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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G09530

Z-value: 1.38

Transcription factors associated with AT1G09530

Gene Symbol Gene ID Gene Info
AT1G09530 phytochrome interacting factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIF3arTal_v1_Chr1_+_3075768_3075768-0.242.3e-01Click!

Activity profile of AT1G09530 motif

Sorted Z-values of AT1G09530 motif

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr3_+_5505360_5505360 3.65 AT3G16240.1
delta tonoplast integral protein
arTal_v1_Chr2_+_2763449_2763513 2.93 AT2G06850.1
AT2G06850.2
xyloglucan endotransglucosylase/hydrolase 4
arTal_v1_Chr3_-_21523375_21523518 2.77 AT3G58120.2
AT3G58120.1
Basic-leucine zipper (bZIP) transcription factor family protein
arTal_v1_Chr5_+_8863224_8863224 2.74 AT5G25460.1
transmembrane protein, putative (Protein of unknown function, DUF642)
arTal_v1_Chr5_+_625254_625254 2.35 AT5G02760.1
Protein phosphatase 2C family protein
arTal_v1_Chr2_+_9844134_9844230 2.32 AT2G23130.1
AT2G23130.2
arabinogalactan protein 17
arTal_v1_Chr1_-_983544_983544 2.22 AT1G03870.1
FASCICLIN-like arabinoogalactan 9
arTal_v1_Chr4_+_17243583_17243583 2.09 AT4G36540.2
AT4G36540.1
BR enhanced expression 2
arTal_v1_Chr2_-_7954680_7954785 2.04 AT2G18300.1
AT2G18300.3
AT2G18300.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr2_-_15137012_15137012 2.00 AT2G36050.1
ovate family protein 15
arTal_v1_Chr5_+_3889906_3889906 1.96 AT5G12050.1
rho GTPase-activating protein
arTal_v1_Chr1_-_6999839_6999839 1.92 AT1G20190.1
expansin 11
arTal_v1_Chr1_+_9740508_9740508 1.90 AT1G27950.1
glycosylphosphatidylinositol-anchored lipid protein transfer 1
arTal_v1_Chr1_-_6999523_6999523 1.77 AT1G20190.2
expansin 11
arTal_v1_Chr1_-_227302_227302 1.73 AT1G01620.2
plasma membrane intrinsic protein 1C
arTal_v1_Chr1_-_227543_227543 1.73 AT1G01620.1
plasma membrane intrinsic protein 1C
arTal_v1_Chr3_-_4744263_4744263 1.72 AT3G14240.1
Subtilase family protein
arTal_v1_Chr3_+_3698658_3698658 1.70 AT3G11700.1
FASCICLIN-like arabinogalactan protein 18 precursor
arTal_v1_Chr3_-_8290164_8290164 1.69 AT3G23230.1
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_-_16583075_16583075 1.67 AT4G34760.1
SAUR-like auxin-responsive protein family
arTal_v1_Chr1_-_1169034_1169034 1.64 AT1G04360.1
RING/U-box superfamily protein
arTal_v1_Chr3_-_2130451_2130451 1.62 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr1_-_4265156_4265156 1.61 AT1G12500.1
Nucleotide-sugar transporter family protein
arTal_v1_Chr5_+_4087689_4087689 1.58 AT5G12940.1
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr2_-_14302496_14302496 1.53 AT2G33800.1
Ribosomal protein S5 family protein
arTal_v1_Chr3_-_19467455_19467455 1.49 AT3G52500.1
Eukaryotic aspartyl protease family protein
arTal_v1_Chr5_+_22474142_22474142 1.48 AT5G55480.1
SHV3-like 1
arTal_v1_Chr5_-_5072492_5072492 1.48 AT5G15580.1
longifolia1
arTal_v1_Chr4_+_14192569_14192569 1.43 AT4G28720.1
Flavin-binding monooxygenase family protein
arTal_v1_Chr3_-_15617149_15617149 1.41 AT3G43720.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr5_-_3190321_3190321 1.40 AT5G10170.1
myo-inositol-1-phosphate synthase 3
arTal_v1_Chr1_-_28581315_28581315 1.40 AT1G76160.1
SKU5 similar 5
arTal_v1_Chr3_-_15617309_15617309 1.39 AT3G43720.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr4_-_14204061_14204061 1.37 AT4G28750.1
Photosystem I reaction centre subunit IV / PsaE protein
arTal_v1_Chr1_-_10306587_10306595 1.36 AT1G29450.2
AT1G29450.1
SAUR-like auxin-responsive protein family
arTal_v1_Chr4_-_9157133_9157133 1.33 AT4G16155.1
dihydrolipoamide dehydrogenase
arTal_v1_Chr3_-_1832190_1832190 1.32 AT3G06070.1
hypothetical protein
arTal_v1_Chr2_+_6399621_6399621 1.31 AT2G14890.2
arabinogalactan protein 9
arTal_v1_Chr5_+_7168106_7168106 1.30 AT5G21100.1
Plant L-ascorbate oxidase
arTal_v1_Chr3_-_4042075_4042075 1.30 AT3G12710.1
DNA glycosylase superfamily protein
arTal_v1_Chr2_+_9636346_9636492 1.29 AT2G22670.1
AT2G22670.4
AT2G22670.2
AT2G22670.5
AT2G22670.3
indoleacetic acid-induced protein 8
arTal_v1_Chr5_+_5975780_5975780 1.26 AT5G18060.1
SAUR-like auxin-responsive protein family
arTal_v1_Chr1_-_12053935_12053935 1.24 AT1G33240.2
GT-2-like 1
arTal_v1_Chr1_-_12054753_12054753 1.23 AT1G33240.1
AT1G33240.3
GT-2-like 1
arTal_v1_Chr3_+_8194606_8194711 1.22 AT3G23050.1
AT3G23050.3
AT3G23050.2
indole-3-acetic acid 7
arTal_v1_Chr1_-_24033600_24033674 1.15 AT1G64670.1
AT1G64670.3
AT1G64670.2
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr2_+_6399405_6399405 1.15 AT2G14890.1
arabinogalactan protein 9
arTal_v1_Chr1_+_4084162_4084162 1.15 AT1G12080.1
AT1G12080.2
Vacuolar calcium-binding protein-like protein
arTal_v1_Chr1_+_24035941_24035968 1.14 AT1G64680.1
AT1G64680.2
beta-carotene isomerase D27
arTal_v1_Chr3_-_2137012_2137085 1.14 AT3G06770.1
AT3G06770.5
Pectin lyase-like superfamily protein
arTal_v1_Chr3_+_22745514_22745514 1.14 AT3G61470.1
photosystem I light harvesting complex protein
arTal_v1_Chr3_-_2137280_2137350 1.13 AT3G06770.4
AT3G06770.3
Pectin lyase-like superfamily protein
arTal_v1_Chr4_+_15583332_15583363 1.12 AT4G32280.1
AT4G32280.2
AT4G32280.3
indole-3-acetic acid inducible 29
arTal_v1_Chr2_-_17837618_17837618 1.11 AT2G42870.1
phy rapidly regulated 1
arTal_v1_Chr4_-_9305763_9305845 1.11 AT4G16515.1
AT4G16515.2
root meristem growth factor
arTal_v1_Chr5_+_25159208_25159208 1.10 AT5G62670.1
H[+]-ATPase 11
arTal_v1_Chr5_+_9157142_9157142 1.08 AT5G26200.1
Mitochondrial substrate carrier family protein
arTal_v1_Chr5_-_4582856_4582856 1.07 AT5G14210.1
AT5G14210.2
AT5G14210.3
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr4_+_16591179_16591179 1.06 AT4G34770.1
SAUR-like auxin-responsive protein family
arTal_v1_Chr3_-_19442427_19442427 1.05 AT3G52450.1
plant U-box 22
arTal_v1_Chr3_-_8181853_8181853 1.04 AT3G23030.1
indole-3-acetic acid inducible 2
arTal_v1_Chr1_+_19434480_19434480 1.04 AT1G52190.1
Major facilitator superfamily protein
arTal_v1_Chr1_-_7040231_7040231 1.03 AT1G20330.1
sterol methyltransferase 2
arTal_v1_Chr3_-_8182095_8182095 1.02 AT3G23030.2
indole-3-acetic acid inducible 2
arTal_v1_Chr3_-_21411904_21411904 1.01 AT3G57800.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_-_21411612_21411612 1.01 AT3G57800.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr4_+_11663186_11663186 1.00 AT4G22010.1
SKU5 similar 4
arTal_v1_Chr3_+_256295_256295 1.00 AT3G01690.1
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr3_+_16569051_16569051 0.98 AT3G45230.1
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_+_11041331_11041331 0.95 AT2G25900.2
AT2G25900.1
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr1_-_25472346_25472346 0.94 AT1G67910.2
hypothetical protein
arTal_v1_Chr1_-_25472577_25472577 0.94 AT1G67910.1
hypothetical protein
arTal_v1_Chr2_+_8431363_8431444 0.93 AT2G19460.2
AT2G19460.1
DUF3511 domain protein (DUF3511)
arTal_v1_Chr3_-_1767620_1767620 0.93 AT3G05910.2
Pectinacetylesterase family protein
arTal_v1_Chr5_-_3963624_3963624 0.92 AT5G12250.1
beta-6 tubulin
arTal_v1_Chr3_-_1767843_1767843 0.92 AT3G05910.1
Pectinacetylesterase family protein
arTal_v1_Chr2_+_7301334_7301334 0.92 AT2G16850.1
plasma membrane intrinsic protein 2;8
arTal_v1_Chr2_+_12703469_12703469 0.91 AT2G29730.1
UDP-glucosyl transferase 71D1
arTal_v1_Chr5_-_5766246_5766246 0.90 AT5G17490.1
RGA-like protein 3
arTal_v1_Chr4_+_7480556_7480641 0.90 AT4G12690.2
AT4G12690.1
DUF868 family protein (DUF868)
arTal_v1_Chr3_+_22786022_22786022 0.89 AT3G61580.1
Fatty acid/sphingolipid desaturase
arTal_v1_Chr1_+_26742940_26742940 0.87 AT1G70940.1
Auxin efflux carrier family protein
arTal_v1_Chr1_-_8559066_8559066 0.87 AT1G24170.1
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr3_+_19930798_19930798 0.87 AT3G53800.1
AT3G53800.2
Fes1B
arTal_v1_Chr1_-_6860376_6860563 0.86 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
filament-like protein (DUF869)
arTal_v1_Chr1_+_4877506_4877506 0.86 AT1G14280.1
phytochrome kinase substrate 2
arTal_v1_Chr1_+_195812_195812 0.85 AT1G01540.1
Protein kinase superfamily protein
arTal_v1_Chr5_+_17550179_17550179 0.85 AT5G43700.1
AUX/IAA transcriptional regulator family protein
arTal_v1_Chr1_+_195645_195645 0.85 AT1G01540.2
Protein kinase superfamily protein
arTal_v1_Chr4_-_12937236_12937236 0.84 AT4G25260.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr4_+_15875342_15875342 0.84 AT4G32890.1
GATA transcription factor 9
arTal_v1_Chr1_-_28551836_28551836 0.82 AT1G76090.1
sterol methyltransferase 3
arTal_v1_Chr2_+_16927501_16927501 0.81 AT2G40530.1
transmembrane protein
arTal_v1_Chr1_+_24257216_24257216 0.80 AT1G65310.1
xyloglucan endotransglucosylase/hydrolase 17
arTal_v1_Chr3_-_399798_399798 0.80 AT3G02170.2
AT3G02170.3
longifolia2
arTal_v1_Chr2_-_15066001_15066056 0.80 AT2G35880.2
AT2G35880.1
AT2G35880.3
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr3_-_3862498_3862498 0.80 AT3G12120.2
fatty acid desaturase 2
arTal_v1_Chr1_+_24257054_24257054 0.80 AT1G65310.2
xyloglucan endotransglucosylase/hydrolase 17
arTal_v1_Chr1_+_30311527_30311666 0.78 AT1G80640.1
AT1G80640.2
Protein kinase superfamily protein
arTal_v1_Chr3_-_399960_399960 0.77 AT3G02170.1
longifolia2
arTal_v1_Chr2_+_15818082_15818082 0.76 AT2G37720.1
TRICHOME BIREFRINGENCE-LIKE 15
arTal_v1_Chr1_-_28064771_28064771 0.76 AT1G74690.1
IQ-domain 31
arTal_v1_Chr3_-_22811024_22811024 0.76 AT3G61640.1
arabinogalactan protein 20
arTal_v1_Chr5_+_5223934_5223934 0.76 AT5G16000.1
NSP-interacting kinase 1
arTal_v1_Chr3_+_5264001_5264001 0.75 AT3G15540.1
indole-3-acetic acid inducible 19
arTal_v1_Chr3_-_2137641_2137641 0.74 AT3G06770.2
Pectin lyase-like superfamily protein
arTal_v1_Chr1_+_17863660_17863660 0.74 AT1G48330.1
SsrA-binding protein
arTal_v1_Chr3_-_3863250_3863250 0.74 AT3G12120.1
fatty acid desaturase 2
arTal_v1_Chr5_-_22991530_22991530 0.74 AT5G56860.1
GATA type zinc finger transcription factor family protein
arTal_v1_Chr1_-_6859908_6859908 0.73 AT1G19835.2
filament-like protein (DUF869)
arTal_v1_Chr4_+_17515042_17515042 0.73 AT4G37220.1
Cold acclimation protein WCOR413 family
arTal_v1_Chr5_+_17798262_17798281 0.73 AT5G44190.2
AT5G44190.1
GOLDEN2-like 2
arTal_v1_Chr1_-_6860059_6860059 0.73 AT1G19835.5
filament-like protein (DUF869)
arTal_v1_Chr2_+_14066125_14066125 0.72 AT2G33180.1
hypothetical protein
arTal_v1_Chr3_+_5748497_5748497 0.72 AT3G16850.1
Pectin lyase-like superfamily protein
arTal_v1_Chr5_-_23785512_23785512 0.72 AT5G58900.1
Homeodomain-like transcriptional regulator
arTal_v1_Chr4_-_13460105_13460105 0.71 AT4G26690.1
PLC-like phosphodiesterase family protein
arTal_v1_Chr1_-_20668817_20668817 0.71 AT1G55360.1
tRNA-splicing ligase (DUF239)
arTal_v1_Chr1_+_29345851_29345851 0.71 AT1G78040.2
Pollen Ole e 1 allergen and extensin family protein
arTal_v1_Chr1_+_29345662_29345662 0.71 AT1G78040.3
Pollen Ole e 1 allergen and extensin family protein
arTal_v1_Chr4_-_1407402_1407402 0.70 AT4G03190.1
GRR1-like protein 1
arTal_v1_Chr5_-_18021508_18021508 0.68 AT5G44670.1
glycosyltransferase family protein (DUF23)
arTal_v1_Chr5_+_3193017_3193017 0.68 AT5G10180.1
slufate transporter 2;1
arTal_v1_Chr1_+_29344539_29344539 0.67 AT1G78040.1
Pollen Ole e 1 allergen and extensin family protein
arTal_v1_Chr1_+_29871326_29871326 0.67 AT1G79420.1
C-type mannose receptor (DUF620)
arTal_v1_Chr2_+_18883377_18883377 0.66 AT2G45890.1
RHO guanyl-nucleotide exchange factor 4
arTal_v1_Chr1_-_3820887_3820887 0.65 AT1G11350.1
S-domain-1 13
arTal_v1_Chr3_-_6901334_6901334 0.64 AT3G19850.1
Phototropic-responsive NPH3 family protein
arTal_v1_Chr1_-_28117405_28117422 0.63 AT1G74840.2
AT1G74840.1
Homeodomain-like superfamily protein
arTal_v1_Chr1_-_8842334_8842445 0.62 AT1G25230.1
AT1G25230.2
AT1G25230.3
Calcineurin-like metallo-phosphoesterase superfamily protein
arTal_v1_Chr1_-_22885052_22885125 0.61 AT1G61900.3
AT1G61900.2
AT1G61900.1
hypothetical protein
arTal_v1_Chr5_-_20236195_20236329 0.60 AT5G49800.2
AT5G49800.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr2_-_9326096_9326096 0.60 AT2G21880.3
AT2G21880.4
RAB GTPase homolog 7A
arTal_v1_Chr4_-_17640925_17640925 0.60 AT4G37540.1
LOB domain-containing protein 39
arTal_v1_Chr1_+_25558794_25558852 0.59 AT1G68190.2
AT1G68190.3
B-box zinc finger family protein
arTal_v1_Chr2_+_6404131_6404131 0.56 AT2G14900.1
Gibberellin-regulated family protein
arTal_v1_Chr1_-_18626441_18626441 0.56 AT1G50280.1
AT1G50280.2
Phototropic-responsive NPH3 family protein
arTal_v1_Chr1_+_25559245_25559245 0.55 AT1G68190.1
B-box zinc finger family protein
arTal_v1_Chr3_+_9843460_9843460 0.55 AT3G26760.1
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr3_-_2388675_2388696 0.55 AT3G07470.2
AT3G07470.1
AT3G07470.3
transmembrane protein, putative (Protein of unknown function, DUF538)
arTal_v1_Chr2_-_9326321_9326426 0.54 AT2G21880.2
AT2G21880.1
RAB GTPase homolog 7A
arTal_v1_Chr1_-_13714_13714 0.54 AT1G01030.2
AT1G01030.1
AP2/B3-like transcriptional factor family protein
arTal_v1_Chr2_+_9792166_9792212 0.54 AT2G23000.2
AT2G23000.1
serine carboxypeptidase-like 10
arTal_v1_Chr4_-_17334355_17334355 0.53 AT4G36780.1
BES1/BZR1 homolog 2
arTal_v1_Chr5_-_21285366_21285366 0.53 AT5G52430.1
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_+_18524311_18524370 0.53 AT2G44920.2
AT2G44920.1
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_+_8112614_8112614 0.52 AT3G22890.1
ATP sulfurylase 1
arTal_v1_Chr5_-_20345302_20345302 0.51 AT5G50000.2
AT5G50000.1
Protein kinase superfamily protein
arTal_v1_Chr5_+_22369007_22369007 0.50 AT5G55120.1
GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5)
arTal_v1_Chr2_+_18119873_18119962 0.50 AT2G43710.1
AT2G43710.2
Plant stearoyl-acyl-carrier-protein desaturase family protein
arTal_v1_Chr2_+_13497118_13497233 0.49 AT2G31750.1
AT2G31750.2
UDP-glucosyl transferase 74D1
arTal_v1_Chr4_-_13069762_13069762 0.49 AT4G25620.1
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_-_17800072_17800072 0.48 AT2G42770.1
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
arTal_v1_Chr3_-_193537_193537 0.47 AT3G01490.2
Protein kinase superfamily protein
arTal_v1_Chr3_-_2843781_2843781 0.47 AT3G09260.1
Glycosyl hydrolase superfamily protein
arTal_v1_Chr3_-_193721_193721 0.47 AT3G01490.1
Protein kinase superfamily protein
arTal_v1_Chr1_+_3849201_3849201 0.47 AT1G11440.1
hypothetical protein
arTal_v1_Chr2_+_16474923_16474923 0.46 AT2G39460.1
ribosomal protein L23AA
arTal_v1_Chr4_+_17785254_17785255 0.46 AT4G37820.1
AT4G37820.2
transmembrane protein
arTal_v1_Chr2_+_16474149_16474149 0.46 AT2G39460.2
ribosomal protein L23AA
arTal_v1_Chr1_-_28383769_28383769 0.46 AT1G75590.1
SAUR-like auxin-responsive protein family
arTal_v1_Chr2_-_16346769_16346769 0.46 AT2G39180.1
CRINKLY4 related 2
arTal_v1_Chr4_+_15221843_15221843 0.45 AT4G31360.1
selenium binding protein
arTal_v1_Chr1_+_28335502_28335502 0.45 AT1G75490.1
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_+_1150886_1150886 0.45 AT5G04190.1
phytochrome kinase substrate 4
arTal_v1_Chr1_+_28241011_28241011 0.45 AT1G75240.1
homeobox protein 33
arTal_v1_Chr4_-_8415605_8415650 0.45 AT4G14680.2
AT4G14680.1
Pseudouridine synthase/archaeosine transglycosylase-like family protein
arTal_v1_Chr2_+_9684562_9684562 0.45 AT2G22770.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_+_2633663_2633663 0.44 AT3G08670.1
serine/arginine repetitive matrix-like protein
arTal_v1_Chr5_-_5662466_5662475 0.44 AT5G17230.2
AT5G17230.4
PHYTOENE SYNTHASE
arTal_v1_Chr5_+_1536057_1536096 0.44 AT5G05180.2
AT5G05180.1
AT5G05180.3
myosin heavy chain, striated protein
arTal_v1_Chr2_-_19361162_19361162 0.44 AT2G47160.2
HCO3- transporter family
arTal_v1_Chr5_-_5662865_5662997 0.44 AT5G17230.3
AT5G17230.1
PHYTOENE SYNTHASE
arTal_v1_Chr2_-_19361328_19361328 0.44 AT2G47160.1
HCO3- transporter family
arTal_v1_Chr3_-_5045520_5045525 0.44 AT3G14980.4
AT3G14980.5
AT3G14980.2
AT3G14980.1
AT3G14980.3
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
arTal_v1_Chr2_-_13185973_13185973 0.43 AT2G30980.1
SHAGGY-related protein kinase dZeta
arTal_v1_Chr4_+_12012408_12012408 0.43 AT4G22910.1
FIZZY-related 2
arTal_v1_Chr1_+_27402814_27402878 0.43 AT1G72820.1
AT1G72820.2
Mitochondrial substrate carrier family protein
arTal_v1_Chr1_-_1637914_1637914 0.42 AT1G05530.1
UDP-glucosyl transferase 75B2
arTal_v1_Chr5_+_1319074_1319074 0.42 AT5G04590.1
sulfite reductase
arTal_v1_Chr1_-_7662725_7662725 0.42 AT1G21830.1
hypothetical protein
arTal_v1_Chr1_+_2105048_2105055 0.42 AT1G06850.1
AT1G06850.2
basic leucine-zipper 52
arTal_v1_Chr3_+_18916014_18916014 0.41 AT3G50890.1
homeobox protein 28
arTal_v1_Chr1_+_16831016_16831016 0.41 AT1G44318.1
Aldolase superfamily protein
arTal_v1_Chr2_-_14644355_14644355 0.41 AT2G34710.1
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
arTal_v1_Chr4_+_7617428_7617428 0.41 AT4G13050.1
Acyl-ACP thioesterase
arTal_v1_Chr2_+_17627894_17627962 0.40 AT2G42320.4
AT2G42320.1
nucleolar protein gar2-like protein
arTal_v1_Chr1_+_10828373_10828373 0.39 AT1G30570.1
hercules receptor kinase 2
arTal_v1_Chr3_+_6904046_6904046 0.39 AT3G19860.3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_-_3620064_3620064 0.39 AT3G11490.1
rac GTPase activating protein
arTal_v1_Chr2_+_17627331_17627467 0.38 AT2G42320.2
AT2G42320.3
nucleolar protein gar2-like protein
arTal_v1_Chr1_-_30310667_30310667 0.37 AT1G80630.1
RNI-like superfamily protein
arTal_v1_Chr3_-_23276630_23276630 0.37 AT3G62980.1
F-box/RNI-like superfamily protein
arTal_v1_Chr4_+_16498391_16498391 0.37 AT4G34530.1
AT4G34540.1
cryptochrome-interacting basic-helix-loop-helix 1
NmrA-like negative transcriptional regulator family protein
arTal_v1_Chr3_+_19393768_19393768 0.36 AT3G52290.1
IQ-domain 3
arTal_v1_Chr5_-_16195751_16195888 0.36 AT5G40450.2
AT5G40450.1
A-kinase anchor-like protein
arTal_v1_Chr2_-_15014147_15014284 0.36 AT2G35710.3
AT2G35710.4
AT2G35710.1
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr1_-_3570838_3570870 0.36 AT1G10740.4
AT1G10740.3
AT1G10740.2
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_-_4915976_4915976 0.36 AT5G15150.1
homeobox 3
arTal_v1_Chr5_-_1706787_1706787 0.35 AT5G05690.2
AT5G05690.3
Cytochrome P450 superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0015840 urea transport(GO:0015840)
0.4 1.3 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.4 3.5 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.3 3.0 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.2 4.6 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.2 1.0 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 1.4 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 1.3 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 0.9 GO:0046713 borate transport(GO:0046713)
0.2 0.7 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.2 0.7 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.2 4.1 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.2 0.5 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 2.4 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.1 0.7 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.1 5.0 GO:0042335 cuticle development(GO:0042335)
0.1 2.0 GO:0009299 mRNA transcription(GO:0009299)
0.1 0.6 GO:0032410 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.5 GO:0080119 ER body organization(GO:0080119)
0.1 1.4 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.1 0.4 GO:0070206 protein trimerization(GO:0070206)
0.1 0.3 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.1 2.1 GO:0009638 phototropism(GO:0009638)
0.1 1.4 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 3.8 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 0.4 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.8 GO:1902025 nitrate import(GO:1902025)
0.1 2.1 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.1 0.8 GO:1990937 xylan acetylation(GO:1990937)
0.1 0.3 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.5 GO:0006751 glutathione catabolic process(GO:0006751)
0.1 0.9 GO:0048766 root hair initiation(GO:0048766)
0.1 0.3 GO:0090342 regulation of cell aging(GO:0090342)
0.1 0.3 GO:0000912 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 0.3 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.5 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 0.9 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 0.7 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.1 1.1 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 0.9 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.1 0.9 GO:0009641 shade avoidance(GO:0009641)
0.1 0.8 GO:0007584 response to nutrient(GO:0007584)
0.0 0.2 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.1 GO:0006666 3-keto-sphinganine metabolic process(GO:0006666)
0.0 0.8 GO:0009750 response to fructose(GO:0009750)
0.0 0.6 GO:0010274 hydrotropism(GO:0010274)
0.0 0.4 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 1.3 GO:0006284 base-excision repair(GO:0006284)
0.0 0.2 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.2 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.0 1.7 GO:0016485 protein processing(GO:0016485)
0.0 1.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 1.2 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.2 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.0 0.9 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 2.2 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.5 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.1 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.9 GO:0070417 cellular response to cold(GO:0070417)
0.0 0.4 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.4 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 1.7 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.2 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.7 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 1.5 GO:0009630 gravitropism(GO:0009630)
0.0 1.1 GO:0010114 response to red light(GO:0010114)
0.0 0.2 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.5 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.1 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.3 GO:0010152 pollen maturation(GO:0010152)
0.0 0.4 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 2.9 GO:0010015 root morphogenesis(GO:0010015)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.7 GO:0051607 defense response to virus(GO:0051607)
0.0 2.4 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.6 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.3 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.4 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.2 GO:0045037 protein import into chloroplast stroma(GO:0045037)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0016328 lateral plasma membrane(GO:0016328)
0.3 3.6 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.2 1.4 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 1.1 GO:0009522 photosystem I(GO:0009522)
0.1 12.8 GO:0009505 plant-type cell wall(GO:0009505)
0.1 8.1 GO:0099503 secretory vesicle(GO:0099503)
0.1 0.5 GO:0010168 ER body(GO:0010168)
0.0 0.6 GO:0009986 cell surface(GO:0009986)
0.0 9.3 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.1 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 1.3 GO:0005875 microtubule associated complex(GO:0005875)
0.0 1.0 GO:0010287 plastoglobule(GO:0010287)
0.0 4.4 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.5 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.4 GO:0010319 stromule(GO:0010319)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0015204 ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204)
0.7 2.0 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.5 1.5 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.4 1.4 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.3 0.8 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.3 1.3 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.2 1.9 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.2 1.0 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.2 3.5 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.2 0.9 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.2 2.2 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.2 0.5 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.1 1.1 GO:0008083 growth factor activity(GO:0008083)
0.1 1.0 GO:0010011 auxin binding(GO:0010011)
0.1 1.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 1.3 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.5 GO:0015928 fucosidase activity(GO:0015928)
0.1 2.9 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.4 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 0.5 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.1 0.5 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.1 0.9 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.2 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.1 0.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.5 GO:0080046 phosphorylase activity(GO:0004645) quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.1 0.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.5 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.2 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.1 0.6 GO:0008199 ferric iron binding(GO:0008199)
0.1 3.7 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 0.6 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.0 0.9 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.1 GO:0047560 3-dehydrosphinganine reductase activity(GO:0047560)
0.0 1.1 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.3 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.4 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 1.3 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 1.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 1.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 1.5 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.2 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.3 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.5 GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water(GO:0016717)
0.0 0.8 GO:0005179 hormone activity(GO:0005179)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.4 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.7 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 2.8 GO:0005507 copper ion binding(GO:0005507)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 1.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.2 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 0.1 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.2 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.9 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.7 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.1 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 4.6 GO:0042802 identical protein binding(GO:0042802)
0.0 5.0 GO:0046983 protein dimerization activity(GO:0046983)
0.0 1.6 GO:0008017 microtubule binding(GO:0008017)
0.0 2.5 GO:0008289 lipid binding(GO:0008289)
0.0 0.0 GO:0008905 mannose-1-phosphate guanylyltransferase activity(GO:0004475) mannose-phosphate guanylyltransferase activity(GO:0008905)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 PID IL12 2PATHWAY IL12-mediated signaling events
0.1 0.3 PID ARF 3PATHWAY Arf1 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.3 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.2 1.1 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.2 0.7 REACTOME TRANS GOLGI NETWORK VESICLE BUDDING Genes involved in trans-Golgi Network Vesicle Budding
0.2 0.5 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.1 0.5 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System