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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G61620
Z-value: 1.03
Transcription factors associated with AT5G61620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61620
|
AT5G61620 | myb-like transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G61620 | arTal_v1_Chr5_+_24772326_24772326 | -0.11 | 5.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 2.72 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 2.28 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.15 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 2.12 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 1.97 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 1.96 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 1.96 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 1.91 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 1.84 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 1.78 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 10.0 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.5 | 8.7 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 8.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 4.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 4.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 3.8 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.3 | 3.6 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.2 | 3.6 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.6 | 3.4 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.3 | 3.1 | GO:0015977 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.2 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.3 | 13.7 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 8.8 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 7.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.4 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 6.1 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 5.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 5.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.5 | 4.3 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 10.6 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 10.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 8.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 4.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.8 | 4.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 4.2 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 3.4 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 3.1 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 3.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 2.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 7.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.6 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 1.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 0.8 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.2 | 0.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.6 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 10.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 2.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 1.2 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 1.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 0.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.4 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |