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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G35700
Z-value: 0.55
Transcription factors associated with AT2G35700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G35700
|
AT2G35700 | ERF family protein 38 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF38 | arTal_v1_Chr2_+_15005064_15005064 | 0.48 | 8.9e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.44 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 2.83 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 2.78 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 2.66 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 2.51 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 2.26 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_-_216773_216773 Show fit | 2.14 |
AT5G01550.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 2.13 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr5_+_3239617_3239617 Show fit | 2.10 |
AT5G10300.2
|
methyl esterase 5 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 2.08 |
AT3G08860.1
|
PYRIMIDINE 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G35700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 8.7 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 6.8 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.0 | 6.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 6.4 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 4.7 | GO:0010228 | vegetative to reproductive phase transition of meristem(GO:0010228) |
| 1.0 | 4.2 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 0.0 | 4.1 | GO:0006366 | transcription from RNA polymerase II promoter(GO:0006366) |
| 0.5 | 3.8 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.9 | 3.6 | GO:1900378 | positive regulation of secondary metabolite biosynthetic process(GO:1900378) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.4 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 5.6 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 5.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 4.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.3 | 3.9 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 2.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 2.8 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.0 | 2.7 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 2.6 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 2.4 | GO:0031970 | organelle envelope lumen(GO:0031970) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 9.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 8.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 7.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 4.7 | GO:0032182 | ubiquitin-like protein binding(GO:0032182) ubiquitin binding(GO:0043130) |
| 0.1 | 4.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 1.0 | 4.2 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.4 | 4.0 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.8 | 3.8 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.0 | 3.7 | GO:0003682 | chromatin binding(GO:0003682) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 0.9 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.3 | 0.3 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.3 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 0.9 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.2 | 0.9 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.7 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.1 | 0.5 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.1 | 0.4 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.1 | 0.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |