	3.33	ENSRNOT00000074487	LOC100911685 Links NCBI RGD Ensembl Show fit	eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like
chr19_-_25261911 Show fit	3.27	ENSRNOT00000045180 ENSRNOT00000009806	Cc2d1a Links NCBI RGD Ensembl Show fit	coiled-coil and C2 domain containing 1A
chr1_+_203509731 Show fit	3.19	ENSRNOT00000028007	Hmx3 Links NCBI RGD Ensembl Show fit	H6 family homeobox 3
chr7_+_123308041 Show fit	3.04	ENSRNOT00000009428	Mei1 Links NCBI RGD Ensembl Show fit	meiotic double-stranded break formation protein 1
chr18_-_30775401 Show fit	2.93	ENSRNOT00000027128	Slc25a2 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 2
chr10_+_10530365 Show fit	2.93	ENSRNOT00000003843	Eef2kmt Links NCBI RGD Ensembl Show fit	eukaryotic elongation factor 2 lysine methyltransferase
chr4_-_85174931 Show fit	2.77	ENSRNOT00000014324 ENSRNOT00000088085	Nod1 Links NCBI RGD Ensembl Show fit	nucleotide-binding oligomerization domain containing 1
chr5_+_103024376 Show fit	2.75	ENSRNOT00000058536	AABR07049064.1 Links NCBI RGD Ensembl Show fit
chr1_+_278557792 Show fit	2.61	ENSRNOT00000023414	Atrnl1 Links NCBI RGD Ensembl Show fit	attractin like 1
chr17_-_30714410 Show fit	2.50	ENSRNOT00000022902 ENSRNOT00000081993	Prpf4b Links NCBI RGD Ensembl Show fit	pre-mRNA processing factor 4B
chr13_+_49933155 Show fit	2.48	ENSRNOT00000037039	Ppp1r15b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 15B
chr3_-_176431423 Show fit	2.28	ENSRNOT00000037271	Ythdf1 Links NCBI RGD Ensembl Show fit	YTH N(6)-methyladenosine RNA binding protein 1
chr10_+_4411766 Show fit	2.00	ENSRNOT00000003213	LOC100911685 Links NCBI RGD Ensembl Show fit	eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like
chr20_-_5037022 Show fit	1.95	ENSRNOT00000091022 ENSRNOT00000060762	Msh5 Links NCBI RGD Ensembl Show fit	mutS homolog 5
chr7_-_36499784 Show fit	1.92	ENSRNOT00000011948	AC124896.1 Links NCBI RGD Ensembl Show fit	suppressor of cytokine signaling 2
chr1_+_1771710 Show fit	1.55	ENSRNOT00000080138 ENSRNOT00000073528	Nup43 Links NCBI RGD Ensembl Show fit	nucleoporin 43
chr4_+_10631073 Show fit	1.39	ENSRNOT00000081939 ENSRNOT00000017907	Ptpn12 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 12
chrX_-_128268285 Show fit	1.38	ENSRNOT00000009755 ENSRNOT00000081880	Thoc2 Links NCBI RGD Ensembl Show fit	THO complex 2
chr10_+_59743544 Show fit	1.35	ENSRNOT00000093497 ENSRNOT00000056460	Tax1bp3 Links NCBI RGD Ensembl Show fit	Tax1 binding protein 3
chr7_+_13039781 Show fit	1.25	ENSRNOT00000067771 ENSRNOT00000090048	Mier2 Links NCBI RGD Ensembl Show fit	mesoderm induction early response 1, family member 2
chr14_+_4125380 Show fit	1.15	ENSRNOT00000002882	Zfp644 Links NCBI RGD Ensembl Show fit	zinc finger protein 644
chr2_+_128461224 Show fit	1.04	ENSRNOT00000018872	Jade1 Links NCBI RGD Ensembl Show fit	jade family PHD finger 1
chr7_-_123101851 Show fit	0.98	ENSRNOT00000090984 ENSRNOT00000005837	Phf5a Links NCBI RGD Ensembl Show fit	PHD finger protein 5A
chr7_-_11783849 Show fit	0.82	ENSRNOT00000026202	Sf3a2 Links NCBI RGD Ensembl Show fit	splicing factor 3a, subunit 2
chr10_+_75335146 Show fit	0.73	ENSRNOT00000073005	Srsf1 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 1
chr1_-_201110928 Show fit	0.69	ENSRNOT00000027721	Nsmce4a Links NCBI RGD Ensembl Show fit	NSE4 homolog A, SMC5-SMC6 complex component
chrX_+_54734385 Show fit	0.68	ENSRNOT00000005023	Nr0b1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 0, group B, member 1
chr10_-_108150511 Show fit	0.55	ENSRNOT00000073337	Cbx8 Links NCBI RGD Ensembl Show fit	chromobox 8
chr6_+_36941233 Show fit	0.51	ENSRNOT00000007073	Smc6 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 6
chr1_-_200163106 Show fit	0.12	ENSRNOT00000027644	Mcmbp Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex binding protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
72.2	505.6	GO:0006268	DNA unwinding involved in DNA replication(GO:0006268)
47.1	141.3	GO:0007056	spindle assembly involved in female meiosis(GO:0007056)
43.2	129.7	GO:0071163	DNA replication preinitiation complex assembly(GO:0071163)
42.5	170.0	GO:0006272	leading strand elongation(GO:0006272)
30.6	183.4	GO:0046125	pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
26.4	185.1	GO:0090166	Golgi disassembly(GO:0090166)
22.1	310.0	GO:0019985	translesion synthesis(GO:0019985)
21.2	106.0	GO:0071930	negative regulation of transcription involved in G1/S transition of mitotic cell cycle(GO:0071930)
19.5	19.5	GO:0046075	pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) dTTP metabolic process(GO:0046075)
19.2	173.0	GO:0033314	mitotic DNA replication checkpoint(GO:0033314)
18.8	56.4	GO:0035622	intrahepatic bile duct development(GO:0035622)
18.1	72.2	GO:0070495	regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495)
17.4	366.1	GO:0006270	DNA replication initiation(GO:0006270)
15.4	61.6	GO:0010424	DNA methylation on cytosine within a CG sequence(GO:0010424) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
14.8	236.5	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)
14.8	118.2	GO:1902969	mitotic DNA replication(GO:1902969)
13.3	80.0	GO:0014834	skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration(GO:0014834) response to trichostatin A(GO:0035983) cellular response to trichostatin A(GO:0035984)
10.5	31.4	GO:0060821	inactivation of X chromosome by DNA methylation(GO:0060821)
9.0	72.0	GO:0090267	positive regulation of spindle checkpoint(GO:0090232) positive regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090267)
8.8	97.1	GO:0031936	negative regulation of chromatin silencing(GO:0031936)
8.4	16.9	GO:0010216	maintenance of DNA methylation(GO:0010216)
7.9	31.8	GO:0034421	post-translational protein acetylation(GO:0034421)
7.4	96.4	GO:0048304	positive regulation of isotype switching to IgG isotypes(GO:0048304)
7.3	36.6	GO:0014043	negative regulation of neuron maturation(GO:0014043)
6.9	116.8	GO:0002227	innate immune response in mucosa(GO:0002227)
6.7	60.6	GO:0044789	modulation by host of viral release from host cell(GO:0044789) positive regulation by host of viral release from host cell(GO:0044791)
6.5	508.4	GO:0006342	chromatin silencing(GO:0006342)
5.7	22.9	GO:0043570	maintenance of DNA repeat elements(GO:0043570)
5.5	43.6	GO:0098532	histone H3-K27 trimethylation(GO:0098532)
5.1	81.3	GO:0001833	inner cell mass cell proliferation(GO:0001833)
4.4	22.1	GO:0006177	GMP biosynthetic process(GO:0006177)
4.0	23.7	GO:0034773	histone H4-K20 trimethylation(GO:0034773)
3.9	43.2	GO:0085020	protein K6-linked ubiquitination(GO:0085020)
3.7	335.6	GO:0006334	nucleosome assembly(GO:0006334)
3.4	17.2	GO:0036337	Fas signaling pathway(GO:0036337)
3.1	9.2	GO:1904694	negative regulation of vascular smooth muscle contraction(GO:1904694)
2.7	62.9	GO:0060236	regulation of mitotic spindle organization(GO:0060236)
2.7	8.2	GO:1990166	protein localization to site of double-strand break(GO:1990166)
2.5	7.4	GO:2001205	negative regulation of osteoclast development(GO:2001205)
2.4	9.7	GO:0019042	viral latency(GO:0019042) release from viral latency(GO:0019046)
2.4	51.8	GO:0000301	retrograde transport, vesicle recycling within Golgi(GO:0000301)
2.3	14.0	GO:0071386	cellular response to corticosterone stimulus(GO:0071386)
2.3	23.1	GO:0090073	positive regulation of protein homodimerization activity(GO:0090073)
2.3	9.1	GO:0055005	ventricular cardiac myofibril assembly(GO:0055005)
2.3	9.0	GO:0002184	cytoplasmic translational termination(GO:0002184)
2.2	15.3	GO:1901838	positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter(GO:1901838)
2.2	8.7	GO:0010825	positive regulation of centrosome duplication(GO:0010825)
2.1	14.9	GO:2001032	regulation of double-strand break repair via nonhomologous end joining(GO:2001032)
2.0	16.2	GO:0023035	CD40 signaling pathway(GO:0023035)
2.0	10.0	GO:2000325	regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000325) positive regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000327)
1.9	9.7	GO:0060903	positive regulation of meiosis I(GO:0060903)
1.9	5.8	GO:0071461	cellular response to redox state(GO:0071461)
1.8	25.5	GO:0043968	histone H2A acetylation(GO:0043968)
1.6	4.8	GO:0033566	gamma-tubulin complex localization(GO:0033566)
1.5	10.6	GO:1990822	arginine transmembrane transport(GO:1903826) basic amino acid transmembrane transport(GO:1990822)
1.3	14.7	GO:1904816	positive regulation of protein localization to chromosome, telomeric region(GO:1904816)
1.3	21.2	GO:2000001	regulation of DNA damage checkpoint(GO:2000001)
1.3	10.5	GO:2001269	positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway(GO:2001269)
1.3	25.0	GO:0006298	mismatch repair(GO:0006298)
1.3	43.7	GO:0000387	spliceosomal snRNP assembly(GO:0000387)
1.3	37.0	GO:0007099	centriole replication(GO:0007099)
1.3	11.5	GO:0000722	telomere maintenance via recombination(GO:0000722)
1.2	27.5	GO:0035855	megakaryocyte development(GO:0035855)
1.1	4.6	GO:0090526	regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526)
1.0	9.4	GO:0035879	plasma membrane lactate transport(GO:0035879)
1.0	2.9	GO:1903352	L-ornithine transmembrane transport(GO:1903352)
0.9	18.4	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.9	6.2	GO:0043353	enucleate erythrocyte differentiation(GO:0043353)
0.8	5.8	GO:0035610	protein side chain deglutamylation(GO:0035610)
0.7	15.0	GO:0031297	replication fork processing(GO:0031297)
0.7	6.4	GO:0006301	postreplication repair(GO:0006301)
0.7	4.3	GO:0006189	'de novo' IMP biosynthetic process(GO:0006189)
0.7	25.9	GO:0006284	base-excision repair(GO:0006284)
0.6	4.3	GO:0043686	co-translational protein modification(GO:0043686)
0.6	31.0	GO:0032781	positive regulation of ATPase activity(GO:0032781)
0.5	3.8	GO:0010835	regulation of protein ADP-ribosylation(GO:0010835)
0.5	38.6	GO:0071549	cellular response to dexamethasone stimulus(GO:0071549)
0.5	4.6	GO:0008063	Toll signaling pathway(GO:0008063)
0.5	44.5	GO:0001541	ovarian follicle development(GO:0001541)
0.5	12.7	GO:0030488	tRNA methylation(GO:0030488)
0.5	56.1	GO:0007051	spindle organization(GO:0007051)
0.5	2.8	GO:1904415	regulation of xenophagy(GO:1904415) positive regulation of xenophagy(GO:1904417)
0.4	3.7	GO:0043496	regulation of protein homodimerization activity(GO:0043496)
0.4	45.1	GO:0051092	positive regulation of NF-kappaB transcription factor activity(GO:0051092)
0.4	2.5	GO:1903912	negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation(GO:1903912)
0.4	91.5	GO:0007018	microtubule-based movement(GO:0007018)
0.3	7.4	GO:0061157	mRNA destabilization(GO:0061157)
0.3	7.2	GO:0033197	response to vitamin E(GO:0033197)
0.3	25.1	GO:0010923	negative regulation of phosphatase activity(GO:0010923)
0.3	13.2	GO:0046854	phosphatidylinositol phosphorylation(GO:0046854)
0.3	1.4	GO:0010793	regulation of mRNA export from nucleus(GO:0010793)
0.3	3.0	GO:0090220	meiotic telomere clustering(GO:0045141) chromosome localization to nuclear envelope involved in homologous chromosome segregation(GO:0090220)
0.3	7.7	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.3	17.7	GO:0000724	double-strand break repair via homologous recombination(GO:0000724)
0.2	9.1	GO:0030199	collagen fibril organization(GO:0030199)
0.2	12.3	GO:0034644	cellular response to UV(GO:0034644)
0.2	2.3	GO:0045948	positive regulation of translational initiation(GO:0045948)
0.2	7.1	GO:0007212	dopamine receptor signaling pathway(GO:0007212)
0.1	6.7	GO:0002181	cytoplasmic translation(GO:0002181)
0.1	2.9	GO:0018023	peptidyl-lysine trimethylation(GO:0018023)
0.1	1.0	GO:0043983	histone H4-K12 acetylation(GO:0043983)
0.1	29.7	GO:0030336	negative regulation of cell migration(GO:0030336)
0.1	3.2	GO:0060135	maternal process involved in female pregnancy(GO:0060135)
0.1	1.4	GO:2000009	negative regulation of protein localization to cell surface(GO:2000009)
0.1	0.7	GO:0000395	mRNA 5'-splice site recognition(GO:0000395)
0.1	5.9	GO:0042990	regulation of transcription factor import into nucleus(GO:0042990)
0.1	3.4	GO:0006879	cellular iron ion homeostasis(GO:0006879)
0.1	3.6	GO:0043966	histone H3 acetylation(GO:0043966)
0.1	11.2	GO:0001890	placenta development(GO:0001890)
0.1	3.8	GO:0051028	mRNA transport(GO:0051028)
0.0	0.7	GO:0033144	negative regulation of intracellular steroid hormone receptor signaling pathway(GO:0033144)
0.0	3.3	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043123)
0.0	1.4	GO:0042058	regulation of epidermal growth factor receptor signaling pathway(GO:0042058)
0.0	0.6	GO:0016574	histone ubiquitination(GO:0016574)
0.0	0.7	GO:2001022	positive regulation of response to DNA damage stimulus(GO:2001022)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
70.1	771.3	GO:0042555	MCM complex(GO:0042555)
61.7	185.1	GO:0097125	cyclin B1-CDK1 complex(GO:0097125)
59.1	236.5	GO:0005971	ribonucleoside-diphosphate reductase complex(GO:0005971)
45.2	225.8	GO:0008622	epsilon DNA polymerase complex(GO:0008622)
39.4	118.2	GO:0000811	GINS complex(GO:0000811)
34.6	103.8	GO:0070557	PCNA-p21 complex(GO:0070557)
20.1	100.6	GO:0031465	Cul4B-RING E3 ubiquitin ligase complex(GO:0031465)
17.7	106.0	GO:0035189	Rb-E2F complex(GO:0035189)
15.4	122.9	GO:0001740	Barr body(GO:0001740)
11.7	1068.1	GO:0000786	nucleosome(GO:0000786)
10.8	43.2	GO:0031436	BRCA1-BARD1 complex(GO:0031436)
10.2	81.3	GO:0000796	condensin complex(GO:0000796)
9.5	28.6	GO:0032301	MutSalpha complex(GO:0032301)
8.7	60.6	GO:0034991	nuclear meiotic cohesin complex(GO:0034991)
7.9	102.2	GO:0000800	lateral element(GO:0000800)
7.7	38.6	GO:0035985	senescence-associated heterochromatin focus(GO:0035985)
7.4	37.0	GO:0098536	deuterosome(GO:0098536)
7.3	43.7	GO:0034715	pICln-Sm protein complex(GO:0034715)
6.9	27.4	GO:0032777	Piccolo NuA4 histone acetyltransferase complex(GO:0032777)
5.6	44.5	GO:0031298	replication fork protection complex(GO:0031298)
5.4	92.1	GO:0035098	ESC/E(Z) complex(GO:0035098)
5.3	21.2	GO:0032299	ribonuclease H2 complex(GO:0032299)
4.8	19.2	GO:0033553	rDNA heterochromatin(GO:0033553)
4.6	36.5	GO:0005658	alpha DNA polymerase:primase complex(GO:0005658)
3.7	18.7	GO:0035061	interchromatin granule(GO:0035061)
3.5	31.8	GO:0031390	Ctf18 RFC-like complex(GO:0031390)
3.1	43.5	GO:0072687	meiotic spindle(GO:0072687)
3.1	49.5	GO:0043240	Fanconi anaemia nuclear complex(GO:0043240)
3.1	37.1	GO:0001673	male germ cell nucleus(GO:0001673)
3.1	15.3	GO:0001651	dense fibrillar component(GO:0001651)
2.6	36.1	GO:0016580	Sin3 complex(GO:0016580)
2.5	61.6	GO:0005721	pericentric heterochromatin(GO:0005721)
2.3	9.0	GO:0018444	translation release factor complex(GO:0018444)
2.1	142.6	GO:0005871	kinesin complex(GO:0005871)
1.8	18.4	GO:0097550	transcriptional preinitiation complex(GO:0097550)
1.6	4.8	GO:0008275	gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) gamma-tubulin small complex(GO:0008275)
1.5	4.4	GO:0031515	tRNA (m1A) methyltransferase complex(GO:0031515)
1.5	14.6	GO:0070652	HAUS complex(GO:0070652)
1.3	10.5	GO:0070776	H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)
0.8	9.6	GO:0005662	DNA replication factor A complex(GO:0005662)
0.8	3.8	GO:0090661	box H/ACA telomerase RNP complex(GO:0090661)
0.7	35.7	GO:0030173	integral component of Golgi membrane(GO:0030173)
0.7	7.4	GO:0001527	microfibril(GO:0001527) fibril(GO:0043205)
0.6	160.2	GO:0005819	spindle(GO:0005819)
0.6	5.1	GO:0005742	mitochondrial outer membrane translocase complex(GO:0005742)
0.5	68.0	GO:0005874	microtubule(GO:0005874)
0.5	2.4	GO:0030015	CCR4-NOT core complex(GO:0030015)
0.5	11.2	GO:0090544	BAF-type complex(GO:0090544)
0.4	4.6	GO:0035631	CD40 receptor complex(GO:0035631)
0.4	6.8	GO:0071011	precatalytic spliceosome(GO:0071011)
0.3	24.5	GO:0017053	transcriptional repressor complex(GO:0017053)
0.3	4.3	GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671)
0.3	4.3	GO:0008250	oligosaccharyltransferase complex(GO:0008250)
0.2	4.8	GO:0019013	viral nucleocapsid(GO:0019013)
0.2	5.7	GO:0032839	dendrite cytoplasm(GO:0032839)
0.2	2.5	GO:0000164	protein phosphatase type 1 complex(GO:0000164)
0.2	0.7	GO:0030915	Smc5-Smc6 complex(GO:0030915)
0.2	7.7	GO:0019005	SCF ubiquitin ligase complex(GO:0019005)
0.2	1.6	GO:0031080	nuclear pore outer ring(GO:0031080)
0.1	4.6	GO:0042588	zymogen granule(GO:0042588)
0.1	12.1	GO:0016605	PML body(GO:0016605)
0.1	5.8	GO:0001772	immunological synapse(GO:0001772)
0.1	1.4	GO:0000445	THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445)
0.1	44.5	GO:0043235	receptor complex(GO:0043235)
0.1	51.7	GO:0005813	centrosome(GO:0005813)
0.1	10.7	GO:0022625	cytosolic large ribosomal subunit(GO:0022625)
0.1	7.2	GO:0022627	cytosolic small ribosomal subunit(GO:0022627)
0.1	234.5	GO:0005654	nucleoplasm(GO:0005654)
0.1	1.9	GO:0000795	synaptonemal complex(GO:0000795)
0.1	14.9	GO:0043292	contractile fiber(GO:0043292)
0.1	5.6	GO:0000790	nuclear chromatin(GO:0000790)
0.1	5.9	GO:0005795	Golgi stack(GO:0005795)
0.1	4.6	GO:0001650	fibrillar center(GO:0001650)
0.0	1.4	GO:0002102	podosome(GO:0002102)
0.0	16.5	GO:0005730	nucleolus(GO:0005730)
0.0	45.7	GO:0005634	nucleus(GO:0005634)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
45.8	183.4	GO:0001884	pyrimidine nucleoside binding(GO:0001884) deoxynucleoside kinase activity(GO:0019136)
39.4	236.5	GO:0061731	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
34.6	103.8	GO:0030337	DNA polymerase processivity factor activity(GO:0030337)
27.2	135.9	GO:0010997	anaphase-promoting complex binding(GO:0010997)
26.7	133.5	GO:0008310	single-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008310)
22.8	318.6	GO:0003688	DNA replication origin binding(GO:0003688)
17.0	102.2	GO:0000150	recombinase activity(GO:0000150)
12.4	582.5	GO:0003678	DNA helicase activity(GO:0003678)
12.3	61.6	GO:0003886	DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
10.9	185.1	GO:0008353	RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
10.3	20.6	GO:0032564	dATP binding(GO:0032564)
10.3	72.0	GO:0008821	crossover junction endodeoxyribonuclease activity(GO:0008821)
8.0	80.0	GO:0070878	primary miRNA binding(GO:0070878)
7.6	22.9	GO:0032142	single guanine insertion binding(GO:0032142)
7.0	56.0	GO:0019103	pyrimidine nucleotide binding(GO:0019103)
7.0	27.9	GO:0000405	bubble DNA binding(GO:0000405)
6.4	38.6	GO:1990226	histone methyltransferase binding(GO:1990226)
6.1	18.4	GO:0000991	transcription factor activity, core RNA polymerase II binding(GO:0000991)
4.9	24.3	GO:0036033	mediator complex binding(GO:0036033)
4.2	21.2	GO:0004523	RNA-DNA hybrid ribonuclease activity(GO:0004523)
3.9	101.1	GO:0003887	DNA-directed DNA polymerase activity(GO:0003887)
3.8	15.3	GO:0042134	rRNA primary transcript binding(GO:0042134)
3.6	14.4	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity(GO:0016428)
3.5	31.8	GO:0043142	single-stranded DNA-dependent ATPase activity(GO:0043142)
2.9	26.5	GO:1990446	U1 snRNP binding(GO:1990446)
2.6	13.2	GO:0004430	1-phosphatidylinositol 4-kinase activity(GO:0004430)
2.6	91.5	GO:0031492	nucleosomal DNA binding(GO:0031492)
2.3	122.8	GO:0003684	damaged DNA binding(GO:0003684)
2.3	81.3	GO:0043425	bHLH transcription factor binding(GO:0043425)
2.1	17.2	GO:0032184	SUMO polymer binding(GO:0032184)
2.1	19.2	GO:0046974	histone methyltransferase activity (H3-K9 specific)(GO:0046974)
2.0	42.3	GO:0031996	thioesterase binding(GO:0031996)
1.9	5.7	GO:0031208	POZ domain binding(GO:0031208)
1.9	123.8	GO:0070491	repressing transcription factor binding(GO:0070491)
1.6	142.6	GO:0003777	microtubule motor activity(GO:0003777)
1.6	56.4	GO:0051059	NF-kappaB binding(GO:0051059)
1.5	4.6	GO:0097363	protein O-GlcNAc transferase activity(GO:0097363)
1.5	36.6	GO:0001102	RNA polymerase II activating transcription factor binding(GO:0001102)
1.4	878.5	GO:0046982	protein heterodimerization activity(GO:0046982)
1.4	51.1	GO:0001205	transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205)
1.3	10.6	GO:0015181	arginine transmembrane transporter activity(GO:0015181)
1.3	31.5	GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding(GO:0000980)
1.2	9.4	GO:0015129	lactate transmembrane transporter activity(GO:0015129)
1.0	4.0	GO:0016426	tRNA (adenine) methyltransferase activity(GO:0016426)
1.0	152.3	GO:0042393	histone binding(GO:0042393)
0.8	108.4	GO:0001047	core promoter binding(GO:0001047)
0.8	9.0	GO:0008079	translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079)
0.6	4.3	GO:0019238	cyclohydrolase activity(GO:0019238)
0.6	2.9	GO:0000064	L-ornithine transmembrane transporter activity(GO:0000064)
0.6	5.1	GO:0015266	protein channel activity(GO:0015266)
0.5	3.8	GO:0034061	DNA polymerase activity(GO:0034061)
0.5	31.0	GO:0031072	heat shock protein binding(GO:0031072)
0.5	16.9	GO:0031490	chromatin DNA binding(GO:0031490)
0.5	10.9	GO:0048027	mRNA 5'-UTR binding(GO:0048027)
0.4	5.2	GO:0031491	nucleosome binding(GO:0031491)
0.4	2.8	GO:0050700	CARD domain binding(GO:0050700)
0.4	2.3	GO:1990247	N6-methyladenosine-containing RNA binding(GO:1990247)
0.4	16.2	GO:0031593	polyubiquitin binding(GO:0031593)
0.3	4.3	GO:0004579	oligosaccharyl transferase activity(GO:0004576) dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
0.2	19.8	GO:0051087	chaperone binding(GO:0051087)
0.2	1.9	GO:0030983	mismatched DNA binding(GO:0030983)
0.2	5.8	GO:0004181	metallocarboxypeptidase activity(GO:0004181)
0.2	13.1	GO:0004715	non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.2	0.7	GO:0044547	DNA topoisomerase binding(GO:0044547)
0.2	22.1	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616)
0.2	0.7	GO:0050682	AF-2 domain binding(GO:0050682)
0.1	27.1	GO:0016874	ligase activity(GO:0016874)
0.1	2.1	GO:0005092	GDP-dissociation inhibitor activity(GO:0005092)
0.1	7.4	GO:0003730	mRNA 3'-UTR binding(GO:0003730)
0.1	2.5	GO:0097472	cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472)
0.1	67.2	GO:0019901	protein kinase binding(GO:0019901)
0.1	10.4	GO:0001078	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.1	7.4	GO:0005201	extracellular matrix structural constituent(GO:0005201)
0.1	49.7	GO:0004842	ubiquitin-protein transferase activity(GO:0004842)
0.1	7.4	GO:0004386	helicase activity(GO:0004386)
0.1	9.1	GO:0004222	metalloendopeptidase activity(GO:0004222)
0.1	10.5	GO:0003713	transcription coactivator activity(GO:0003713)
0.1	3.8	GO:0005507	copper ion binding(GO:0005507)
0.1	63.9	GO:0005524	ATP binding(GO:0005524)
0.1	2.9	GO:0016279	lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279)
0.1	4.1	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0	4.9	GO:0004867	serine-type endopeptidase inhibitor activity(GO:0004867)
0.0	2.5	GO:0019888	protein phosphatase regulator activity(GO:0019888)
0.0	1.4	GO:0008013	beta-catenin binding(GO:0008013)
0.0	5.4	GO:0001077	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001077)
0.0	5.9	GO:0004252	serine-type endopeptidase activity(GO:0004252)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
23.6	236.2	SA G2 AND M PHASES	Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
10.9	511.6	PID ATR PATHWAY	ATR signaling pathway
7.6	106.0	SA REG CASCADE OF CYCLIN EXPR	Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
7.5	195.9	PID BARD1 PATHWAY	BARD1 signaling events
6.1	405.6	PID E2F PATHWAY	E2F transcription factor network
5.0	104.1	PID FANCONI PATHWAY	Fanconi anemia pathway
4.2	184.8	PID PLK1 PATHWAY	PLK1 signaling events
2.9	34.8	PID P38 GAMMA DELTA PATHWAY	Signaling mediated by p38-gamma and p38-delta
1.4	118.4	PID MYC ACTIV PATHWAY	Validated targets of C-MYC transcriptional activation
1.4	61.6	PID RB 1PATHWAY	Regulation of retinoblastoma protein
1.3	24.3	PID ATM PATHWAY	ATM pathway
1.2	98.2	PID CMYB PATHWAY	C-MYB transcription factor network
1.2	17.2	SA PROGRAMMED CELL DEATH	Programmed cell death, or apoptosis, eliminates damaged or unneeded cells.
1.0	56.4	PID NOTCH PATHWAY	Notch signaling pathway
0.7	14.0	PID HDAC CLASSIII PATHWAY	Signaling events mediated by HDAC Class III
0.5	19.6	SIG CD40PATHWAYMAP	Genes related to CD40 signaling
0.5	23.1	PID TAP63 PATHWAY	Validated transcriptional targets of TAp63 isoforms
0.4	7.4	PID INTEGRIN5 PATHWAY	Beta5 beta6 beta7 and beta8 integrin cell surface interactions
0.3	16.2	PID ANGIOPOIETIN RECEPTOR PATHWAY	Angiopoietin receptor Tie2-mediated signaling
0.3	9.1	PID P38 ALPHA BETA DOWNSTREAM PATHWAY	Signaling mediated by p38-alpha and p38-beta
0.2	10.0	PID TELOMERASE PATHWAY	Regulation of Telomerase
0.2	5.8	PID THROMBIN PAR1 PATHWAY	PAR1-mediated thrombin signaling events
0.1	7.7	WNT SIGNALING	Genes related to Wnt-mediated signal transduction
0.0	0.7	PID ERB GENOMIC PATHWAY	Validated nuclear estrogen receptor beta network
0.0	9.1	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
80.0	880.2	REACTOME UNWINDING OF DNA	Genes involved in Unwinding of DNA
37.0	813.0	REACTOME G1 S SPECIFIC TRANSCRIPTION	Genes involved in G1/S-Specific Transcription
23.3	605.3	REACTOME RNA POL I PROMOTER OPENING	Genes involved in RNA Polymerase I Promoter Opening
16.1	257.7	REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER	Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER
11.5	183.4	REACTOME PURINE SALVAGE	Genes involved in Purine salvage
8.2	106.1	REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX	Genes involved in Association of licensing factors with the pre-replicative complex
6.3	56.4	REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR	Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor
5.7	102.2	REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS	Genes involved in Homologous recombination repair of replication-independent double-strand breaks
4.6	142.6	REACTOME KINESINS	Genes involved in Kinesins
4.3	38.7	REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX	Genes involved in Activation of the pre-replicative complex
4.1	49.7	REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION	Genes involved in Cyclin A/B1 associated events during G2/M transition
2.9	31.6	REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION	Genes involved in Apoptosis induced DNA fragmentation
2.6	49.5	REACTOME FANCONI ANEMIA PATHWAY	Genes involved in Fanconi Anemia pathway
2.4	103.5	REACTOME MRNA SPLICING MINOR PATHWAY	Genes involved in mRNA Splicing - Minor Pathway
2.2	26.4	REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS	Genes involved in Purine ribonucleoside monophosphate biosynthesis
1.9	51.8	REACTOME SIGNALING BY FGFR1 FUSION MUTANTS	Genes involved in Signaling by FGFR1 fusion mutants
1.7	31.4	REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES	Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
1.6	38.6	REACTOME RNA POL I TRANSCRIPTION	Genes involved in RNA Polymerase I Transcription
0.9	13.2	REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE	Genes involved in Synthesis of PIPs at the early endosome membrane
0.7	114.5	REACTOME SIGNALING BY RHO GTPASES	Genes involved in Signaling by Rho GTPases
0.7	9.4	REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS	Genes involved in Bile salt and organic anion SLC transporters
0.6	14.0	REACTOME SIGNALING BY NODAL	Genes involved in Signaling by NODAL
0.5	3.8	REACTOME EXTENSION OF TELOMERES	Genes involved in Extension of Telomeres
0.4	4.6	REACTOME ACTIVATION OF IRF3 IRF7 MEDIATED BY TBK1 IKK EPSILON	Genes involved in Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon
0.4	19.0	REACTOME IL1 SIGNALING	Genes involved in Interleukin-1 signaling
0.4	5.9	REACTOME ACTIVATION OF CHAPERONES BY ATF6 ALPHA	Genes involved in Activation of Chaperones by ATF6-alpha
0.4	9.1	REACTOME ERK MAPK TARGETS	Genes involved in ERK/MAPK targets
0.3	10.6	REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE	Genes involved in Amino acid transport across the plasma membrane
0.2	9.1	REACTOME COLLAGEN FORMATION	Genes involved in Collagen formation
0.1	7.2	REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX	Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.1	9.2	REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION	Genes involved in Factors involved in megakaryocyte development and platelet production
0.1	1.9	REACTOME MEIOTIC RECOMBINATION	Genes involved in Meiotic Recombination
0.1	7.4	REACTOME INTEGRIN CELL SURFACE INTERACTIONS	Genes involved in Integrin cell surface interactions
0.1	2.9	REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS	Genes involved in Association of TriC/CCT with target proteins during biosynthesis
0.1	6.7	REACTOME MRNA SPLICING	Genes involved in mRNA Splicing
0.1	1.6	REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus