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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G18160
Z-value: 0.67
Transcription factors associated with AT2G18160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18160
|
AT2G18160 | basic leucine-zipper 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP2 | arTal_v1_Chr2_-_7899242_7899242 | -0.24 | 2.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 1.96 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 1.88 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.51 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.43 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr1_+_6612630_6612630 Show fit | 1.42 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 1.40 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 1.36 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 1.33 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 1.21 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 1.20 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 7.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.0 | 6.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.8 | 4.9 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.2 | 3.3 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.0 | 3.1 | GO:0009630 | gravitropism(GO:0009630) |
| 0.0 | 2.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 2.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.9 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 1.7 | GO:0009827 | plant-type cell wall modification(GO:0009827) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.5 | GO:0034357 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
| 0.1 | 9.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 6.3 | GO:0009522 | photosystem I(GO:0009522) |
| 0.2 | 4.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 4.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 3.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 3.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.4 | GO:0009579 | thylakoid(GO:0009579) |
| 0.6 | 1.9 | GO:0030093 | chloroplast photosystem I(GO:0030093) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 10.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 4.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 1.9 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.3 | 1.8 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 1.8 | GO:0030060 | L-malate dehydrogenase activity(GO:0030060) |
| 0.4 | 1.7 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.2 | 1.6 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.1 | 1.6 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
| 0.1 | 1.5 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
| 0.0 | 0.1 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |