Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G08520
Z-value: 1.06
Transcription factors associated with AT5G08520
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08520
|
AT5G08520 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G08520 | arTal_v1_Chr5_-_2758540_2758540 | 0.01 | 9.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_17907638_17907638 Show fit | 3.89 |
AT5G44420.1
|
plant defensin 1.2 |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 3.05 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 2.76 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 2.73 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr1_+_6927736_6927736 Show fit | 2.53 |
AT1G19960.1
|
transcription factor |
|
| arTal_v1_Chr1_-_10473502_10473502 Show fit | 2.48 |
AT1G29910.1
|
chlorophyll A/B binding protein 3 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 2.31 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 2.27 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 2.26 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 2.25 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08520
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 24.4 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.6 | 15.3 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.0 | 11.0 | GO:0006412 | translation(GO:0006412) |
| 0.7 | 10.7 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.5 | 8.7 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 7.1 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.3 | 5.5 | GO:0010600 | regulation of auxin biosynthetic process(GO:0010600) |
| 0.1 | 4.3 | GO:0019761 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.0 | 4.3 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.2 | 4.2 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 38.4 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.3 | 14.2 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 11.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 9.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 9.3 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 1.0 | 9.1 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 8.4 | GO:0009579 | thylakoid(GO:0009579) |
| 0.3 | 8.1 | GO:0009523 | photosystem II(GO:0009523) |
| 0.0 | 7.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 7.0 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 15.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 10.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 1.7 | 9.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 8.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.6 | 8.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 6.7 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 6.0 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.0 | 3.9 | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen(GO:0016705) |
| 1.3 | 3.8 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.0 | 3.8 | GO:0008168 | methyltransferase activity(GO:0008168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 7.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 1.0 | PID E2F PATHWAY | E2F transcription factor network |
| 0.3 | 0.8 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.1 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 10.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 2.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.4 | 1.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 1.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 0.6 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.4 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |