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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G15170
Z-value: 0.50
Transcription factors associated with AT3G15170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15170
|
AT3G15170 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CUC1 | arTal_v1_Chr3_+_5109782_5109782 | 0.01 | 9.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.10 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 1.95 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 1.94 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 1.80 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr4_+_14215473_14215473 Show fit | 1.77 |
AT4G28780.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 1.75 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr1_-_25049424_25049424 Show fit | 1.69 |
AT1G67090.2
|
ribulose bisphosphate carboxylase small chain 1A |
|
| arTal_v1_Chr1_-_25049667_25049667 Show fit | 1.69 |
AT1G67090.1
|
ribulose bisphosphate carboxylase small chain 1A |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 1.68 |
AT5G14740.9
|
carbonic anhydrase 2 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 1.58 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.6 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.0 | 4.3 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 4.2 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.2 | 3.4 | GO:0045493 | xylan catabolic process(GO:0045493) |
| 0.2 | 3.2 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.4 | 3.0 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 0.1 | 3.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 2.4 | GO:0010088 | phloem development(GO:0010088) |
| 0.1 | 2.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 2.2 | GO:0010206 | photosystem II repair(GO:0010206) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 6.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 6.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 6.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 3.8 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 3.1 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 2.1 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 2.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 1.9 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 1.9 | GO:0009531 | secondary cell wall(GO:0009531) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | GO:0008168 | methyltransferase activity(GO:0008168) |
| 1.3 | 3.8 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.0 | 3.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 3.7 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.6 | 3.4 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 3.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 3.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 2.8 | GO:0031176 | endo-1,4-beta-xylanase activity(GO:0031176) |
| 0.0 | 2.8 | GO:0043621 | protein self-association(GO:0043621) |
| 0.8 | 2.5 | GO:0016630 | protochlorophyllide reductase activity(GO:0016630) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.0 | 0.2 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.1 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 0.8 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.8 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.1 | 0.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.2 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.2 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.0 | 0.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |