GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT5G39760
|
AT5G39760 | homeobox protein 23 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HB23 | arTal_v1_Chr5_+_15911350_15911350 | 0.42 | 2.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_18613239_18613239 Show fit | 10.97 |
AT5G45890.1
|
senescence-associated gene 12 |
|
arTal_v1_Chr3_+_15983199_15983199 Show fit | 8.24 |
AT3G44300.1
|
nitrilase 2 |
|
arTal_v1_Chr1_-_23238644_23238644 Show fit | 7.71 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
arTal_v1_Chr5_-_15825566_15825566 Show fit | 7.54 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
arTal_v1_Chr3_+_22935510_22935510 Show fit | 7.20 |
AT3G61930.1
|
hypothetical protein |
|
arTal_v1_Chr1_+_20387058_20387058 Show fit | 6.76 |
AT1G54575.1
|
hypothetical protein |
|
arTal_v1_Chr4_+_17855637_17855637 Show fit | 6.68 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
arTal_v1_Chr3_-_162905_162905 Show fit | 6.67 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
arTal_v1_Chr3_-_6258426_6258426 Show fit | 6.66 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
arTal_v1_Chr1_+_20386809_20386809 Show fit | 6.60 |
AT1G54575.2
|
hypothetical protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 83.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
0.4 | 45.0 | GO:0007568 | aging(GO:0007568) |
0.2 | 43.1 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
0.9 | 36.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
0.6 | 26.8 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
0.1 | 26.4 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
0.5 | 25.6 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
0.1 | 24.7 | GO:0016311 | dephosphorylation(GO:0016311) |
3.4 | 23.8 | GO:0080187 | floral organ senescence(GO:0080187) |
0.3 | 21.5 | GO:0042594 | response to starvation(GO:0042594) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 257.9 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 25.7 | GO:0005774 | vacuolar membrane(GO:0005774) |
0.6 | 25.3 | GO:0005764 | lysosome(GO:0005764) |
0.3 | 23.5 | GO:0090406 | pollen tube(GO:0090406) |
0.1 | 21.5 | GO:0000325 | plant-type vacuole(GO:0000325) |
0.3 | 17.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.4 | 16.9 | GO:0016592 | mediator complex(GO:0016592) |
0.1 | 15.9 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
0.2 | 15.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 14.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 49.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.2 | 43.4 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
0.4 | 31.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.2 | 29.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.4 | 26.6 | GO:0004364 | glutathione transferase activity(GO:0004364) |
0.2 | 23.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
3.1 | 22.0 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
0.3 | 21.7 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 17.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
1.0 | 15.7 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 4.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
1.1 | 3.4 | PID AURORA A PATHWAY | Aurora A signaling |
0.5 | 2.6 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.3 | 1.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.2 | 1.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.2 | 1.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 1.3 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.4 | 1.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.3 | 1.1 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.2 | 1.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 13.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.8 | 9.9 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
1.3 | 5.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
1.7 | 5.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.9 | 2.8 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.6 | 2.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.9 | 2.6 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
0.5 | 2.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.5 | 2.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.3 | 1.7 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |