GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT5G25190
|
AT5G25190 | Integrase-type DNA-binding superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ESE3 | arTal_v1_Chr5_-_8707885_8707885 | 0.63 | 3.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_-_18098633_18098633 Show fit | 8.91 |
AT4G38770.1
|
proline-rich protein 4 |
|
arTal_v1_Chr2_+_14524607_14524607 Show fit | 8.47 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
arTal_v1_Chr4_+_13391293_13391344 Show fit | 7.22 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
arTal_v1_Chr3_+_5505360_5505360 Show fit | 7.19 |
AT3G16240.1
|
delta tonoplast integral protein |
|
arTal_v1_Chr4_+_13390754_13390754 Show fit | 6.70 |
AT4G26530.3
|
Aldolase superfamily protein |
|
arTal_v1_Chr2_-_18744322_18744322 Show fit | 6.65 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
arTal_v1_Chr1_+_3157501_3157501 Show fit | 6.53 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
arTal_v1_Chr1_+_27338034_27338062 Show fit | 6.32 |
AT1G72600.2
AT1G72600.1 |
hydroxyproline-rich glycoprotein family protein |
|
arTal_v1_Chr5_+_8863224_8863224 Show fit | 6.13 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
arTal_v1_Chr3_-_19139423_19139423 Show fit | 6.06 |
AT3G51600.1
|
lipid transfer protein 5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 37.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
1.5 | 27.7 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
1.1 | 20.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
1.0 | 18.5 | GO:0006949 | syncytium formation(GO:0006949) |
0.4 | 18.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
0.6 | 17.3 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
0.5 | 14.2 | GO:0009913 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
0.1 | 13.5 | GO:0080167 | response to karrikin(GO:0080167) |
0.5 | 13.0 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
0.2 | 12.8 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 107.9 | GO:0005576 | extracellular region(GO:0005576) |
0.3 | 91.5 | GO:0009579 | thylakoid(GO:0009579) |
0.3 | 58.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.2 | 54.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
0.8 | 52.7 | GO:0010287 | plastoglobule(GO:0010287) |
0.3 | 50.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.1 | 41.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
0.9 | 23.1 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
1.8 | 14.4 | GO:0009538 | photosystem I reaction center(GO:0009538) |
1.8 | 12.4 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 28.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
0.9 | 25.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
1.7 | 24.1 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
0.2 | 20.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 17.9 | GO:0042802 | identical protein binding(GO:0042802) |
0.2 | 17.1 | GO:0009055 | electron carrier activity(GO:0009055) |
0.5 | 15.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
0.2 | 15.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
0.5 | 13.2 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
0.5 | 12.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.4 | 2.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.6 | 2.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.2 | 2.0 | PID E2F PATHWAY | E2F transcription factor network |
0.4 | 1.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.2 | 1.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 1.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
0.3 | 0.9 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 9.0 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
1.1 | 3.2 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.6 | 3.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.8 | 2.3 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
0.3 | 1.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.2 | 1.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.2 | 1.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
0.4 | 1.3 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
0.2 | 1.3 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
0.2 | 1.3 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |