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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G11260
Z-value: 3.33
Transcription factors associated with AT5G11260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G11260
|
AT5G11260 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HY5 | arTal_v1_Chr5_-_3595003_3595073 | 0.77 | 1.6e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 18.32 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 17.46 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr1_+_5290747_5290747 Show fit | 16.31 |
AT1G15380.2
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_+_5290582_5290582 Show fit | 16.01 |
AT1G15380.1
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr5_-_216773_216773 Show fit | 15.51 |
AT5G01550.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr3_-_16923299_16923299 Show fit | 14.17 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
| arTal_v1_Chr4_-_12006209_12006209 Show fit | 13.65 |
AT4G22880.2
AT4G22880.1 AT4G22880.3 |
leucoanthocyanidin dioxygenase |
|
| arTal_v1_Chr2_-_14146471_14146555 Show fit | 13.54 |
AT2G33380.2
AT2G33380.1 |
Caleosin-related family protein |
|
| arTal_v1_Chr5_-_26096114_26096114 Show fit | 11.39 |
AT5G65300.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 10.96 |
AT2G43570.1
|
chitinase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G11260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 112.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 1.1 | 51.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.8 | 27.3 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.2 | 21.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 20.7 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.3 | 19.8 | GO:0051607 | defense response to virus(GO:0051607) |
| 5.4 | 16.1 | GO:0010446 | response to alkaline pH(GO:0010446) |
| 0.1 | 14.9 | GO:0009845 | seed germination(GO:0009845) |
| 1.5 | 13.7 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
| 3.4 | 13.5 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 246.4 | GO:0005634 | nucleus(GO:0005634) |
| 2.7 | 19.1 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 18.8 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.5 | 12.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 9.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 9.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 6.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.5 | 5.6 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 4.5 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 75.2 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.2 | 54.6 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.4 | 17.5 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.1 | 17.5 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
| 0.1 | 16.9 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.0 | 14.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 1.9 | 13.5 | GO:1990137 | plant seed peroxidase activity(GO:1990137) |
| 0.7 | 12.2 | GO:0004022 | alcohol dehydrogenase (NAD) activity(GO:0004022) |
| 0.5 | 11.3 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.2 | 10.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.5 | 2.6 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |