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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G18770
Z-value: 1.04
Transcription factors associated with AT4G18770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18770
|
AT4G18770 | myb domain protein 98 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB98 | arTal_v1_Chr4_+_10311030_10311030 | 0.62 | 4.3e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 6.47 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 5.95 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 4.78 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 4.63 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 4.62 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 4.54 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 4.52 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 4.49 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr2_+_13581534_13581534 Show fit | 4.36 |
AT2G31945.1
|
transmembrane protein |
|
| arTal_v1_Chr2_+_7606728_7606905 Show fit | 4.34 |
AT2G17500.2
AT2G17500.1 AT2G17500.3 AT2G17500.4 |
Auxin efflux carrier family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.3 | 15.7 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 11.7 | GO:0006885 | regulation of pH(GO:0006885) |
| 0.2 | 10.2 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
| 0.6 | 9.7 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.3 | 9.7 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 2.8 | 8.3 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.4 | 7.8 | GO:0015770 | sucrose transport(GO:0015770) |
| 0.2 | 7.8 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 1.9 | 7.6 | GO:0016139 | glycoside catabolic process(GO:0016139) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 21.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 10.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 9.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.5 | 7.1 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.4 | 6.7 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.1 | 4.9 | GO:0005770 | late endosome(GO:0005770) |
| 0.3 | 4.4 | GO:0000786 | nucleosome(GO:0000786) |
| 0.6 | 4.2 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.2 | 4.0 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.1 | 4.0 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 12.6 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 12.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 12.1 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.1 | 10.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 1.1 | 10.2 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.0 | 9.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 1.9 | 7.6 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.2 | 7.0 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 6.9 | GO:0003779 | actin binding(GO:0003779) |
| 0.6 | 6.8 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.8 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 1.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 1.1 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.3 | 1.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 0.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.2 | 0.8 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.2 | 0.6 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.4 | 0.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.1 | 3.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 1.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 0.9 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.9 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 0.9 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.2 | 0.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 0.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.6 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |