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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G46590

Z-value: 2.35

Transcription factors associated with AT3G46590

Gene Symbol Gene ID Gene Info
AT3G46590 TRF-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TRFL1arTal_v1_Chr3_+_17153747_171537470.384.8e-02Click!

Activity profile of AT3G46590 motif

Sorted Z-values of AT3G46590 motif

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr4_+_12461907_12461907 7.26 AT4G24000.1
cellulose synthase like G2
arTal_v1_Chr1_+_12917070_12917070 6.22 AT1G35230.1
arabinogalactan protein 5
arTal_v1_Chr4_+_12463312_12463312 5.89 AT4G24000.2
cellulose synthase like G2
arTal_v1_Chr2_-_19315241_19315343 5.11 AT2G47000.7
AT2G47000.1
AT2G47000.2
AT2G47000.4
AT2G47000.3
ATP binding cassette subfamily B4
arTal_v1_Chr2_+_1025_1025 4.47 AT2G01008.1
maternal effect embryo arrest protein
arTal_v1_Chr2_-_19315013_19315071 4.33 AT2G47000.5
AT2G47000.6
ATP binding cassette subfamily B4
arTal_v1_Chr5_+_8749680_8749680 3.98 AT5G25250.1
SPFH/Band 7/PHB domain-containing membrane-associated protein family
arTal_v1_Chr3_-_14196865_14196865 3.79 AT3G41762.1
hypothetical protein
arTal_v1_Chr3_+_16297979_16297979 3.60 AT3G44750.2
histone deacetylase 3
arTal_v1_Chr3_+_16297656_16297656 3.48 AT3G44750.1
histone deacetylase 3
arTal_v1_Chr4_+_7304323_7304323 3.41 AT4G12290.2
Copper amine oxidase family protein
arTal_v1_Chr2_-_9767_9767 3.40 AT2G01023.1
hypothetical protein
arTal_v1_Chr4_+_7303985_7303985 3.40 AT4G12290.1
Copper amine oxidase family protein
arTal_v1_Chr3_-_6403392_6403392 3.39 AT3G18600.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr3_+_19723350_19723350 3.32 AT3G53230.1
ATPase, AAA-type, CDC48 protein
arTal_v1_Chr3_+_14914008_14914008 3.26 AT3G42806.1

arTal_v1_Chr5_-_8186662_8186704 3.22 AT5G24160.2
AT5G24160.1
squalene monooxygenase 6
arTal_v1_Chr1_-_8855874_8855874 3.14 AT1G25260.1
Ribosomal protein L10 family protein
arTal_v1_Chr5_-_8186100_8186100 2.97 AT5G24160.3
squalene monooxygenase 6
arTal_v1_Chr2_-_14078744_14078772 2.95 AT2G33210.2
AT2G33210.1
heat shock protein 60-2
arTal_v1_Chr4_-_13106864_13106864 2.76 AT4G25730.1
FtsJ-like methyltransferase family protein
arTal_v1_Chr3_-_9918810_9918810 2.71 AT3G26910.2
AT3G26910.1
AT3G26910.3
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr4_-_17902160_17902282 2.70 AT4G38150.2
AT4G38150.3
AT4G38150.1
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr2_+_18374162_18374292 2.67 AT2G44500.1
AT2G44500.2
O-fucosyltransferase family protein
arTal_v1_Chr3_+_8668772_8668772 2.59 AT3G23990.1
heat shock protein 60
arTal_v1_Chr3_+_10076809_10076819 2.57 AT3G27280.1
AT3G27280.2
prohibitin 4
arTal_v1_Chr4_-_14086882_14086882 2.55 AT4G28510.1
prohibitin 1
arTal_v1_Chr1_-_6483646_6483646 2.51 AT1G18800.1
NAP1-related protein 2
arTal_v1_Chr3_-_3325046_3325085 2.42 AT3G10640.2
AT3G10640.1
SNF7 family protein
arTal_v1_Chr3_-_21092141_21092169 2.41 AT3G56990.3
AT3G56990.2
AT3G56990.1
embryo sac development arrest 7
arTal_v1_Chr1_-_28020049_28020059 2.39 AT1G74560.3
AT1G74560.1
NAP1-related protein 1
arTal_v1_Chr1_-_6506542_6506542 2.35 AT1G18850.1
hypothetical protein
arTal_v1_Chr4_+_17553310_17553310 2.34 AT4G37295.1
hypothetical protein
arTal_v1_Chr1_+_5317973_5317973 2.32 AT1G15480.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_-_4565335_4565335 2.30 AT3G13860.1
heat shock protein 60-3A
arTal_v1_Chr5_+_2928173_2928173 2.27 AT5G09420.1
translocon at the outer membrane of chloroplasts 64-V
arTal_v1_Chr2_-_13965531_13965531 2.26 AT2G32920.1
PDI-like 2-3
arTal_v1_Chr1_-_2977002_2977002 2.25 AT1G09210.1
calreticulin 1b
arTal_v1_Chr1_-_22400312_22400413 2.23 AT1G60850.3
AT1G60850.2
AT1G60850.4
AT1G60850.1
DNA-directed RNA polymerase family protein
arTal_v1_Chr3_+_7887276_7887286 2.22 AT3G22310.1
AT3G22310.2
putative mitochondrial RNA helicase 1
arTal_v1_Chr4_-_18437258_18437258 2.21 AT4G39740.1
Thioredoxin superfamily protein
arTal_v1_Chr5_+_2975436_2975436 2.18 AT5G09590.1
mitochondrial HSO70 2
arTal_v1_Chr4_-_13486858_13486858 2.15 AT4G26780.1
Co-chaperone GrpE family protein
arTal_v1_Chr3_-_4229752_4229752 2.10 AT3G13150.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_+_9475350_9475412 2.09 AT3G25890.2
AT3G25890.1
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_-_883599_883599 2.09 AT1G03530.1
nuclear assembly factor 1
arTal_v1_Chr2_-_9866562_9866562 2.09 AT2G23170.1
Auxin-responsive GH3 family protein
arTal_v1_Chr1_-_9246652_9246652 2.04 AT1G26740.1
Ribosomal L32p protein family
arTal_v1_Chr1_+_8195776_8195776 2.03 AT1G23100.1
GroES-like family protein
arTal_v1_Chr3_+_20578922_20578922 2.02 AT3G55510.1
AT3G55510.2
Noc2p family
arTal_v1_Chr3_+_1539527_1539582 1.98 AT3G05380.4
AT3G05380.2
AT3G05380.3
AT3G05380.1
AT3G05380.5
ALWAYS EARLY 2
arTal_v1_Chr3_+_1021146_1021146 1.96 AT3G03950.2
AT3G03950.3
evolutionarily conserved C-terminal region 1
arTal_v1_Chr1_+_8962087_8962087 1.92 AT1G25520.1
Uncharacterized protein family (UPF0016)
arTal_v1_Chr5_+_1428597_1428597 1.91 AT5G04895.1
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr5_-_4415622_4415622 1.86 AT5G13680.1
IKI3 family protein
arTal_v1_Chr3_+_23412024_23412024 1.86 AT3G63400.4
AT3G63400.1
AT3G63400.3
AT3G63400.2
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
arTal_v1_Chr4_+_7453196_7453201 1.84 AT4G12600.1
AT4G12600.2
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
arTal_v1_Chr3_+_1021405_1021405 1.83 AT3G03950.1
evolutionarily conserved C-terminal region 1
arTal_v1_Chr4_-_12587384_12587458 1.82 AT4G24270.3
AT4G24270.1
AT4G24270.4
AT4G24270.2
EMBRYO DEFECTIVE 140
arTal_v1_Chr1_-_29680757_29680757 1.82 AT1G78930.1
Mitochondrial transcription termination factor family protein
arTal_v1_Chr3_-_4663363_4663363 1.80 AT3G14070.1
cation exchanger 9
arTal_v1_Chr3_-_4018631_4018631 1.77 AT3G12650.1
transmembrane protein
arTal_v1_Chr2_+_8293640_8293640 1.77 AT2G19130.1
S-locus lectin protein kinase family protein
arTal_v1_Chr5_-_10295283_10295283 1.76 AT5G28300.1
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr3_+_5179358_5179392 1.76 AT3G15352.3
AT3G15352.2
AT3G15352.1
AT3G15352.4
cytochrome c oxidase 17
arTal_v1_Chr5_-_16317291_16317291 1.76 AT5G40770.1
prohibitin 3
arTal_v1_Chr5_-_3036596_3036596 1.73 AT5G09770.1
Ribosomal protein L17 family protein
arTal_v1_Chr5_+_22394550_22394550 1.70 AT5G55200.1
Co-chaperone GrpE family protein
arTal_v1_Chr4_+_7214577_7214710 1.65 AT4G12040.1
AT4G12040.2
A20/AN1-like zinc finger family protein
arTal_v1_Chr1_-_27026363_27026363 1.65 AT1G71850.1
Ubiquitin carboxyl-terminal hydrolase family protein
arTal_v1_Chr5_-_20676702_20676702 1.63 AT5G50810.1
translocase inner membrane subunit 8
arTal_v1_Chr1_-_25095526_25095638 1.62 AT1G67120.2
AT1G67120.1
midasin-like protein
arTal_v1_Chr1_-_12104660_12104680 1.62 AT1G33390.2
AT1G33390.1
RNA helicase family protein
arTal_v1_Chr5_+_22714471_22714471 1.61 AT5G56090.1
cytochrome c oxidase 15
arTal_v1_Chr3_-_8608297_8608297 1.60 AT3G23830.2
AT3G23830.1
glycine-rich RNA-binding protein 4
arTal_v1_Chr1_-_28223785_28223785 1.53 AT1G75200.1
flavodoxin family protein / radical SAM domain-containing protein
arTal_v1_Chr1_-_1718909_1718909 1.52 AT1G05720.1
selenoprotein family protein
arTal_v1_Chr5_-_25841023_25841023 1.51 AT5G64650.1
Ribosomal protein L17 family protein
arTal_v1_Chr3_-_11299695_11299695 1.48 AT3G29400.1
exocyst subunit exo70 family protein E1
arTal_v1_Chr3_-_18290672_18290672 1.47 AT3G49320.1
AT3G49320.2
Metal-dependent protein hydrolase
arTal_v1_Chr1_+_22915699_22915699 1.47 AT1G62010.1
Mitochondrial transcription termination factor family protein
arTal_v1_Chr1_+_3862399_3862399 1.47 AT1G11475.1
RNA polymerases N / 8 kDa subunit
arTal_v1_Chr5_-_7633380_7633380 1.43 AT5G22840.1
Protein kinase superfamily protein
arTal_v1_Chr2_-_9508895_9508895 1.43 AT2G22400.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr2_-_18219559_18219559 1.42 AT2G44020.1
Mitochondrial transcription termination factor family protein
arTal_v1_Chr3_+_5175948_5176059 1.41 AT3G15351.1
AT3G15351.4
AT3G15351.5
AT3G15351.2
AT3G15351.3
AT3G15351.6
AT3G15351.7
P53/DNA damage-regulated protein
arTal_v1_Chr1_-_9528878_9528878 1.38 AT1G27435.1
hypothetical protein
arTal_v1_Chr4_-_2745635_2745635 1.38 AT4G05410.1
Transducin/WD40 repeat-like superfamily protein
arTal_v1_Chr1_+_3631_3631 1.37 AT1G01010.1
NAC domain containing protein 1
arTal_v1_Chr5_+_11380102_11380102 1.31 AT5G30495.1
Fcf2 pre-rRNA processing protein
arTal_v1_Chr1_-_7004432_7004432 1.31 AT1G20200.1
PAM domain (PCI/PINT associated module) protein
arTal_v1_Chr2_-_9179166_9179166 1.30 AT2G21440.1
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr4_+_7287803_7287803 1.29 AT4G12240.1
zinc finger (C2H2 type) family protein
arTal_v1_Chr3_+_812396_812402 1.28 AT3G03420.1
AT3G03420.2
Ku70-binding family protein
arTal_v1_Chr3_+_5050195_5050195 1.28 AT3G15000.1
cobalt ion binding protein
arTal_v1_Chr5_+_11379907_11379907 1.28 AT5G30495.2
Fcf2 pre-rRNA processing protein
arTal_v1_Chr2_-_8501294_8501294 1.27 AT2G19670.1
protein arginine methyltransferase 1A
arTal_v1_Chr4_-_15727977_15727977 1.27 AT4G32605.1
Mitochondrial glycoprotein family protein
arTal_v1_Chr3_+_6740695_6740695 1.25 AT3G19440.2
AT3G19440.1
Pseudouridine synthase family protein
arTal_v1_Chr4_+_13142088_13142164 1.25 AT4G25845.1
AT4G25850.2
oxysterol-binding 4B-like protein
OSBP(oxysterol binding protein)-related protein 4B
arTal_v1_Chr1_+_22343585_22343655 1.22 AT1G60670.2
AT1G60670.4
AT1G60670.3
AT1G60670.5
AT1G60670.1
hypothetical protein (DUF3755)
arTal_v1_Chr4_-_10689671_10689748 1.21 AT4G19640.2
AT4G19640.3
AT4G19640.1
Ras-related small GTP-binding family protein
arTal_v1_Chr3_-_6815403_6815403 1.20 AT3G19615.1
beta-1,4-xylosidase
arTal_v1_Chr4_-_1075893_1075930 1.19 AT4G02450.2
AT4G02450.1
HSP20-like chaperones superfamily protein
arTal_v1_Chr5_+_25912969_25912977 1.16 AT5G64816.3
AT5G64816.4
AT5G64816.1
AT5G64816.2
thionin-like protein
arTal_v1_Chr4_+_13557974_13557974 1.15 AT4G27010.1
AT4G27010.2
ribosome 60S biogenesis amino-terminal protein
arTal_v1_Chr4_+_18498202_18498216 1.12 AT4G39860.1
AT4G39860.3
hematological/neurological-like protein
arTal_v1_Chr5_-_9635174_9635174 1.10 AT5G27330.1
Prefoldin chaperone subunit family protein
arTal_v1_Chr5_+_22873666_22873668 1.08 AT5G56500.2
AT5G56500.1
TCP-1/cpn60 chaperonin family protein
arTal_v1_Chr1_+_5457084_5457084 1.08 AT1G15870.1
Mitochondrial glycoprotein family protein
arTal_v1_Chr3_-_4274436_4274487 1.07 AT3G13235.3
AT3G13235.1
AT3G13235.2
ubiquitin family protein
arTal_v1_Chr5_+_23967217_23967315 1.07 AT5G59430.2
AT5G59430.4
AT5G59430.3
telomeric repeat binding protein 1
arTal_v1_Chr5_+_15851389_15851389 1.06 AT5G39590.1
TLD-domain containing nucleolar protein
arTal_v1_Chr1_+_19963267_19963267 1.06 AT1G53490.1
RING/U-box superfamily protein
arTal_v1_Chr5_-_20823299_20823411 1.06 AT5G51220.3
AT5G51220.2
AT5G51220.1
ubiquinol-cytochrome C chaperone family protein
arTal_v1_Chr5_-_21263151_21263151 1.06 AT5G52380.1
VASCULAR-RELATED NAC-DOMAIN 6
arTal_v1_Chr1_-_4577967_4577967 1.04 AT1G13360.2
AT1G13360.3
hypothetical protein
arTal_v1_Chr1_-_4578369_4578369 1.03 AT1G13360.1
hypothetical protein
arTal_v1_Chr1_+_11783543_11783543 0.99 AT1G32580.1
plastid developmental protein DAG
arTal_v1_Chr3_-_13634029_13634029 0.99 AT3G33072.1

arTal_v1_Chr5_+_23967875_23967875 0.99 AT5G59430.5
telomeric repeat binding protein 1
arTal_v1_Chr1_+_1383841_1383841 0.98 AT1G04900.1
NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185)
arTal_v1_Chr5_+_23967611_23967611 0.98 AT5G59430.1
telomeric repeat binding protein 1
arTal_v1_Chr1_+_22911159_22911159 0.97 AT1G61990.1
AT1G61990.2
Mitochondrial transcription termination factor family protein
arTal_v1_Chr2_-_12165929_12166039 0.96 AT2G28450.1
AT2G28450.2
zinc finger (CCCH-type) family protein
arTal_v1_Chr3_+_16115498_16115682 0.96 AT3G44530.2
AT3G44530.3
AT3G44530.4
AT3G44530.1
histone chaperone HIRA-like protein
arTal_v1_Chr2_-_15864128_15864128 0.95 AT2G37890.1
Mitochondrial substrate carrier family protein
arTal_v1_Chr1_-_10645935_10645935 0.94 AT1G30240.1
proline-, glutamic acid/leucine-rich protein
arTal_v1_Chr3_+_15405984_15405984 0.93 AT3G43520.1
Transmembrane proteins 14C
arTal_v1_Chr5_-_4994_5156 0.93 AT5G01010.2
AT5G01010.5
AT5G01010.3
AT5G01010.4
AT5G01010.1
retinal-binding protein
arTal_v1_Chr1_-_10646195_10646195 0.91 AT1G30240.2
proline-, glutamic acid/leucine-rich protein
arTal_v1_Chr4_-_2517217_2517217 0.90 AT4G04940.1
transducin family protein / WD-40 repeat family protein
arTal_v1_Chr5_-_18886960_18886960 0.86 AT5G46550.1
DNA-binding bromodomain-containing protein
arTal_v1_Chr2_+_14668440_14668456 0.85 AT2G34780.2
AT2G34780.1
maternal effect embryo arrest 22
arTal_v1_Chr5_-_7394280_7394280 0.84 AT5G22330.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr1_+_30073524_30073580 0.83 AT1G79950.6
AT1G79950.5
AT1G79950.4
AT1G79950.2
AT1G79950.1
AT1G79950.3
AT1G79950.7
RAD3-like DNA-binding helicase protein
arTal_v1_Chr2_-_14880655_14880655 0.80 AT2G35345.1
hypothetical protein
arTal_v1_Chr3_+_9180244_9180244 0.77 AT3G25210.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_+_9171118_9171118 0.76 AT1G26550.1
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
arTal_v1_Chr4_+_897547_897547 0.75 AT4G02040.1
hypothetical protein
arTal_v1_Chr4_-_2516703_2516703 0.75 AT4G04940.2
transducin family protein / WD-40 repeat family protein
arTal_v1_Chr4_+_7975064_7975064 0.75 AT4G13750.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
arTal_v1_Chr5_+_21505074_21505074 0.74 AT5G53030.1
AT5G53030.2
hypothetical protein
arTal_v1_Chr3_-_17340543_17340543 0.72 AT3G47080.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_+_9854517_9854517 0.70 AT1G28210.3
AT1G28210.1
AT1G28210.2
DNAJ heat shock family protein
arTal_v1_Chr2_+_3618058_3618058 0.69 AT2G08986.1
hypothetical protein
arTal_v1_Chr1_+_7065494_7065494 0.64 AT1G20390.1

arTal_v1_Chr2_+_18149197_18149311 0.64 AT2G43810.2
AT2G43810.3
AT2G43810.1
Small nuclear ribonucleoprotein family protein
arTal_v1_Chr5_-_18954692_18954692 0.63 AT5G46710.1
AT5G46710.2
AT5G46710.3
PLATZ transcription factor family protein
arTal_v1_Chr4_-_6252293_6252314 0.62 AT4G09980.2
AT4G09980.1
Methyltransferase MT-A70 family protein
arTal_v1_Chr1_-_22093060_22093060 0.61 AT1G59990.2
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr1_-_27927962_27927962 0.60 AT1G74260.1
purine biosynthesis 4
arTal_v1_Chr1_-_22093385_22093385 0.59 AT1G59990.1
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr5_+_25400317_25400317 0.57 AT5G63420.1
RNA-metabolising metallo-beta-lactamase family protein
arTal_v1_Chr3_+_11073646_11073646 0.56 AT3G29090.1
pectin methylesterase 31
arTal_v1_Chr4_+_16431916_16431916 0.56 AT4G34360.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr1_+_19978101_19978146 0.54 AT1G53530.1
AT1G53530.2
Peptidase S24/S26A/S26B/S26C family protein
arTal_v1_Chr3_+_16271511_16271511 0.54 AT3G44720.1
arogenate dehydratase 4
arTal_v1_Chr2_+_14669164_14669164 0.52 AT2G34780.4
maternal effect embryo arrest 22
arTal_v1_Chr3_+_16138375_16138375 0.51 AT3G44550.2
fatty acid reductase 5
arTal_v1_Chr2_+_14669007_14669007 0.49 AT2G34780.3
maternal effect embryo arrest 22
arTal_v1_Chr3_-_9652936_9652936 0.46 AT3G26340.1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
arTal_v1_Chr4_-_6756595_6756595 0.45 AT4G11060.1
mitochondrially targeted single-stranded DNA binding protein
arTal_v1_Chr5_+_2681996_2681996 0.44 AT5G08335.1
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
arTal_v1_Chr3_+_18759348_18759463 0.44 AT3G50550.1
AT3G50550.2
hypothetical protein
arTal_v1_Chr2_+_17765178_17765178 0.43 AT2G42650.1
Ribosomal protein L1p/L10e family
arTal_v1_Chr3_+_4995941_4995941 0.43 AT3G14850.1
TRICHOME BIREFRINGENCE-LIKE 41
arTal_v1_Chr1_+_28085753_28085753 0.41 AT1G74750.3
AT1G74750.2
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_+_8301105_8301105 0.40 AT5G24350.1
AT5G24350.3
AT5G24350.2
neuroblastoma-amplified sequence protein
arTal_v1_Chr1_+_3948714_3948714 0.40 AT1G11710.1
AT1G11710.2
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_+_2682533_2682533 0.40 AT5G08335.2
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
arTal_v1_Chr2_+_13361502_13361502 0.39 AT2G31340.1
embryo defective 1381
arTal_v1_Chr3_+_4995426_4995426 0.37 AT3G14850.2
TRICHOME BIREFRINGENCE-LIKE 41
arTal_v1_Chr3_+_16137576_16137576 0.35 AT3G44550.1
fatty acid reductase 5
arTal_v1_Chr2_+_13873362_13873362 0.35 AT2G32710.2
AT2G32710.1
Cyclin-dependent kinase inhibitor family protein
arTal_v1_Chr1_+_4615767_4615767 0.35 AT1G13460.1
AT1G13460.2
Protein phosphatase 2A regulatory B subunit family protein
arTal_v1_Chr1_+_19965146_19965146 0.34 AT1G53490.2
RING/U-box superfamily protein
arTal_v1_Chr4_+_13354992_13354992 0.33 AT4G26430.1
COP9 signalosome subunit 6B
arTal_v1_Chr1_+_29173409_29173409 0.31 AT1G77630.1
Peptidoglycan-binding LysM domain-containing protein
arTal_v1_Chr5_+_6112738_6112738 0.28 AT5G18440.2
AT5G18440.1
GATA zinc finger protein
arTal_v1_Chr4_-_10870382_10870382 0.28 AT4G20090.2
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_-_29879204_29879279 0.27 AT1G79430.1
AT1G79430.2
Homeodomain-like superfamily protein
arTal_v1_Chr2_-_12928009_12928009 0.26 AT2G30320.1
Pseudouridine synthase family protein
arTal_v1_Chr3_-_5015342_5015342 0.23 AT3G14900.1
hypothetical protein
arTal_v1_Chr5_+_17469490_17469602 0.22 AT5G43500.2
AT5G43500.3
AT5G43500.1
AT5G43500.4
actin-related protein 9
arTal_v1_Chr4_-_7243228_7243228 0.21 AT4G12090.1
Cornichon family protein
arTal_v1_Chr1_-_966704_966790 0.21 AT1G03830.1
AT1G03830.2
guanylate-binding family protein
arTal_v1_Chr4_-_13690478_13690538 0.21 AT4G27340.2
AT4G27340.3
AT4G27340.1
Met-10+ like family protein
arTal_v1_Chr5_-_26970668_26970668 0.19 AT5G67640.1
hypothetical protein
arTal_v1_Chr5_-_2578310_2578310 0.18 AT5G08040.1
mitochondrial import receptor subunit TOM5-like protein
arTal_v1_Chr3_-_9935499_9935499 0.18 AT3G26935.1
DHHC-type zinc finger family protein
arTal_v1_Chr4_-_10870651_10870651 0.17 AT4G20090.1
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_+_28086800_28086800 0.15 AT1G74750.4
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_+_23227532_23227532 0.14 AT1G62720.1
Pentatricopeptide repeat (PPR-like) superfamily protein
arTal_v1_Chr4_+_13489806_13489835 0.10 AT4G26800.2
AT4G26800.1
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_-_30280359_30280359 0.10 AT1G80530.1
Major facilitator superfamily protein
arTal_v1_Chr1_-_23267221_23267221 0.08 AT1G62830.1
LSD1-like 1
arTal_v1_Chr2_-_549510_549669 0.05 AT2G02148.3
AT2G02148.2
AT2G02148.1
AT2G02148.5
AT2G02148.4
PPR containing protein
arTal_v1_Chr5_+_15895682_15895682 0.04 AT5G39710.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_6310058_6310058 0.04 AT5G18920.1
AT5G18920.2
Cox19-like CHCH family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G46590

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 9.4 GO:0060919 auxin influx(GO:0060919)
1.1 3.3 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
1.0 4.0 GO:0010324 membrane invagination(GO:0010324)
0.8 3.2 GO:0000491 small nucleolar ribonucleoprotein complex assembly(GO:0000491)
0.6 1.9 GO:0080178 5-carbamoylmethyl uridine residue modification(GO:0080178)
0.6 4.9 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.5 1.8 GO:0043157 response to cation stress(GO:0043157)
0.4 13.2 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.4 11.8 GO:0042026 protein refolding(GO:0042026)
0.4 4.5 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.4 1.5 GO:0009304 tRNA transcription(GO:0009304)
0.4 1.1 GO:0097033 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.3 2.2 GO:0019079 viral genome replication(GO:0019079)
0.3 1.3 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.3 2.2 GO:0097034 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.3 7.1 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.3 1.8 GO:0071731 response to nitric oxide(GO:0071731)
0.2 5.9 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.2 0.8 GO:0006481 C-terminal protein methylation(GO:0006481)
0.2 3.8 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.2 1.0 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.2 1.9 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.2 6.2 GO:0016126 sterol biosynthetic process(GO:0016126)
0.2 1.8 GO:0006825 copper ion transport(GO:0006825)
0.1 6.5 GO:0030490 maturation of SSU-rRNA(GO:0030490)
0.1 1.1 GO:0070131 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.1 2.4 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.1 3.0 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.1 0.6 GO:0080009 mRNA methylation(GO:0080009)
0.1 1.3 GO:0016554 cytidine to uridine editing(GO:0016554)
0.1 0.3 GO:0050996 positive regulation of fatty acid beta-oxidation(GO:0032000) positive regulation of lipid catabolic process(GO:0050996)
0.1 1.4 GO:0060321 acceptance of pollen(GO:0060321)
0.1 2.2 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.1 2.0 GO:0051085 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.1 1.4 GO:0051026 chiasma assembly(GO:0051026)
0.1 0.5 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 0.6 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 2.1 GO:0010252 auxin homeostasis(GO:0010252)
0.1 0.9 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.1 2.0 GO:0010582 floral meristem determinacy(GO:0010582)
0.1 1.6 GO:0006783 heme biosynthetic process(GO:0006783)
0.1 1.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.1 1.9 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 0.3 GO:0010387 COP9 signalosome assembly(GO:0010387)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.5 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 2.3 GO:0034976 response to endoplasmic reticulum stress(GO:0034976)
0.0 1.8 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.6 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.3 GO:0010088 phloem development(GO:0010088)
0.0 0.8 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 1.2 GO:0007033 vacuole organization(GO:0007033)
0.0 1.5 GO:0006887 exocytosis(GO:0006887)
0.0 0.4 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 2.4 GO:0006364 rRNA processing(GO:0006364)
0.0 0.5 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 1.0 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.0 2.0 GO:0051726 regulation of cell cycle(GO:0051726)
0.0 0.8 GO:0006400 tRNA modification(GO:0006400)
0.0 0.6 GO:0055046 microgametogenesis(GO:0055046)
0.0 0.2 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 1.7 GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0030689 Noc complex(GO:0030689)
0.6 3.8 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.6 3.3 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.5 1.4 GO:0005712 chiasma(GO:0005712)
0.3 2.0 GO:0017053 transcriptional repressor complex(GO:0017053)
0.3 1.0 GO:0030874 nucleolar chromatin(GO:0030874)
0.3 1.7 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.3 1.9 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.2 3.4 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.2 1.8 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.2 2.7 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.2 0.8 GO:0000812 Swr1 complex(GO:0000812)
0.2 3.7 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.2 3.0 GO:0031965 nuclear membrane(GO:0031965)
0.1 3.8 GO:0032040 small-subunit processome(GO:0032040)
0.1 1.2 GO:0030139 endocytic vesicle(GO:0030139)
0.1 4.0 GO:0098590 plasma membrane region(GO:0098590)
0.1 6.9 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.1 11.7 GO:0005759 mitochondrial matrix(GO:0005759)
0.1 1.5 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.1 1.3 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.1 0.4 GO:0030686 90S preribosome(GO:0030686)
0.1 1.1 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 13.2 GO:0005802 trans-Golgi network(GO:0005802)
0.0 1.5 GO:0000145 exocyst(GO:0000145)
0.0 1.8 GO:0030659 cytoplasmic vesicle membrane(GO:0030659)
0.0 0.5 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 15.4 GO:0016021 integral component of membrane(GO:0016021)
0.0 13.2 GO:0005730 nucleolus(GO:0005730)
0.0 3.2 GO:0015934 large ribosomal subunit(GO:0015934)
0.0 0.3 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 1.6 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 0.2 GO:0033202 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) INO80-type complex(GO:0097346)
0.0 2.2 GO:0033648 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.6 GO:0034708 methyltransferase complex(GO:0034708)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 2.2 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 37.1 GO:0005739 mitochondrion(GO:0005739)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 9.4 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.8 6.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.8 3.0 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.7 2.2 GO:0001056 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.4 13.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.3 1.6 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.3 3.8 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.3 2.1 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.3 1.8 GO:0016531 copper chaperone activity(GO:0016531)
0.3 1.4 GO:0034511 U3 snoRNA binding(GO:0034511)
0.2 0.8 GO:0003880 protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671)
0.2 7.1 GO:0033558 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.2 2.3 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.1 0.9 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 4.4 GO:0031593 polyubiquitin binding(GO:0031593)
0.1 1.1 GO:0097177 translation activator activity(GO:0008494) mitochondrial ribosome binding(GO:0097177)
0.1 1.9 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 2.2 GO:0051787 misfolded protein binding(GO:0051787)
0.1 8.4 GO:0003724 RNA helicase activity(GO:0003724)
0.1 1.8 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.1 2.3 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 0.5 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.1 1.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 2.0 GO:0051087 chaperone binding(GO:0051087)
0.1 1.9 GO:0000049 tRNA binding(GO:0000049)
0.0 1.0 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 2.9 GO:0051082 unfolded protein binding(GO:0051082)
0.0 1.5 GO:0010181 FMN binding(GO:0010181)
0.0 0.6 GO:0008409 5'-3' exonuclease activity(GO:0008409)
0.0 0.6 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 1.4 GO:0004707 MAP kinase activity(GO:0004707)
0.0 2.5 GO:0042393 histone binding(GO:0042393)
0.0 1.5 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 5.5 GO:0005507 copper ion binding(GO:0005507)
0.0 1.3 GO:0050897 cobalt ion binding(GO:0050897)
0.0 5.3 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.8 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.8 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.3 GO:0070122 isopeptidase activity(GO:0070122)
0.0 9.8 GO:0044822 mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822)
0.0 0.2 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 4.6 GO:0003723 RNA binding(GO:0003723)
0.0 1.2 GO:0032561 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.8 0.8 PID RAS PATHWAY Regulation of Ras family activation
0.6 4.0 SIG BCR SIGNALING PATHWAY Members of the BCR signaling pathway
0.1 0.8 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.9 9.4 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.4 1.8 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import