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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G24050
Z-value: 1.39
Transcription factors associated with AT3G24050
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24050
|
AT3G24050 | GATA transcription factor 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA1 | arTal_v1_Chr3_+_8685739_8685739 | -0.67 | 1.1e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 6.05 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 5.54 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr5_+_26767599_26767599 Show fit | 4.99 |
AT5G67070.1
|
ralf-like 34 |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 4.42 |
AT3G63200.1
|
PATATIN-like protein 9 |
|
| arTal_v1_Chr5_-_4171954_4171954 Show fit | 4.34 |
AT5G13140.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_-_753657_753657 Show fit | 3.43 |
AT5G03170.1
|
FASCICLIN-like arabinogalactan-protein 11 |
|
| arTal_v1_Chr3_+_8586359_8586359 Show fit | 3.39 |
AT3G23805.1
|
ralf-like 24 |
|
| arTal_v1_Chr1_-_28603932_28603932 Show fit | 3.37 |
AT1G76240.1
|
DUF241 domain protein (DUF241) |
|
| arTal_v1_Chr3_+_3698658_3698658 Show fit | 3.34 |
AT3G11700.1
|
FASCICLIN-like arabinogalactan protein 18 precursor |
|
| arTal_v1_Chr2_+_19145218_19145218 Show fit | 3.27 |
AT2G46630.1
|
serine/arginine repetitive matrix protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24050
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 12.3 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.2 | 7.4 | GO:0080022 | primary root development(GO:0080022) |
| 0.1 | 4.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.4 | 3.4 | GO:0009643 | photosynthetic acclimation(GO:0009643) |
| 0.6 | 3.3 | GO:0031116 | positive regulation of microtubule polymerization(GO:0031116) |
| 1.0 | 2.9 | GO:0090058 | metaxylem development(GO:0090058) |
| 0.2 | 2.9 | GO:0015977 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
| 0.6 | 2.8 | GO:0010080 | regulation of floral meristem growth(GO:0010080) inflorescence meristem growth(GO:0010450) |
| 0.2 | 2.8 | GO:0048496 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 10.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.9 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 5.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 4.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 3.3 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.1 | 3.3 | GO:0009574 | preprophase band(GO:0009574) |
| 0.1 | 2.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 2.8 | GO:0005811 | lipid particle(GO:0005811) |
| 0.2 | 2.5 | GO:0045298 | tubulin complex(GO:0045298) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 12.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 9.5 | GO:0005179 | hormone activity(GO:0005179) |
| 0.2 | 5.8 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.0 | 5.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 5.4 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.0 | 3.1 | GO:0042803 | protein homodimerization activity(GO:0042803) |
| 0.3 | 2.6 | GO:0043495 | protein anchor(GO:0043495) |
| 0.1 | 2.6 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 2.6 | GO:0001012 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.5 | 2.5 | GO:0034432 | bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |