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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G63090
Z-value: 1.49
Transcription factors associated with AT5G63090
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G63090
|
AT5G63090 | Lateral organ boundaries (LOB) domain family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LOB | arTal_v1_Chr5_-_25310973_25311019 | -0.25 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 9.69 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 9.11 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 8.32 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 7.22 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 7.19 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 7.10 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 6.37 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_-_4008018_4008018 Show fit | 6.15 |
AT3G12610.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 5.98 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 5.95 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G63090
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 14.4 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 11.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 9.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 9.6 | GO:0016485 | protein processing(GO:0016485) |
| 0.2 | 9.2 | GO:0042335 | cuticle development(GO:0042335) |
| 1.5 | 9.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.1 | 7.7 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 7.3 | GO:0006412 | translation(GO:0006412) |
| 1.7 | 7.0 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.2 | 7.0 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 25.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 22.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 16.9 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 13.4 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 11.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 9.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 8.3 | GO:0099503 | secretory vesicle(GO:0099503) |
| 1.2 | 8.1 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
| 0.1 | 7.6 | GO:0005874 | microtubule(GO:0005874) |
| 0.0 | 7.4 | GO:0009570 | chloroplast stroma(GO:0009570) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 14.4 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.2 | 12.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 10.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 10.4 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 10.0 | GO:0005524 | ATP binding(GO:0005524) |
| 0.4 | 9.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 8.7 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.3 | 8.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 7.6 | GO:0004180 | carboxypeptidase activity(GO:0004180) |
| 0.4 | 7.1 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 1.5 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
| 0.1 | 1.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 8.1 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.7 | 2.0 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.3 | 0.9 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.1 | 0.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |