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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G39820
Z-value: 0.39
Transcription factors associated with AT5G39820
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G39820
|
AT5G39820 | NAC domain containing protein 94 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC094 | arTal_v1_Chr5_-_15940590_15940590 | -0.49 | 8.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 1.33 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 1.28 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_-_7857933_7857933 Show fit | 1.17 |
AT4G13500.1
|
transmembrane protein |
|
| arTal_v1_Chr4_-_12400231_12400231 Show fit | 1.12 |
AT4G23820.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr2_-_1824480_1824480 Show fit | 0.96 |
AT2G05100.1
AT2G05100.2 |
photosystem II light harvesting complex protein 2.1 |
|
| arTal_v1_Chr1_-_21614169_21614169 Show fit | 0.96 |
AT1G58270.1
|
TRAF-like family protein |
|
| arTal_v1_Chr2_+_6542166_6542166 Show fit | 0.96 |
AT2G15090.1
|
3-ketoacyl-CoA synthase 8 |
|
| arTal_v1_Chr2_+_15059763_15059763 Show fit | 0.93 |
AT2G35860.1
|
FASCICLIN-like arabinogalactan protein 16 precursor |
|
| arTal_v1_Chr5_-_26453199_26453199 Show fit | 0.90 |
AT5G66190.2
AT5G66190.1 |
ferredoxin-NADP[+]-oxidoreductase 1 |
|
| arTal_v1_Chr1_-_1702749_1702749 Show fit | 0.88 |
AT1G05675.1
|
UDP-Glycosyltransferase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G39820
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 2.0 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 1.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 1.4 | GO:0006885 | regulation of pH(GO:0006885) |
| 0.0 | 1.2 | GO:0009959 | negative gravitropism(GO:0009959) |
| 0.1 | 1.1 | GO:0048829 | root cap development(GO:0048829) |
| 0.0 | 1.1 | GO:0006400 | tRNA modification(GO:0006400) |
| 0.0 | 1.1 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.2 | 1.0 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.2 | 1.0 | GO:1903428 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 2.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.1 | 0.7 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
| 0.1 | 0.7 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 0.3 | GO:0009501 | amyloplast(GO:0009501) |
| 0.1 | 0.3 | GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063) |
| 0.0 | 0.3 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.2 | GO:0030139 | endocytic vesicle(GO:0030139) |
| 0.0 | 0.2 | GO:0032300 | mismatch repair complex(GO:0032300) |
| 0.0 | 0.2 | GO:0005880 | nuclear microtubule(GO:0005880) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.0 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.1 | 1.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 1.3 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 1.1 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.3 | 1.0 | GO:1990465 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.0 | 1.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 0.9 | GO:0003959 | NADPH dehydrogenase activity(GO:0003959) ferredoxin-NADP+ reductase activity(GO:0004324) |
| 0.0 | 0.9 | GO:0015925 | galactosidase activity(GO:0015925) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |