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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G76890
Z-value: 1.14
Transcription factors associated with AT1G76890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76890
|
AT1G76890 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GT2 | arTal_v1_Chr1_-_28875435_28875435 | -0.52 | 5.0e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 4.93 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 4.30 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 3.70 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 3.66 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 3.61 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.31 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 3.15 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 3.07 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.01 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 2.93 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 16.0 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.8 | 14.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 12.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 8.8 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 8.2 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 7.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 7.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 7.4 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.4 | 7.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.2 | 6.9 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 116.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 54.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 20.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 19.3 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 18.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 12.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 12.7 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 10.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 5.4 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.1 | 5.2 | GO:0005874 | microtubule(GO:0005874) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 17.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 14.5 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.5 | 13.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 13.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 8.3 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.2 | 7.8 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 1.2 | 7.0 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.3 | 6.7 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 6.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 6.5 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 1.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.6 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.4 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.2 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.6 | 2.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.4 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.2 | 1.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 1.0 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.2 | 0.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 0.6 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.2 | 0.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |