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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G47370
Z-value: 0.61
Transcription factors associated with AT5G47370
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47370
|
AT5G47370 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HAT2 | arTal_v1_Chr5_-_19218007_19218007 | 0.89 | 2.5e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 2.75 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 2.55 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 2.46 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 2.32 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 2.18 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 2.13 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 2.01 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 2.00 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 1.96 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr4_+_7156150_7156150 Show fit | 1.95 |
AT4G11910.1
|
STAY-GREEN-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47370
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 7.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 7.1 | GO:0010260 | organ senescence(GO:0010260) |
| 0.1 | 6.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.6 | 5.8 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 1.1 | 5.6 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.0 | 5.4 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.1 | 4.8 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
| 0.0 | 4.7 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.2 | 3.7 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 5.8 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 4.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 4.6 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 3.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 3.1 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.1 | 3.1 | GO:0005770 | late endosome(GO:0005770) |
| 0.0 | 2.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 2.6 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 2.5 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 9.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 8.5 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 5.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.6 | 4.5 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 4.4 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.0 | 4.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.7 | 3.7 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.0 | 3.7 | GO:0032561 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.1 | 3.6 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.8 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.4 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.3 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 0.3 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.1 | 0.2 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 0.9 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
| 0.1 | 0.7 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.6 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.6 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.6 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.4 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.1 | 0.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |