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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G01940
Z-value: 1.13
Transcription factors associated with AT2G01940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G01940
|
AT2G01940 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SGR5 | arTal_v1_Chr2_+_432195_432275 | -0.69 | 5.2e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 2.98 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 2.85 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.69 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 2.60 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_-_22317070_22317070 Show fit | 2.24 |
AT1G60590.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 2.15 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 2.11 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr1_-_6999839_6999839 Show fit | 2.10 |
AT1G20190.1
|
expansin 11 |
|
| arTal_v1_Chr4_+_9556783_9556783 Show fit | 2.01 |
AT4G16980.1
|
arabinogalactan-protein family |
|
| arTal_v1_Chr5_+_17712203_17712203 Show fit | 2.00 |
AT5G44020.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G01940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 4.9 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 4.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.3 | 4.4 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.5 | 4.3 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 4.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.4 | 3.6 | GO:0006168 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
| 0.0 | 3.4 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.6 | 3.2 | GO:0010450 | inflorescence meristem growth(GO:0010450) |
| 0.4 | 2.7 | GO:1904276 | regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 29.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 12.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 2.5 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.2 | 2.4 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.2 | 1.7 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 1.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.3 | 1.0 | GO:0035371 | microtubule plus-end(GO:0035371) |
| 0.1 | 1.0 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 1.0 | GO:0031977 | thylakoid lumen(GO:0031977) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 5.5 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.2 | 5.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 4.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 4.1 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.5 | 3.6 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.1 | 3.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 3.2 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 2.8 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
| 0.1 | 2.5 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 2.5 | GO:0003993 | acid phosphatase activity(GO:0003993) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.4 | 1.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.7 | REACTOME DNA REPAIR | Genes involved in DNA Repair |
| 0.2 | 0.6 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.2 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.5 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.3 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |