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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G03200
Z-value: 0.97
Transcription factors associated with AT3G03200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G03200
|
AT3G03200 | NAC domain containing protein 45 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC045 | arTal_v1_Chr3_-_738629_738629 | 0.18 | 3.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 4.39 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 4.29 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 4.28 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 4.27 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 3.85 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.78 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 3.55 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 3.51 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 3.47 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr1_-_4394343_4394454 Show fit | 3.38 |
AT1G12900.3
AT1G12900.4 AT1G12900.1 AT1G12900.2 AT1G12900.5 |
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G03200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 43.8 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 27.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.2 | 16.5 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.7 | 16.1 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.7 | 14.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 13.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 11.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.2 | 10.5 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.4 | 10.5 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 10.3 | GO:0009657 | plastid organization(GO:0009657) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 81.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 27.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 21.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 18.6 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 18.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 17.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.6 | 15.4 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 14.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 14.3 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 1.0 | 9.3 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 18.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 2.4 | 14.6 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.6 | 13.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 13.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 11.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 10.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.3 | 9.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.4 | 8.9 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.9 | 8.0 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.4 | 8.0 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.4 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 1.3 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.4 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 4.9 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.4 | 1.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 1.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.5 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
| 0.3 | 1.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.3 | 1.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 1.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.2 | 1.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 0.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |