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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G18170
Z-value: 3.19
Transcription factors associated with AT4G18170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18170
|
AT4G18170 | WRKY DNA-binding protein 28 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY28 | arTal_v1_Chr4_+_10061214_10061214 | 0.91 | 3.7e-11 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 15.44 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 13.12 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 12.11 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 11.95 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 11.76 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 11.45 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 11.34 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 11.29 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 11.14 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 11.14 |
AT3G01420.1
|
Peroxidase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 105.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 54.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 3.4 | 54.5 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.5 | 41.1 | GO:0010260 | organ senescence(GO:0010260) |
| 0.9 | 39.1 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.8 | 33.9 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.3 | 32.8 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.8 | 32.7 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.7 | 32.5 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.8 | 31.8 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 440.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 28.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.4 | 24.7 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 22.9 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 21.3 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.6 | 20.1 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.3 | 19.7 | GO:0005635 | nuclear envelope(GO:0005635) |
| 1.0 | 19.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 19.5 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.5 | 19.2 | GO:0009504 | cell plate(GO:0009504) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 124.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.3 | 104.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 79.3 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.3 | 44.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.6 | 37.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.6 | 31.8 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 0.2 | 30.5 | GO:0003779 | actin binding(GO:0003779) |
| 2.0 | 29.9 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 1.3 | 29.9 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.5 | 29.2 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 8.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 1.6 | 8.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 1.0 | 6.7 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 1.0 | 5.9 | PID PLK1 PATHWAY | PLK1 signaling events |
| 1.6 | 4.8 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.8 | 4.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.8 | 4.0 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.4 | 2.5 | PID P73PATHWAY | p73 transcription factor network |
| 0.8 | 2.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.4 | 2.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 20.5 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 2.4 | 14.3 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.4 | 13.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.4 | 11.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 1.1 | 6.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 1.3 | 5.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 1.0 | 4.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.6 | 4.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.6 | 4.0 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.6 | 3.8 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |