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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G06100
Z-value: 1.24
Transcription factors associated with AT5G06100
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06100
|
AT5G06100 | myb domain protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB33 | arTal_v1_Chr5_+_1837835_1837914 | -0.41 | 2.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 2.96 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 2.79 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 2.59 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr4_+_14215473_14215473 Show fit | 2.40 |
AT4G28780.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_18528267_18528267 Show fit | 2.36 |
AT5G45670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 2.27 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_10391298_10391298 Show fit | 2.21 |
AT4G18970.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_10390991_10390991 Show fit | 2.20 |
AT4G18970.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_1136397_1136397 Show fit | 2.20 |
AT3G04290.1
|
Li-tolerant lipase 1 |
|
| arTal_v1_Chr1_-_1940463_1940496 Show fit | 2.16 |
AT1G06360.1
AT1G06360.2 |
Fatty acid desaturase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06100
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.7 | 12.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 12.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.2 | 12.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 10.4 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 9.4 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.3 | 8.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.1 | 6.4 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.3 | 6.2 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 6.2 | GO:0007267 | cell-cell signaling(GO:0007267) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 92.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 56.2 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 32.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 19.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 18.0 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 17.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 16.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.3 | 15.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 14.3 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 11.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.2 | 13.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 12.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 10.0 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 8.6 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.3 | 8.2 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 8.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 8.0 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.1 | 7.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 7.7 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.5 | 2.0 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.2 | 1.9 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 1.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.7 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.6 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 0.5 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 2.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.2 | 1.9 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.3 | 1.7 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 1.0 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 1.0 | REACTOME POST TRANSLATIONAL PROTEIN MODIFICATION | Genes involved in Post-translational protein modification |
| 0.1 | 0.8 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
| 0.2 | 0.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 0.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.2 | 0.5 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |