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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G63090

Z-value: 1.49

Transcription factors associated with AT5G63090

Gene Symbol Gene ID Gene Info
AT5G63090 Lateral organ boundaries (LOB) domain family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
LOBarTal_v1_Chr5_-_25310973_25311019-0.252.0e-01Click!

Activity profile of AT5G63090 motif

Sorted Z-values of AT5G63090 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_18098633 9.69 AT4G38770.1
proline-rich protein 4
Chr2_+_14524607 9.11 AT2G34430.1
light-harvesting chlorophyll-protein complex II subunit B1
Chr1_+_3157501 8.32 AT1G09750.1
Eukaryotic aspartyl protease family protein
Chr4_-_7493080 7.22 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr2_+_9844134 7.19 AT2G23130.1
AT2G23130.2
arabinogalactan protein 17
Chr2_-_18744322 7.10 AT2G45470.1
FASCICLIN-like arabinogalactan protein 8
Chr3_-_3357754 6.37 AT3G10720.2
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_4008018 6.15 AT3G12610.1
Leucine-rich repeat (LRR) family protein
Chr5_-_6976036 5.98 AT5G20630.1
germin 3
Chr5_-_22560461 5.95 AT5G55730.2
AT5G55730.1
FASCICLIN-like arabinogalactan 1
Chr3_+_23345754 5.44 AT3G63200.1
PATATIN-like protein 9
Chr3_-_3356811 5.37 AT3G10720.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_6409655 5.28 AT1G18620.3
AT1G18620.1
AT1G18620.4
LONGIFOLIA protein
Chr3_-_4744263 5.17 AT3G14240.1
Subtilase family protein
Chr2_-_15483706 4.94 AT2G36885.2
AT2G36885.1
translation initiation factor
Chr2_-_15789605 4.92 AT2G37640.2
Barwin-like endoglucanases superfamily protein
Chr2_-_15790139 4.85 AT2G37640.1
Barwin-like endoglucanases superfamily protein
Chr5_-_25373904 4.75 AT5G63310.1
nucleoside diphosphate kinase 2
Chr1_-_464981 4.75 AT1G02335.1
germin-like protein subfamily 2 member 2 precursor
Chr3_+_18262290 4.67 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
IQ-domain 21
Chr3_-_15617149 4.61 AT3G43720.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_6410947 4.60 AT1G18620.5
LONGIFOLIA protein
Chr3_-_15617309 4.56 AT3G43720.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_898480 4.53 AT1G03600.1
photosystem II family protein
Chr1_+_6410033 4.50 AT1G18620.2
LONGIFOLIA protein
Chr1_+_25574381 4.35 AT1G68238.1
transmembrane protein
Chr2_-_7496292 4.34 AT2G17230.1
EXORDIUM like 5
Chr3_-_373805 4.27 AT3G02110.1
serine carboxypeptidase-like 25
Chr5_-_671687 4.27 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr3_-_8902835 4.26 AT3G24480.1
Leucine-rich repeat (LRR) family protein
Chr5_+_2680401 4.26 AT5G08330.1
TCP family transcription factor
Chr1_+_27452748 4.25 AT1G72970.1
AT1G72970.2
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr3_+_6180621 4.24 AT3G18050.1
GPI-anchored protein
Chr5_+_5078200 4.24 AT5G15600.1
AT5G15600.2
SPIRAL1-like4
Chr4_-_7353117 4.20 AT4G12420.1
AT4G12420.2
Cupredoxin superfamily protein
Chr3_+_5314817 4.16 AT3G15680.1
AT3G15680.2
Ran BP2/NZF zinc finger-like superfamily protein
Chr1_+_2249133 4.11 AT1G07320.2
AT1G07320.3
AT1G07320.4
ribosomal protein L4
Chr4_-_17181261 4.07 AT4G36360.2
beta-galactosidase 3
Chr4_-_17181466 4.04 AT4G36360.1
beta-galactosidase 3
Chr3_-_5252697 3.97 AT3G15520.1
AT3G15520.2
AT3G15520.3
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_2248967 3.94 AT1G07320.1
ribosomal protein L4
Chr1_-_28603932 3.90 AT1G76240.1
DUF241 domain protein (DUF241)
Chr3_-_2130451 3.89 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
Chr3_-_21949796 3.83 AT3G59400.1
protein GENOMES UNCOUPLED 4
Chr5_-_5310951 3.76 AT5G16250.1
transmembrane protein
Chr4_+_9803624 3.73 AT4G17600.1
Chlorophyll A-B binding family protein
Chr4_-_7591259 3.71 AT4G12980.1
Auxin-responsive family protein
Chr5_+_6387341 3.67 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
Heavy metal transport/detoxification superfamily protein
Chr2_+_1033598 3.67 AT2G03410.1
Mo25 family protein
Chr2_+_15445294 3.57 AT2G36830.1
gamma tonoplast intrinsic protein
Chr1_-_4365414 3.56 AT1G12800.1
Nucleic acid-binding, OB-fold-like protein
Chr4_-_14872267 3.53 AT4G30410.1
AT4G30410.2
sequence-specific DNA binding transcription factor
Chr5_-_20940895 3.51 AT5G51550.1
EXORDIUM like 3
Chr3_-_1855063 3.44 AT3G06130.2
AT3G06130.1
Heavy metal transport/detoxification superfamily protein
Chr3_-_9723904 3.41 AT3G26520.1
tonoplast intrinsic protein 2
Chr5_+_16151772 3.40 AT5G40380.3
AT5G40380.2
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr1_-_19978048 3.34 AT1G53520.1
Chalcone-flavanone isomerase family protein
Chr3_-_20257916 3.32 AT3G54720.1
Peptidase M28 family protein
Chr1_-_6278150 3.31 AT1G18250.2
AT1G18250.1
Pathogenesis-related thaumatin superfamily protein
Chr2_+_15934244 3.30 AT2G38080.1
Laccase/Diphenol oxidase family protein
Chr5_-_3709403 3.27 AT5G11550.1
ARM repeat superfamily protein
Chr3_-_22256177 3.26 AT3G60220.1
TOXICOS EN LEVADURA 4
Chr1_+_18351324 3.24 AT1G49580.1
Calcium-dependent protein kinase (CDPK) family protein
Chr3_+_19417372 3.22 AT3G52370.2
AT3G52370.1
FASCICLIN-like arabinogalactan protein 15 precursor
Chr5_-_24326827 3.21 AT5G60490.1
FASCICLIN-like arabinogalactan-protein 12
Chr1_+_568558 3.19 AT1G02650.2
AT1G02650.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_7768040 3.19 AT2G17880.1
Chaperone DnaJ-domain superfamily protein
Chr2_+_7209108 3.17 AT2G16630.1
Pollen Ole e 1 allergen and extensin family protein
Chr3_-_9255083 3.14 AT3G25500.1
formin homology 1
Chr4_+_14192569 3.11 AT4G28720.1
Flavin-binding monooxygenase family protein
Chr4_-_17979740 3.06 AT4G38400.1
AT4G38401.1
expansin-like A2
hypothetical protein
Chr3_-_5252506 3.06 AT3G15520.4
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_+_10231218 3.03 AT4G18570.2
AT4G18570.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_9458176 3.01 AT1G27210.1
ARM repeat superfamily protein
Chr3_+_18514266 3.00 AT3G49940.1
LOB domain-containing protein 38
Chr4_+_10949573 2.96 AT4G20270.1
Leucine-rich receptor-like protein kinase family protein
Chr3_+_20984635 2.96 AT3G56650.1
thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Chr3_-_2407634 2.96 AT3G07540.1
Actin-binding FH2 (formin homology 2) family protein
Chr5_-_26845294 2.94 AT5G67280.1
receptor-like kinase
Chr4_+_7758275 2.90 AT4G13340.1
Leucine-rich repeat (LRR) family protein
Chr5_+_26572265 2.90 AT5G66580.1
hypothetical protein
Chr5_+_16151522 2.90 AT5G40380.1
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr1_-_4217412 2.90 AT1G12380.1
hypothetical protein
Chr1_-_1349478 2.89 AT1G04800.1
glycine-rich protein
Chr2_-_10063863 2.89 AT2G23670.1
homolog of Synechocystis YCF37
Chr5_+_25016860 2.87 AT5G62280.1
DUF1442 family protein (DUF1442)
Chr4_-_1230164 2.86 AT4G02770.1
photosystem I subunit D-1
Chr1_-_3272110 2.78 AT1G10020.1
formin-like protein (DUF1005)
Chr3_+_21680027 2.77 AT3G58620.1
AT3G58620.2
tetratricopetide-repeat thioredoxin-like 4
Chr2_+_16869189 2.75 AT2G40400.1
AT2G40400.2
AT2G40400.3
DUF399 family protein, putative (DUF399 and DUF3411)
Chr5_+_25191860 2.73 AT5G62720.2
Integral membrane HPP family protein
Chr2_-_14629183 2.72 AT2G34680.2
AT2G34680.1
Outer arm dynein light chain 1 protein
Chr1_+_116784 2.71 AT1G01300.1
Eukaryotic aspartyl protease family protein
Chr5_+_25191402 2.70 AT5G62720.1
Integral membrane HPP family protein
Chr5_+_6387735 2.69 AT5G19090.5
Heavy metal transport/detoxification superfamily protein
Chr1_+_23730106 2.68 AT1G63940.4
AT1G63940.3
monodehydroascorbate reductase 6
Chr3_-_5812690 2.67 AT3G17040.2
AT3G17040.4
AT3G17040.3
AT3G17040.1
high chlorophyll fluorescent 107
Chr1_+_23729875 2.63 AT1G63940.2
AT1G63940.1
monodehydroascorbate reductase 6
Chr1_+_4084162 2.62 AT1G12080.1
AT1G12080.2
Vacuolar calcium-binding protein-like protein
Chr2_-_18706266 2.61 AT2G45400.4
AT2G45400.2
AT2G45400.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_+_15127265 2.60 AT2G36026.1
Ovate family protein
Chr1_-_3443957 2.59 AT1G10470.3
AT1G10470.2
response regulator 4
Chr3_+_20880016 2.58 AT3G56300.2
AT3G56300.3
AT3G56300.1
Cysteinyl-tRNA synthetase, class Ia family protein
Chr2_+_16011233 2.57 AT2G38230.1
pyridoxine biosynthesis 1.1
Chr1_-_3444360 2.57 AT1G10470.1
response regulator 4
Chr1_-_29716255 2.57 AT1G78995.1
hypothetical protein
Chr2_+_15686650 2.56 AT2G37380.1
membrane-associated kinase regulator
Chr5_-_740319 2.54 AT5G03140.1
Concanavalin A-like lectin protein kinase family protein
Chr1_+_195812 2.52 AT1G01540.1
Protein kinase superfamily protein
Chr5_+_19179881 2.51 AT5G47230.1
ethylene responsive element binding factor 5
Chr1_+_195645 2.51 AT1G01540.2
Protein kinase superfamily protein
Chr5_+_4156501 2.48 AT5G13100.1
Gap junction beta-4 protein
Chr2_+_18495215 2.48 AT2G44840.1
ethylene-responsive element binding factor 13
Chr3_+_168408 2.46 AT3G01440.1
PsbQ-like 1
Chr4_-_12945052 2.46 AT4G25290.1
DNA photolyase
Chr1_-_22249721 2.43 AT1G60390.1
polygalacturonase 1
Chr1_+_26727555 2.42 AT1G70895.2
AT1G70895.1
CLAVATA3/ESR-RELATED 17
Chr5_+_22175461 2.37 AT5G54585.1
hypothetical protein
Chr5_-_2845530 2.37 AT5G08720.1
polyketide cyclase/dehydrase/lipid transporter
Chr4_+_15779911 2.37 AT4G32710.1
Protein kinase superfamily protein
Chr1_+_3611490 2.36 AT1G10850.1
Leucine-rich repeat protein kinase family protein
Chr2_-_14546879 2.33 AT2G34510.2
AT2G34510.1
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr3_+_6313471 2.31 AT3G18390.1
CRS1 / YhbY (CRM) domain-containing protein
Chr3_+_20547661 2.31 AT3G55420.1
hypothetical protein
Chr3_+_22786022 2.30 AT3G61580.1
Fatty acid/sphingolipid desaturase
Chr3_-_23319636 2.28 AT3G63110.1
isopentenyltransferase 3
Chr1_-_18378634 2.28 AT1G49650.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_10838395 2.27 AT3G28840.1
hypothetical protein (DUF1216)
Chr2_-_2272452 2.27 AT2G05920.1
Subtilase family protein
Chr4_+_15875342 2.27 AT4G32890.1
GATA transcription factor 9
Chr2_+_11279913 2.25 AT2G26520.1
transmembrane protein
Chr1_-_9890875 2.25 AT1G28290.2
AT1G28290.1
arabinogalactan protein 31
Chr5_-_22194559 2.22 AT5G54630.1
zinc finger protein-like protein
Chr1_+_23696720 2.21 AT1G63850.1
BTB/POZ domain-containing protein
Chr1_-_17719499 2.20 AT1G48030.1
AT1G48030.3
AT1G48030.4
AT1G48030.5
mitochondrial lipoamide dehydrogenase 1
Chr1_-_17719141 2.19 AT1G48030.2
mitochondrial lipoamide dehydrogenase 1
Chr1_+_8212556 2.19 AT1G23170.2
transmembrane protein (Protein of unknown function DUF2359, transmembrane)
Chr5_+_359107 2.17 AT5G01920.2
AT5G01920.1
Protein kinase superfamily protein
Chr2_-_9444428 2.17 AT2G22200.1
Integrase-type DNA-binding superfamily protein
Chr1_-_23892193 2.17 AT1G64380.1
Integrase-type DNA-binding superfamily protein
Chr4_+_1374160 2.17 AT4G03100.1
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr1_+_20048434 2.15 AT1G53700.1
WAG 1
Chr4_-_17123855 2.15 AT4G36180.1
Leucine-rich receptor-like protein kinase family protein
Chr1_+_18542061 2.12 AT1G50040.1
formin-like protein, putative (DUF1005)
Chr1_-_1437763 2.12 AT1G05020.1
ENTH/ANTH/VHS superfamily protein
Chr5_+_4608745 2.09 AT5G14280.1
DNA-binding storekeeper-like protein
Chr3_+_22776242 2.06 AT3G61550.1
RING/U-box superfamily protein
Chr4_-_15718858 2.05 AT4G32570.2
AT4G32570.1
TIFY domain protein 8
Chr1_+_6679281 2.05 AT1G19320.1
Pathogenesis-related thaumatin superfamily protein
Chr1_+_8212724 2.04 AT1G23170.1
transmembrane protein (Protein of unknown function DUF2359, transmembrane)
Chr3_+_20028052 2.03 AT3G54090.1
fructokinase-like 1
Chr3_+_22373013 2.03 AT3G60530.1
GATA transcription factor 4
Chr3_-_22933362 2.03 AT3G61920.1
UvrABC system protein C
Chr4_+_12686459 2.01 AT4G24570.1
dicarboxylate carrier 2
Chr2_-_14325205 2.00 AT2G33855.1
transmembrane protein
Chr3_+_23334574 1.99 AT3G63170.1
Chalcone-flavanone isomerase family protein
Chr2_+_18537177 1.99 AT2G44940.1
Integrase-type DNA-binding superfamily protein
Chr5_-_17258077 1.98 AT5G43020.1
Leucine-rich repeat protein kinase family protein
Chr3_+_17762970 1.98 AT3G48110.1
glycine-tRNA ligase
Chr3_+_17961266 1.97 AT3G48490.1
hypothetical protein
Chr3_-_22412663 1.97 AT3G60630.1
GRAS family transcription factor
Chr3_+_19039980 1.97 AT3G51290.1
pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
Chr3_-_16534265 1.95 AT3G45160.1
Putative membrane lipoprotein
Chr5_-_21154395 1.94 AT5G52060.1
BCL-2-associated athanogene 1
Chr5_-_23785512 1.91 AT5G58900.1
Homeodomain-like transcriptional regulator
Chr1_+_11607854 1.91 AT1G32220.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_23806656 1.90 AT5G58960.3
glucose-6-phosphate isomerase, putative (DUF641)
Chr2_+_11178064 1.88 AT2G26260.1
AT2G26260.2
3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
Chr1_-_12358966 1.88 AT1G34000.1
one-helix protein 2
Chr1_+_28668664 1.87 AT1G76410.1
RING/U-box superfamily protein
Chr1_+_9996713 1.86 AT1G28440.1
HAESA-like 1
Chr5_+_23806275 1.86 AT5G58960.2
glucose-6-phosphate isomerase, putative (DUF641)
Chr1_+_591682 1.86 AT1G02720.1
AT1G02720.2
galacturonosyltransferase 5
Chr2_+_19662715 1.85 AT2G48070.1
AT2G48070.3
AT2G48070.2
resistance to phytophthora 1
Chr1_-_5212349 1.84 AT1G15140.1
AT1G15140.3
AT1G15140.2
FAD/NAD(P)-binding oxidoreductase
Chr5_+_16161449 1.83 AT5G40390.1
Raffinose synthase family protein
Chr1_-_8763410 1.81 AT1G24764.1
AT1G24764.2
AT1G24764.3
microtubule-associated proteins 70-2
Chr1_+_24385552 1.81 AT1G65590.1
beta-hexosaminidase 3
Chr4_+_14378706 1.81 AT4G29150.1
IQ-domain 25
Chr3_+_5547492 1.81 AT3G16350.1
Homeodomain-like superfamily protein
Chr5_-_6234251 1.79 AT5G18690.1
arabinogalactan protein 25
Chr2_+_1993038 1.77 AT2G05440.2
AT2G05440.9
AT2G05440.5
AT2G05440.1
AT2G05440.6
AT2G05440.3
AT2G05440.4
AT2G05440.8
AT2G05440.7
GLYCINE RICH PROTEIN 9
Chr1_+_5448611 1.76 AT1G15830.1
AT1G15830.3
hypothetical protein
Chr5_+_21865268 1.76 AT5G53860.1
AT5G53860.4
AT5G53860.3
AT5G53860.5
embryo defective 2737
Chr3_+_19039512 1.75 AT3G51290.3
AT3G51290.2
pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
Chr5_-_24987811 1.75 AT5G62210.1
Embryo-specific protein 3, (ATS3)
Chr5_-_5144580 1.72 AT5G15770.1
glucose-6-phosphate acetyltransferase 1
Chr1_+_6254094 1.71 AT1G18170.1
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_28241011 1.70 AT1G75240.1
homeobox protein 33
Chr4_-_17530589 1.69 AT4G37250.1
Leucine-rich repeat protein kinase family protein
Chr4_+_8553643 1.69 AT4G14970.3
AT4G14970.6
AT4G14970.5
AT4G14970.2
AT4G14970.4
AT4G14970.1
fanconi anemia group D2 protein
Chr3_+_8970632 1.69 AT3G24590.2
AT3G24590.1
plastidic type i signal peptidase 1
Chr3_-_5605765 1.68 AT3G16490.1
IQ-domain 26
Chr1_+_28970714 1.68 AT1G77110.1
AT1G77110.2
Auxin efflux carrier family protein
Chr4_-_6796398 1.68 AT4G11140.1
cytokinin response factor 1
Chr5_+_2455593 1.67 AT5G07720.1
Galactosyl transferase GMA12/MNN10 family protein
Chr5_-_15011257 1.66 AT5G37790.1
Protein kinase superfamily protein
Chr5_+_23805717 1.64 AT5G58960.1
glucose-6-phosphate isomerase, putative (DUF641)
Chr1_+_11144772 1.64 AT1G31190.1
myo-inositol monophosphatase like 1
Chr4_-_8165214 1.63 AT4G14150.1
phragmoplast-associated kinesin-related protein 1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G63090

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 7.0 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
1.6 14.4 GO:0051513 regulation of monopolar cell growth(GO:0051513)
1.5 9.1 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
1.1 4.3 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
1.0 6.2 GO:0009650 UV protection(GO:0009650)
0.9 3.7 GO:0033306 phytol metabolic process(GO:0033306)
0.8 4.1 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.8 4.8 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.6 2.6 GO:0006423 cysteinyl-tRNA aminoacylation(GO:0006423)
0.6 3.1 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.6 1.9 GO:1903428 positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.5 3.8 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.5 1.6 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.5 2.6 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.5 9.8 GO:0006949 syncytium formation(GO:0006949)
0.5 2.0 GO:0099636 cytoplasmic streaming(GO:0099636)
0.5 2.0 GO:0006426 glycyl-tRNA aminoacylation(GO:0006426)
0.4 1.3 GO:1900151 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.4 2.2 GO:0042549 photosystem II stabilization(GO:0042549)
0.4 4.4 GO:0010206 photosystem II repair(GO:0010206)
0.4 1.9 GO:1901006 ubiquinone-6 metabolic process(GO:1901004) ubiquinone-6 biosynthetic process(GO:1901006)
0.4 1.1 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.4 1.4 GO:0034389 lipid particle organization(GO:0034389)
0.3 1.0 GO:0006059 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.3 1.3 GO:0045682 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.3 1.7 GO:0009647 skotomorphogenesis(GO:0009647)
0.3 1.6 GO:1902407 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.3 4.8 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.3 2.1 GO:0000055 ribosomal large subunit export from nucleus(GO:0000055)
0.2 9.2 GO:0042335 cuticle development(GO:0042335)
0.2 1.7 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 1.6 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 1.1 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.2 6.9 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.2 3.5 GO:0051346 negative regulation of hydrolase activity(GO:0051346)
0.2 1.7 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.2 1.2 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.2 7.0 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.2 9.6 GO:0016485 protein processing(GO:0016485)
0.2 0.9 GO:0046622 positive regulation of organ growth(GO:0046622)
0.2 2.4 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.2 1.3 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.2 2.0 GO:0042793 transcription from plastid promoter(GO:0042793)
0.2 1.9 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.2 3.7 GO:0030148 sphingolipid biosynthetic process(GO:0030148)
0.2 2.6 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.1 2.7 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 2.7 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 2.1 GO:0032409 regulation of transporter activity(GO:0032409)
0.1 1.8 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 11.9 GO:0045490 pectin catabolic process(GO:0045490)
0.1 1.3 GO:0030026 intracellular sequestering of iron ion(GO:0006880) cellular manganese ion homeostasis(GO:0030026) sequestering of iron ion(GO:0097577)
0.1 3.4 GO:0009959 negative gravitropism(GO:0009959)
0.1 1.2 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.1 6.2 GO:0048825 cotyledon development(GO:0048825)
0.1 7.7 GO:0007267 cell-cell signaling(GO:0007267)
0.1 2.1 GO:0010207 photosystem II assembly(GO:0010207)
0.1 2.7 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 1.1 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.1 2.8 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 1.9 GO:0010030 positive regulation of seed germination(GO:0010030)
0.1 1.9 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.1 1.0 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.1 1.1 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 0.3 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 5.1 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.1 2.3 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.1 0.4 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 1.1 GO:0010039 response to iron ion(GO:0010039)
0.1 5.9 GO:0009627 systemic acquired resistance(GO:0009627)
0.1 0.4 GO:0030104 water homeostasis(GO:0030104)
0.1 0.2 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.1 1.2 GO:0010152 pollen maturation(GO:0010152)
0.1 1.2 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.1 0.9 GO:0046855 response to nutrient(GO:0007584) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.1 0.3 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.1 6.7 GO:0080167 response to karrikin(GO:0080167)
0.1 0.2 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.1 0.3 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.1 1.1 GO:0019852 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.1 2.0 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 1.7 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 0.2 GO:0046519 sphingoid metabolic process(GO:0046519)
0.1 0.4 GO:0032456 endocytic recycling(GO:0032456)
0.1 2.5 GO:0009767 photosynthetic electron transport chain(GO:0009767)
0.1 0.5 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 1.2 GO:0048768 root hair cell tip growth(GO:0048768)
0.0 1.4 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.6 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 0.4 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 1.4 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 3.9 GO:0018105 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.5 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.9 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.5 GO:0043467 regulation of generation of precursor metabolites and energy(GO:0043467)
0.0 0.8 GO:0051782 negative regulation of cell division(GO:0051782)
0.0 0.3 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.0 1.2 GO:0048767 root hair elongation(GO:0048767)
0.0 1.2 GO:0009955 adaxial/abaxial pattern specification(GO:0009955)
0.0 0.2 GO:0031333 negative regulation of protein complex assembly(GO:0031333)
0.0 0.2 GO:0072530 purine-containing compound transmembrane transport(GO:0072530)
0.0 1.3 GO:0010075 regulation of meristem growth(GO:0010075)
0.0 0.3 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.0 0.3 GO:0009827 plant-type cell wall modification(GO:0009827)
0.0 0.5 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.0 2.5 GO:0015979 photosynthesis(GO:0015979)
0.0 0.9 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0048830 adventitious root development(GO:0048830)
0.0 0.3 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.4 GO:0006298 mismatch repair(GO:0006298)
0.0 0.5 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.1 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.6 GO:0006289 nucleotide-excision repair(GO:0006289)
0.0 7.3 GO:0006412 translation(GO:0006412)
0.0 0.3 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 3.8 GO:0046686 response to cadmium ion(GO:0046686)
0.0 1.8 GO:0009658 chloroplast organization(GO:0009658)
0.0 0.1 GO:0051865 protein autoubiquitination(GO:0051865)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 8.1 GO:0000311 plastid large ribosomal subunit(GO:0000311)
1.1 3.4 GO:0043673 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
1.1 4.3 GO:0044420 extracellular matrix component(GO:0044420) pollen coat(GO:0070505)
0.4 6.0 GO:0031012 extracellular matrix(GO:0031012)
0.4 16.9 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.4 2.9 GO:0009538 photosystem I reaction center(GO:0009538)
0.3 2.7 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.3 4.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.2 11.0 GO:0010287 plastoglobule(GO:0010287)
0.2 25.4 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.2 2.7 GO:0055028 cortical microtubule(GO:0055028)
0.1 5.3 GO:0010319 stromule(GO:0010319)
0.1 1.3 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 1.9 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.1 1.1 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 22.6 GO:0009505 plant-type cell wall(GO:0009505)
0.1 7.6 GO:0005874 microtubule(GO:0005874)
0.1 8.3 GO:0099503 secretory vesicle(GO:0099503)
0.1 1.4 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 0.9 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 2.2 GO:0009504 cell plate(GO:0009504)
0.1 13.4 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.1 0.3 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.1 1.5 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 7.3 GO:0009579 thylakoid(GO:0009579)
0.1 0.4 GO:0035619 root hair tip(GO:0035619)
0.0 0.1 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.3 GO:0005845 mRNA cap binding complex(GO:0005845)
0.0 0.8 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.8 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.4 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.4 GO:0009986 cell surface(GO:0009986)
0.0 0.2 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 9.1 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.7 GO:0071011 precatalytic spliceosome(GO:0071011)
0.0 0.4 GO:0005801 cis-Golgi network(GO:0005801)
0.0 2.7 GO:0031969 chloroplast membrane(GO:0031969)
0.0 0.9 GO:1902554 serine/threonine protein kinase complex(GO:1902554)
0.0 3.6 GO:0048046 apoplast(GO:0048046)
0.0 7.4 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.0 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.9 GO:0005615 extracellular space(GO:0005615)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 14.4 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
1.5 6.0 GO:0050162 oxalate oxidase activity(GO:0050162)
1.3 5.3 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
1.2 3.6 GO:0015204 urea transmembrane transporter activity(GO:0015204)
1.1 4.3 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.9 2.6 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.6 2.6 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
0.6 1.8 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.5 2.7 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.5 2.7 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.5 4.8 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.5 2.0 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.5 1.9 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.5 1.4 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.5 3.7 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.4 1.3 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.4 3.7 GO:0043495 protein anchor(GO:0043495)
0.4 1.2 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.4 2.5 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.4 1.6 GO:0052834 inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate phosphatase activity(GO:0052834)
0.4 1.6 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.4 5.3 GO:0016872 intramolecular lyase activity(GO:0016872)
0.4 7.1 GO:0005199 structural constituent of cell wall(GO:0005199)
0.4 9.1 GO:0016168 chlorophyll binding(GO:0016168)
0.3 1.0 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.3 10.4 GO:0008266 poly(U) RNA binding(GO:0008266)
0.3 4.0 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.3 8.1 GO:0004565 beta-galactosidase activity(GO:0004565)
0.3 2.6 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.3 2.3 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.2 1.9 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 0.9 GO:0004445 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.2 12.6 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.2 2.6 GO:0019210 kinase inhibitor activity(GO:0019210)
0.2 3.6 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2 1.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.2 1.1 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.2 0.8 GO:0003680 AT DNA binding(GO:0003680)
0.2 1.2 GO:0010011 auxin binding(GO:0010011)
0.1 1.6 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 1.0 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 8.7 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 1.3 GO:0032041 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 0.9 GO:0003885 D-arabinono-1,4-lactone oxidase activity(GO:0003885)
0.1 1.1 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.1 1.5 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.1 4.8 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 5.2 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 7.6 GO:0004180 carboxypeptidase activity(GO:0004180)
0.1 2.1 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 0.4 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 10.6 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 2.7 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 1.7 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 6.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 3.1 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.1 4.3 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.1 0.5 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.1 1.0 GO:0002020 protease binding(GO:0002020)
0.1 1.9 GO:0008810 cellulase activity(GO:0008810)
0.1 1.3 GO:0005384 iron ion transmembrane transporter activity(GO:0005381) manganese ion transmembrane transporter activity(GO:0005384)
0.1 0.3 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.1 0.5 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.9 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.1 0.5 GO:0004096 catalase activity(GO:0004096)
0.1 3.2 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.1 2.4 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.1 0.5 GO:0009378 four-way junction helicase activity(GO:0009378)
0.0 0.1 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 3.0 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 0.6 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.2 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 1.3 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 1.3 GO:0005179 hormone activity(GO:0005179)
0.0 0.9 GO:0003954 NADH dehydrogenase activity(GO:0003954)
0.0 0.5 GO:0008097 5S rRNA binding(GO:0008097)
0.0 0.6 GO:0070628 proteasome binding(GO:0070628)
0.0 0.5 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.0 1.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 1.3 GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
0.0 1.6 GO:0043621 protein self-association(GO:0043621)
0.0 0.4 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.2 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.0 0.3 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 5.5 GO:0016746 transferase activity, transferring acyl groups(GO:0016746)
0.0 0.1 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.0 0.1 GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor(GO:0016647)
0.0 0.3 GO:0051087 chaperone binding(GO:0051087)
0.0 0.3 GO:0030145 manganese ion binding(GO:0030145)
0.0 10.0 GO:0005524 ATP binding(GO:0005524)
0.0 0.4 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.2 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.5 PID UPA UPAR PATHWAY Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling
0.3 1.9 PID AP1 PATHWAY AP-1 transcription factor network
0.1 1.3 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.1 0.4 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.0 0.5 PID FANCONI PATHWAY Fanconi anemia pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.4 8.1 REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION Genes involved in Influenza Viral RNA Transcription and Replication
0.3 0.9 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.1 0.5 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.0 0.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing