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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G76890

Z-value: 1.14

Transcription factors associated with AT1G76890

Gene Symbol Gene ID Gene Info
AT1G76890
AT1G76890 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GT2arTal_v1_Chr1_-_28875435_28875435-0.525.0e-03Click!

Activity profile of AT1G76890 motif

Sorted Z-values of AT1G76890 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_4312103 4.93 AT2G10940.2
AT2G10940.1
AT2G10940
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_9072708 4.30 AT5G25980.2
AT5G25980.1
AT5G25980.3
TGG2
glucoside glucohydrolase 2
Chr2_-_16950705 3.70 AT2G40610.1
EXPA8
expansin A8
Chr2_+_14524607 3.66 AT2G34430.1
LHB1B1
light-harvesting chlorophyll-protein complex II subunit B1
Chr5_-_19648362 3.61 AT5G48490.1
AT5G48490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_29635931 3.31 AT1G78820.1
AT1G78820
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr2_+_9844134 3.15 AT2G23130.1
AT2G23130.2
AGP17
arabinogalactan protein 17
Chr1_-_24606722 3.07 AT1G66100.1
AT1G66100
Plant thionin
Chr3_-_21523375 3.01 AT3G58120.2
AT3G58120.1
BZIP61
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_-_17777445 2.93 AT4G37800.1
XTH7
xyloglucan endotransglucosylase/hydrolase 7
Chr4_-_10391298 2.82 AT4G18970.1
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10390991 2.80 AT4G18970.2
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_18744322 2.78 AT2G45470.1
FLA8
FASCICLIN-like arabinogalactan protein 8
Chr5_-_15382071 2.76 AT5G38420.1
RBCS2B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr3_+_1695156 2.75 AT3G05730.1
AT3G05730
defensin-like protein
Chr3_-_4008018 2.74 AT3G12610.1
DRT100
Leucine-rich repeat (LRR) family protein
Chr1_+_10371675 2.72 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_+_5681380 2.72 AT3G16670.1
AT3G16670
Pollen Ole e 1 allergen and extensin family protein
Chr2_+_14577083 2.71 AT2G34620.1
AT2G34620
Mitochondrial transcription termination factor family protein
Chr5_+_26298728 2.67 AT5G65730.1
XTH6
xyloglucan endotransglucosylase/hydrolase 6
Chr1_-_4090857 2.66 AT1G12090.1
ELP
extensin-like protein
Chr2_+_2763449 2.65 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr5_-_6222300 2.63 AT5G18660.1
PCB2
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_17760865 2.62 AT5G44130.1
FLA13
FASCICLIN-like arabinogalactan protein 13 precursor
Chr3_-_5508414 2.58 AT3G16250.1
PnsB3
NDH-dependent cyclic electron flow 1
Chr2_+_8940833 2.56 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr5_+_4757856 2.55 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr5_-_6976036 2.44 AT5G20630.1
GER3
germin 3
Chr3_+_3857780 2.42 AT3G12110.1
ACT11
actin-11
Chr5_+_18634041 2.37 AT5G45950.1
AT5G45950
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_4758921 2.36 AT5G14740.9
CA2
carbonic anhydrase 2
Chr3_-_8589754 2.36 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_+_23345754 2.29 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr1_+_20614573 2.29 AT1G55260.1
AT1G55260.2
AT1G55260
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_16448844 2.27 AT3G44990.1
XTH31
xyloglucan endo-transglycosylase-related 8
Chr1_-_10475969 2.25 AT1G29920.1
CAB2
chlorophyll A/B-binding protein 2
Chr4_-_17606924 2.25 AT4G37450.1
AT4G37450.2
AGP18
arabinogalactan protein 18
Chr1_+_27338034 2.25 AT1G72600.2
AT1G72600.1
AT1G72600
hydroxyproline-rich glycoprotein family protein
Chr2_-_12433796 2.22 AT2G28950.1
EXPA6
expansin A6
Chr3_+_251868 2.17 AT3G01680.1
SEOR1
sieve element occlusion amino-terminus protein
Chr2_-_15789605 2.17 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr2_-_15790139 2.16 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_+_152446 2.15 AT5G01370.1
ACI1
ALC-interacting protein 1
Chr1_+_17918207 2.12 AT1G48480.1
RKL1
receptor-like kinase 1
Chr5_+_7502427 2.12 AT5G22580.1
AT5G22580
Stress responsive A/B Barrel Domain-containing protein
Chr1_-_25049424 2.10 AT1G67090.2
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr1_-_25049667 2.10 AT1G67090.1
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr4_-_5779462 2.10 AT4G09010.1
AT4G09010.2
AT4G09010.3
TL29
ascorbate peroxidase 4
Chr3_-_15617149 2.09 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_1676999 2.08 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr1_-_3880391 2.08 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr5_-_18026077 2.08 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr3_-_15617309 2.06 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_620691 2.06 AT4G01460.1
AT4G01460.2
AT4G01460
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_4001113 2.06 AT1G11860.3
AT1G11860.1
AT1G11860.2
AT1G11860
Glycine cleavage T-protein family
Chr2_+_1676717 2.02 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr5_-_2185972 2.02 AT5G07030.1
AT5G07030
Eukaryotic aspartyl protease family protein
Chr1_-_10473502 1.99 AT1G29910.1
CAB3
chlorophyll A/B binding protein 3
Chr5_-_7026533 1.99 AT5G20740.1
AT5G20740
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_+_22973564 1.99 AT3G62030.3
AT3G62030.1
ROC4
rotamase CYP 4
Chr3_+_18262290 1.99 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr3_-_19595834 1.98 AT3G52870.1
AT3G52870
IQ calmodulin-binding motif family protein
Chr2_-_1800472 1.96 AT2G05070.1
LHCB2.2
photosystem II light harvesting complex protein 2.2
Chr4_-_12772438 1.95 AT4G24780.1
AT4G24780.2
AT4G24780
Pectin lyase-like superfamily protein
Chr3_+_22973004 1.94 AT3G62030.2
ROC4
rotamase CYP 4
Chr5_-_1293723 1.94 AT5G04530.1
KCS19
3-ketoacyl-CoA synthase 19
Chr3_-_6882235 1.93 AT3G19820.3
AT3G19820.1
AT3G19820.2
DWF1
cell elongation protein / DWARF1 / DIMINUTO (DIM)
Chr1_+_907523 1.93 AT1G03630.1
AT1G03630.2
POR C
protochlorophyllide oxidoreductase C
Chr5_+_4944816 1.93 AT5G15230.1
GASA4
GAST1 protein homolog 4
Chr4_-_16583075 1.92 AT4G34760.1
AT4G34760
SAUR-like auxin-responsive protein family
Chr5_-_7026753 1.92 AT5G20740.2
AT5G20740
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_-_11727654 1.92 AT2G27420.1
AT2G27420
Cysteine proteinases superfamily protein
Chr4_-_8307934 1.90 AT4G14440.1
HCD1
3-hydroxyacyl-CoA dehydratase 1
Chr5_-_671687 1.88 AT5G02890.1
AT5G02890
HXXXD-type acyl-transferase family protein
Chr2_+_9636346 1.87 AT2G22670.1
AT2G22670.4
AT2G22670.2
AT2G22670.5
AT2G22670.3
IAA8
indoleacetic acid-induced protein 8
Chr5_-_8707885 1.87 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr3_+_19845097 1.86 AT3G53530.2
AT3G53530.1
NAKR3
Chloroplast-targeted copper chaperone protein
Chr5_+_16468327 1.85 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr1_-_26468703 1.85 AT1G70280.1
AT1G70280.2
AT1G70280
NHL domain-containing protein
Chr5_+_5078200 1.84 AT5G15600.1
AT5G15600.2
SP1L4
SPIRAL1-like4
Chr3_+_5314817 1.82 AT3G15680.1
AT3G15680.2
AT3G15680
Ran BP2/NZF zinc finger-like superfamily protein
Chr5_+_5237970 1.82 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr3_-_7187521 1.82 AT3G20570.1
ENODL9
early nodulin-like protein 9
Chr5_+_18528267 1.82 AT5G45670.1
AT5G45670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_7857933 1.80 AT4G13500.1
AT4G13500
transmembrane protein
Chr1_+_27452748 1.80 AT1G72970.1
AT1G72970.2
HTH
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr2_+_14733975 1.79 AT2G34925.1
CLE42
CLAVATA3/ESR-RELATED 42
Chr4_-_12768239 1.79 AT4G24770.1
RBP31
31-kDa RNA binding protein
Chr5_-_24990331 1.79 AT5G62220.1
GT18
glycosyltransferase 18
Chr5_+_4945062 1.79 AT5G15230.2
GASA4
GAST1 protein homolog 4
Chr4_-_12769419 1.78 AT4G24770.2
RBP31
31-kDa RNA binding protein
Chr1_+_10149791 1.78 AT1G29070.1
AT1G29070
Ribosomal protein L34
Chr4_-_7353117 1.77 AT4G12420.1
AT4G12420.2
SKU5
Cupredoxin superfamily protein
Chr3_-_20903080 1.76 AT3G56370.1
AT3G56370
Leucine-rich repeat protein kinase family protein
Chr3_-_373805 1.76 AT3G02110.1
scpl25
serine carboxypeptidase-like 25
Chr1_-_15607966 1.76 AT1G41830.1
SKS6
SKU5-similar 6
Chr4_-_69884 1.74 AT4G00165.2
AT4G00165.1
AT4G00165
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_19191247 1.74 AT2G46710.1
ROPGAP3
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr2_+_15335284 1.73 AT2G36570.1
AT2G36570
Leucine-rich repeat protein kinase family protein
Chr5_+_2680401 1.72 AT5G08330.1
TCP11
TCP family transcription factor
Chr5_+_18945543 1.72 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr3_+_17949416 1.72 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_11548016 1.72 AT1G32100.1
PRR1
pinoresinol reductase 1
Chr1_+_5058583 1.71 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
Chr1_+_28428671 1.71 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr1_+_12026936 1.71 AT1G33170.1
AT1G33170
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_20712386 1.71 AT5G50915.4
AT5G50915.2
AT5G50915.1
AT5G50915.3
AT5G50915
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_9251659 1.71 AT1G26761.1
AT1G26761
Arabinanase/levansucrase/invertase
Chr5_-_23308680 1.70 AT5G57560.1
TCH4
Xyloglucan endotransglucosylase/hydrolase family protein
Chr4_+_16022269 1.70 AT4G33220.1
AT4G33220.2
PME44
pectin methylesterase 44
Chr5_-_17581275 1.69 AT5G43750.1
PnsB5
NAD(P)H dehydrogenase 18
Chr5_+_5238502 1.69 AT5G16030.5
AT5G16030
mental retardation GTPase activating protein
Chr3_-_19467455 1.68 AT3G52500.1
AT3G52500
Eukaryotic aspartyl protease family protein
Chr1_-_26515188 1.68 AT1G70370.2
AT1G70370.1
PG2
polygalacturonase 2
Chr1_+_23911024 1.68 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr3_-_2216483 1.68 AT3G07010.1
AT3G07010.2
AT3G07010
Pectin lyase-like superfamily protein
Chr4_+_17243583 1.67 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr5_+_16768935 1.66 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr3_-_6436046 1.66 AT3G18710.1
PUB29
plant U-box 29
Chr3_+_10017321 1.65 AT3G27160.1
AT3G27160.2
GHS1
Ribosomal protein S21 family protein
Chr4_-_17181261 1.64 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr1_+_22444307 1.64 AT1G60950.1
FED A
2Fe-2S ferredoxin-like superfamily protein
Chr5_+_20945676 1.64 AT5G51560.1
AT5G51560
Leucine-rich repeat protein kinase family protein
Chr4_-_17181466 1.64 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr3_+_2564153 1.64 AT3G08030.2
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr5_+_18627950 1.62 AT5G45930.1
CHLI2
magnesium chelatase i2
Chr1_-_227302 1.62 AT1G01620.2
PIP1C
plasma membrane intrinsic protein 1C
Chr1_-_227543 1.62 AT1G01620.1
PIP1C
plasma membrane intrinsic protein 1C
Chr3_+_2563803 1.62 AT3G08030.1
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr1_-_22317070 1.60 AT1G60590.1
AT1G60590
Pectin lyase-like superfamily protein
Chr4_+_6408007 1.59 AT4G10340.1
LHCB5
light harvesting complex of photosystem II 5
Chr3_-_22972239 1.59 AT3G62020.2
AT3G62020.1
GLP10
germin-like protein 10
Chr4_-_7587099 1.59 AT4G12970.1
STOMAGEN
stomagen
Chr5_-_19899301 1.59 AT5G49100.1
AT5G49100
vitellogenin-like protein
Chr1_+_3530353 1.59 AT1G10657.4
AT1G10657.2
AT1G10657.3
AT1G10657.1
AT1G10657
transmembrane protein
Chr4_-_14872267 1.59 AT4G30410.1
AT4G30410.2
AT4G30410
sequence-specific DNA binding transcription factor
Chr4_+_160643 1.59 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr2_-_12785037 1.58 AT2G29980.2
FAD3
fatty acid desaturase 3
Chr5_+_22474142 1.58 AT5G55480.1
SVL1
SHV3-like 1
Chr3_-_18559326 1.57 AT3G50060.1
MYB77
myb domain protein 77
Chr5_+_5968352 1.57 AT5G18030.1
AT5G18030
SAUR-like auxin-responsive protein family
Chr5_-_23576084 1.57 AT5G58310.1
MES18
methyl esterase 18
Chr2_-_12785190 1.56 AT2G29980.1
FAD3
fatty acid desaturase 3
Chr1_+_11532199 1.56 AT1G32060.1
PRK
phosphoribulokinase
Chr1_+_23144385 1.55 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr2_-_14125526 1.55 AT2G33330.1
PDLP3
plasmodesmata-located protein 3
Chr5_+_1952505 1.55 AT5G06390.1
FLA17
FASCICLIN-like arabinogalactan protein 17 precursor
Chr5_-_3183484 1.54 AT5G10150.3
AT5G10150.4
AT5G10150
UPSTREAM OF FLC protein (DUF966)
Chr3_-_2130451 1.54 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr5_-_18371021 1.52 AT5G45340.2
AT5G45340.1
CYP707A3
cytochrome P450, family 707, subfamily A, polypeptide 3
Chr5_-_3183984 1.52 AT5G10150.2
AT5G10150.1
AT5G10150
UPSTREAM OF FLC protein (DUF966)
Chr2_-_11214662 1.52 AT2G26330.1
ER
Leucine-rich receptor-like protein kinase family protein
Chr4_+_8931617 1.52 AT4G15680.1
AT4G15680
Thioredoxin superfamily protein
Chr5_+_22397457 1.51 AT5G55220.1
AT5G55220
trigger factor type chaperone family protein
Chr3_+_6180621 1.51 AT3G18050.1
AT3G18050
GPI-anchored protein
Chr3_+_4389215 1.51 AT3G13470.1
Cpn60beta2
TCP-1/cpn60 chaperonin family protein
Chr2_+_10662190 1.51 AT2G25060.1
ENODL14
early nodulin-like protein 14
Chr1_+_24149208 1.51 AT1G65010.1
AT1G65010
WEB family protein (DUF827)
Chr1_-_6579314 1.51 AT1G19050.1
ARR7
response regulator 7
Chr1_-_28581315 1.50 AT1G76160.1
sks5
SKU5 similar 5
Chr3_-_6980523 1.50 AT3G20015.1
AT3G20015
Eukaryotic aspartyl protease family protein
Chr1_+_9534488 1.49 AT1G27460.2
AT1G27460.1
AT1G27460.3
NPGR1
no pollen germination related 1
Chr3_+_8194606 1.49 AT3G23050.1
AT3G23050.3
AT3G23050.2
IAA7
indole-3-acetic acid 7
Chr4_-_16384468 1.48 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr3_+_19713799 1.47 AT3G53190.1
AT3G53190
Pectin lyase-like superfamily protein
Chr4_+_8860462 1.47 AT4G15510.3
AT4G15510.1
AT4G15510.4
AT4G15510.5
AT4G15510.2
PPD1
Photosystem II reaction center PsbP family protein
Chr2_+_12805667 1.47 AT2G30010.2
AT2G30010.1
TBL45
TRICHOME BIREFRINGENCE-LIKE 45
Chr1_+_17065858 1.46 AT1G45130.2
BGAL5
beta-galactosidase 5
Chr1_-_18690503 1.46 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr5_+_24167996 1.45 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
Chr4_-_7591259 1.44 AT4G12980.1
AT4G12980
Auxin-responsive family protein
Chr5_+_6387341 1.44 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr4_-_10188981 1.44 AT4G18440.1
AT4G18440
L-Aspartase-like family protein
Chr1_+_11396402 1.43 AT1G31800.1
CYP97A3
cytochrome P450, family 97, subfamily A, polypeptide 3
Chr4_-_18428412 1.43 AT4G39710.2
AT4G39710.3
AT4G39710.1
PnsL4
FK506-binding protein 16-2
Chr1_+_1136078 1.43 AT1G04250.1
AXR3
AUX/IAA transcriptional regulator family protein
Chr5_-_345457 1.42 AT5G01890.1
AT5G01890
Leucine-rich receptor-like protein kinase family protein
Chr1_-_11872926 1.41 AT1G32780.1
AT1G32780
GroES-like zinc-binding dehydrogenase family protein
Chr3_-_9342223 1.40 AT3G25660.1
AT3G25660
Amidase family protein
Chr1_-_16709713 1.40 AT1G44000.1
AT1G44000
STAY-GREEN-like protein
Chr1_+_17065111 1.40 AT1G45130.1
BGAL5
beta-galactosidase 5
Chr2_+_9948594 1.40 AT2G23360.1
AT2G23360
filament-like protein (DUF869)
Chr4_+_14677661 1.40 AT4G30020.2
AT4G30020.3
AT4G30020
PA-domain containing subtilase family protein
Chr3_+_6105908 1.39 AT3G17840.1
RLK902
receptor-like kinase 902
Chr2_+_15934244 1.39 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr2_+_1289832 1.38 AT2G04032.1
ZIP7
zinc transporter 7 precursor
Chr2_+_9034056 1.38 AT2G21050.1
LAX2
like AUXIN RESISTANT 2
Chr5_+_4974671 1.37 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
MYB16
myb domain protein 16
Chr4_+_12376122 1.36 AT4G23750.1
AT4G23750.2
CRF2
cytokinin response factor 2
Chr3_+_10505711 1.36 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr2_-_9699915 1.36 AT2G22795.3
AT2G22795.2
AT2G22795.1
AT2G22795
hypothetical protein
Chr5_+_7778017 1.35 AT5G23120.2
AT5G23120.1
HCF136
photosystem II stability/assembly factor, chloroplast (HCF136)
Chr5_+_7394443 1.35 AT5G22340.1
AT5G22340.2
AT5G22340
NF-kappa-B inhibitor-like protein
Chr1_-_3518035 1.35 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr1_-_6940832 1.34 AT1G20010.1
TUB5
tubulin beta-5 chain
Chr1_+_26439556 1.34 AT1G70210.1
CYCD1%3B1
CYCLIN D1;1
Chr2_+_12254888 1.34 AT2G28605.1
AT2G28605
Photosystem II reaction center PsbP family protein
Chr1_-_5115497 1.33 AT1G14840.2
AT1G14840.1
MAP70-4
microtubule-associated proteins 70-4
Chr1_-_1307973 1.33 AT1G04680.1
AT1G04680
Pectin lyase-like superfamily protein
Chr1_+_27991165 1.33 AT1G74470.1
AT1G74470
Pyridine nucleotide-disulfide oxidoreductase family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G76890

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 6.9 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.8 14.3 GO:0006949 syncytium formation(GO:0006949)
0.8 2.3 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
0.7 0.7 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.7 2.6 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.6 1.9 GO:0035017 cuticle pattern formation(GO:0035017)
0.6 1.9 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.6 2.4 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.6 1.7 GO:0071258 cellular response to gravity(GO:0071258)
0.6 4.6 GO:0043489 RNA stabilization(GO:0043489)
0.5 2.2 GO:0090309 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.5 1.6 GO:0080051 cutin transport(GO:0080051)
0.5 2.7 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.5 1.6 GO:0007639 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.5 2.6 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.5 3.0 GO:0009650 UV protection(GO:0009650)
0.5 1.4 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.5 1.9 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.5 2.8 GO:0048629 trichome patterning(GO:0048629)
0.5 2.3 GO:0010683 tricyclic triterpenoid metabolic process(GO:0010683)
0.4 2.7 GO:0031116 positive regulation of microtubule polymerization(GO:0031116)
0.4 1.7 GO:0030417 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.4 1.3 GO:0019695 choline metabolic process(GO:0019695)
0.4 7.0 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.4 5.4 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.4 1.2 GO:0010541 acropetal auxin transport(GO:0010541)
0.4 3.0 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.4 1.1 GO:0030811 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.4 1.1 GO:0010220 positive regulation of vernalization response(GO:0010220)
0.4 1.8 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.3 1.7 GO:0010067 procambium histogenesis(GO:0010067)
0.3 7.4 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.3 0.7 GO:0009915 phloem sucrose loading(GO:0009915)
0.3 1.0 GO:0045717 negative regulation of fatty acid biosynthetic process(GO:0045717) regulation of cell cycle arrest(GO:0071156) positive regulation of cell cycle arrest(GO:0071158)
0.3 1.3 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.3 0.9 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.3 2.8 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.3 1.6 GO:0051318 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.3 2.2 GO:0015837 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.3 4.9 GO:0015976 carbon utilization(GO:0015976)
0.3 3.0 GO:0019676 ammonia assimilation cycle(GO:0019676)
0.3 1.8 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.3 1.5 GO:0046713 borate transport(GO:0046713)
0.3 4.7 GO:0048564 photosystem I assembly(GO:0048564)
0.3 2.1 GO:0006546 glycine catabolic process(GO:0006546) glycine decarboxylation via glycine cleavage system(GO:0019464)
0.3 1.1 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.3 1.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.3 1.1 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.3 6.1 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.3 3.5 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.3 1.9 GO:1901959 positive regulation of cutin biosynthetic process(GO:1901959)
0.3 1.1 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.3 2.4 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.3 4.4 GO:0010052 guard cell differentiation(GO:0010052)
0.3 0.8 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.3 16.0 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.3 0.3 GO:0048533 sporocyte differentiation(GO:0048533)
0.3 3.8 GO:1901072 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.3 1.0 GO:0097298 regulation of nucleus size(GO:0097298)
0.2 0.2 GO:0044848 cell cycle phase(GO:0022403) biological phase(GO:0044848) mitotic cell cycle phase(GO:0098763)
0.2 0.7 GO:1900364 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.2 1.7 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 0.7 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.2 5.7 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.2 1.1 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.2 0.7 GO:0010520 regulation of reciprocal meiotic recombination(GO:0010520) negative regulation of meiotic nuclear division(GO:0045835) negative regulation of meiotic cell cycle(GO:0051447)
0.2 2.3 GO:0009554 megasporogenesis(GO:0009554)
0.2 0.9 GO:0006346 methylation-dependent chromatin silencing(GO:0006346)
0.2 0.9 GO:0099636 cytoplasmic streaming(GO:0099636)
0.2 0.6 GO:1990532 stress response to nickel ion(GO:1990532)
0.2 0.4 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.2 1.6 GO:0009643 photosynthetic acclimation(GO:0009643)
0.2 1.4 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.2 1.2 GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly(GO:0010258)
0.2 0.6 GO:0090549 response to carbon starvation(GO:0090549)
0.2 1.4 GO:0051127 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.2 1.2 GO:0006000 fructose metabolic process(GO:0006000)
0.2 1.2 GO:0009099 valine biosynthetic process(GO:0009099)
0.2 0.2 GO:0034502 protein localization to chromosome(GO:0034502)
0.2 0.6 GO:0045793 positive regulation of cell size(GO:0045793)
0.2 1.4 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.2 0.6 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.2 0.8 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.2 1.1 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
0.2 3.9 GO:0019344 cysteine biosynthetic process(GO:0019344)
0.2 0.6 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.2 1.6 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.2 0.4 GO:0010376 stomatal complex formation(GO:0010376)
0.2 1.4 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.2 0.5 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.2 1.6 GO:0010088 phloem development(GO:0010088)
0.2 1.8 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.2 2.4 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.2 3.0 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.2 12.6 GO:0007018 microtubule-based movement(GO:0007018)
0.2 1.0 GO:0006565 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.2 0.5 GO:0043987 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.2 0.8 GO:0006571 tyrosine biosynthetic process(GO:0006571)
0.2 1.2 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 1.0 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.2 0.7 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.2 1.2 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.2 1.7 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.2 2.0 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.2 4.7 GO:0042335 cuticle development(GO:0042335)
0.2 0.5 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.2 1.7 GO:0010047 fruit dehiscence(GO:0010047)
0.2 0.6 GO:0031507 heterochromatin assembly(GO:0031507)
0.2 0.5 GO:0010045 response to nickel cation(GO:0010045)
0.2 2.2 GO:0030497 fatty acid elongation(GO:0030497)
0.2 0.3 GO:0051341 regulation of oxidoreductase activity(GO:0051341)
0.2 1.1 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.2 1.4 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.1 4.3 GO:0006284 base-excision repair(GO:0006284)
0.1 0.4 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 4.2 GO:0016132 phytosteroid biosynthetic process(GO:0016129) brassinosteroid biosynthetic process(GO:0016132)
0.1 0.1 GO:0010338 leaf formation(GO:0010338)
0.1 0.6 GO:0072718 response to cisplatin(GO:0072718)
0.1 1.3 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 2.6 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 1.7 GO:0006526 arginine biosynthetic process(GO:0006526)
0.1 0.6 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.1 1.9 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.1 1.8 GO:0019685 photosynthesis, dark reaction(GO:0019685)
0.1 0.3 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.4 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.1 0.5 GO:0048462 carpel formation(GO:0048462)
0.1 0.9 GO:0045492 xylan biosynthetic process(GO:0045492)
0.1 0.7 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 1.6 GO:0007143 female meiotic division(GO:0007143)
0.1 8.2 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 0.4 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.8 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.6 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.1 0.4 GO:0034982 mitochondrial protein processing(GO:0034982)
0.1 0.6 GO:0010117 photoprotection(GO:0010117)
0.1 0.5 GO:0034389 lipid particle organization(GO:0034389)
0.1 1.2 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 1.3 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.1 7.6 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 0.4 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.4 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 1.3 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.1 1.2 GO:0010206 photosystem II repair(GO:0010206)
0.1 0.7 GO:0009804 coumarin metabolic process(GO:0009804)
0.1 1.5 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 0.6 GO:0006013 mannose metabolic process(GO:0006013)
0.1 1.1 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.1 0.4 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.4 GO:0090342 regulation of cell aging(GO:0090342)
0.1 0.4 GO:0016120 carotene biosynthetic process(GO:0016120)
0.1 1.5 GO:0005986 sucrose biosynthetic process(GO:0005986)
0.1 1.5 GO:0010274 hydrotropism(GO:0010274)
0.1 0.5 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.1 0.4 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.6 GO:0010569 regulation of double-strand break repair via homologous recombination(GO:0010569)
0.1 0.3 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.1 2.3 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 0.1 GO:0010070 zygote asymmetric cell division(GO:0010070)
0.1 0.7 GO:0080117 secondary growth(GO:0080117)
0.1 0.8 GO:1902299 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 0.5 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.1 1.0 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.1 0.3 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 2.8 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.1 2.2 GO:0080155 regulation of fertilization(GO:0080154) regulation of double fertilization forming a zygote and endosperm(GO:0080155)
0.1 0.4 GO:0060429 epithelium development(GO:0060429)
0.1 1.9 GO:0010167 response to nitrate(GO:0010167)
0.1 0.2 GO:1990573 potassium ion import across plasma membrane(GO:1990573)
0.1 0.3 GO:0009662 etioplast organization(GO:0009662)
0.1 7.7 GO:0045490 pectin catabolic process(GO:0045490)
0.1 0.5 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.1 0.9 GO:0032042 mitochondrial DNA metabolic process(GO:0032042)
0.1 0.7 GO:0044375 regulation of peroxisome size(GO:0044375)
0.1 8.8 GO:0015979 photosynthesis(GO:0015979)
0.1 4.3 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.1 2.4 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.1 0.2 GO:0071836 nectar secretion(GO:0071836)
0.1 0.3 GO:0043467 regulation of generation of precursor metabolites and energy(GO:0043467)
0.1 0.4 GO:0080119 ER body organization(GO:0080119)
0.1 0.4 GO:0035627 ceramide transport(GO:0035627)
0.1 0.5 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.1 0.3 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.1 0.4 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.4 GO:0030322 stabilization of membrane potential(GO:0030322)
0.1 0.1 GO:0048479 style development(GO:0048479) stigma development(GO:0048480)
0.1 0.4 GO:0031335 regulation of ethylene biosynthetic process(GO:0010364) regulation of sulfur amino acid metabolic process(GO:0031335) regulation of olefin metabolic process(GO:1900908) regulation of olefin biosynthetic process(GO:1900911)
0.1 1.5 GO:0010152 pollen maturation(GO:0010152)
0.1 1.6 GO:0006730 one-carbon metabolic process(GO:0006730)
0.1 0.5 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 0.2 GO:0017145 stem cell division(GO:0017145)
0.1 2.3 GO:0030050 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.1 0.3 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 0.3 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 1.6 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.1 0.2 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 0.8 GO:0010315 auxin efflux(GO:0010315)
0.1 0.7 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.1 2.0 GO:0010449 root meristem growth(GO:0010449)
0.1 0.7 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.1 0.6 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 2.7 GO:0009809 lignin biosynthetic process(GO:0009809)
0.1 3.9 GO:0007267 cell-cell signaling(GO:0007267)
0.1 0.2 GO:0051101 regulation of DNA binding(GO:0051101)
0.1 0.7 GO:0048598 embryonic morphogenesis(GO:0048598)
0.1 0.9 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.1 0.4 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.1 0.7 GO:0097354 protein prenylation(GO:0018342) prenylation(GO:0097354)
0.1 0.2 GO:0060860 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.1 3.3 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.1 1.5 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.1 0.9 GO:0046653 tetrahydrofolate metabolic process(GO:0046653)
0.1 0.3 GO:0051031 tRNA export from nucleus(GO:0006409) tRNA transport(GO:0051031) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.1 1.5 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 0.8 GO:0032409 regulation of transporter activity(GO:0032409)
0.1 1.0 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.6 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 0.5 GO:0007130 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.1 0.2 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.1 0.9 GO:0019471 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.1 0.9 GO:0010215 cellulose microfibril organization(GO:0010215)
0.1 0.2 GO:0090307 mitotic spindle assembly(GO:0090307) microtubule cytoskeleton organization involved in mitosis(GO:1902850)
0.1 0.4 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.1 0.8 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.1 0.2 GO:0006425 glutaminyl-tRNA aminoacylation(GO:0006425)
0.1 0.2 GO:1903321 negative regulation of protein modification by small protein conjugation or removal(GO:1903321)
0.1 1.1 GO:0010075 regulation of meristem growth(GO:0010075)
0.1 0.8 GO:0045040 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1 1.8 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 0.3 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 0.2 GO:0000492 box C/D snoRNP assembly(GO:0000492)
0.1 2.8 GO:0045454 cell redox homeostasis(GO:0045454)
0.1 1.3 GO:0010183 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.1 0.4 GO:0046471 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.1 0.2 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 0.8 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.1 0.7 GO:0048766 root hair initiation(GO:0048766)
0.1 1.7 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.1 0.3 GO:0007142 male meiosis II(GO:0007142)
0.1 1.2 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.7 GO:0006270 DNA replication initiation(GO:0006270)
0.1 1.1 GO:0010091 trichome branching(GO:0010091)
0.0 0.1 GO:0034486 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.0 1.0 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.6 GO:0048658 anther wall tapetum development(GO:0048658)
0.0 0.7 GO:0008356 asymmetric cell division(GO:0008356)
0.0 5.3 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.0 0.3 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.6 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.7 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.2 GO:0071732 cellular response to nitric oxide(GO:0071732)
0.0 0.4 GO:0006670 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.2 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 1.6 GO:0009559 embryo sac central cell differentiation(GO:0009559)
0.0 0.2 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 2.6 GO:0006400 tRNA modification(GO:0006400)
0.0 0.2 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.0 0.3 GO:0042776 mitochondrial ATP synthesis coupled proton transport(GO:0042776)
0.0 0.4 GO:0010345 suberin biosynthetic process(GO:0010345)
0.0 0.8 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 1.1 GO:0098727 stem cell population maintenance(GO:0019827) maintenance of cell number(GO:0098727)
0.0 1.1 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.7 GO:0051510 regulation of unidimensional cell growth(GO:0051510)
0.0 2.0 GO:0010114 response to red light(GO:0010114)
0.0 0.4 GO:0010039 response to iron ion(GO:0010039)
0.0 0.7 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.4 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 0.2 GO:2000069 regulation of post-embryonic root development(GO:2000069)
0.0 0.5 GO:0009299 mRNA transcription(GO:0009299)
0.0 4.4 GO:0009932 cell tip growth(GO:0009932)
0.0 0.7 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.0 0.4 GO:0001709 cell fate determination(GO:0001709)
0.0 0.9 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.3 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 0.6 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 1.4 GO:0009694 jasmonic acid metabolic process(GO:0009694)
0.0 0.9 GO:0045165 cell fate commitment(GO:0045165)
0.0 0.8 GO:0006094 gluconeogenesis(GO:0006094)
0.0 0.2 GO:0007043 cell-cell junction assembly(GO:0007043)
0.0 0.2 GO:0042276 error-prone translesion synthesis(GO:0042276)
0.0 4.4 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.0 0.9 GO:0009395 phospholipid catabolic process(GO:0009395)
0.0 0.2 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 0.4 GO:0006368 transcription elongation from RNA polymerase II promoter(GO:0006368)
0.0 2.0 GO:0007010 cytoskeleton organization(GO:0007010)
0.0 0.8 GO:0010051 xylem and phloem pattern formation(GO:0010051)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.2 GO:0046135 pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135)
0.0 1.9 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.0 0.8 GO:0010090 trichome morphogenesis(GO:0010090)
0.0 0.1 GO:0046246 terpene biosynthetic process(GO:0046246)
0.0 1.4 GO:0000724 double-strand break repair via homologous recombination(GO:0000724)
0.0 0.3 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.0 0.1 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.0 0.3 GO:0006265 DNA topological change(GO:0006265)
0.0 0.5 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.3 GO:0048859 formation of organ boundary(GO:0010160) organ formation(GO:0048645) formation of anatomical boundary(GO:0048859)
0.0 0.2 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.7 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.4 GO:0048825 cotyledon development(GO:0048825)
0.0 0.5 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 0.1 GO:0015904 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.0 0.1 GO:0006855 drug transmembrane transport(GO:0006855)
0.0 0.1 GO:0006022 aminoglycan metabolic process(GO:0006022)
0.0 0.4 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.2 GO:0006303 non-recombinational repair(GO:0000726) double-strand break repair via nonhomologous end joining(GO:0006303)
0.0 0.1 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.1 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.1 GO:0009866 induced systemic resistance, ethylene mediated signaling pathway(GO:0009866)
0.0 0.1 GO:0001887 selenium compound metabolic process(GO:0001887)
0.0 0.3 GO:0006112 glycogen metabolic process(GO:0005977) energy reserve metabolic process(GO:0006112)
0.0 0.3 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.2 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.1 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.2 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.1 GO:1902025 nitrate import(GO:1902025)
0.0 0.6 GO:0006418 tRNA aminoacylation for protein translation(GO:0006418)
0.0 0.2 GO:0034030 coenzyme A biosynthetic process(GO:0015937) nucleoside bisphosphate biosynthetic process(GO:0033866) ribonucleoside bisphosphate biosynthetic process(GO:0034030) purine nucleoside bisphosphate biosynthetic process(GO:0034033)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 1.1 GO:0009521 photosystem(GO:0009521)
0.9 2.8 GO:0043668 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.6 5.0 GO:0030076 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.4 1.6 GO:0010330 cellulose synthase complex(GO:0010330)
0.4 3.5 GO:0010369 chromocenter(GO:0010369)
0.3 4.4 GO:0045298 tubulin complex(GO:0045298)
0.3 1.6 GO:0010007 magnesium chelatase complex(GO:0010007)
0.3 19.3 GO:0031977 thylakoid lumen(GO:0031977)
0.2 1.0 GO:0032044 DSIF complex(GO:0032044)
0.2 3.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.2 1.4 GO:0009360 DNA polymerase III complex(GO:0009360)
0.2 1.4 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.2 5.4 GO:0005871 kinesin complex(GO:0005871)
0.2 0.7 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.2 0.8 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.2 3.0 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.2 2.1 GO:0031209 SCAR complex(GO:0031209)
0.2 2.3 GO:0009523 photosystem II(GO:0009523)
0.2 1.9 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.2 1.1 GO:0071818 BAT3 complex(GO:0071818)
0.2 0.9 GO:0090397 stigma papilla(GO:0090397)
0.2 54.3 GO:0009534 chloroplast thylakoid(GO:0009534)
0.2 0.8 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.2 2.6 GO:0009531 secondary cell wall(GO:0009531)
0.1 0.7 GO:0033597 mitotic checkpoint complex(GO:0033597)
0.1 4.2 GO:0005875 microtubule associated complex(GO:0005875)
0.1 0.7 GO:0009897 external side of plasma membrane(GO:0009897)
0.1 2.8 GO:0009574 preprophase band(GO:0009574)
0.1 1.5 GO:0072686 mitotic spindle(GO:0072686)
0.1 0.5 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.1 18.1 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 0.7 GO:0035861 site of double-strand break(GO:0035861)
0.1 0.3 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 0.6 GO:0000796 condensin complex(GO:0000796)
0.1 0.6 GO:0045254 pyruvate dehydrogenase complex(GO:0045254)
0.1 5.2 GO:0005874 microtubule(GO:0005874)
0.1 0.4 GO:0030870 Mre11 complex(GO:0030870)
0.1 1.0 GO:0010319 stromule(GO:0010319)
0.1 0.5 GO:0010168 ER body(GO:0010168)
0.1 10.0 GO:0031225 anchored component of membrane(GO:0031225)
0.1 0.4 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.1 20.9 GO:0048046 apoplast(GO:0048046)
0.1 12.7 GO:0009505 plant-type cell wall(GO:0009505)
0.1 0.8 GO:0005720 nuclear heterochromatin(GO:0005720)
0.1 0.5 GO:0030893 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.1 0.7 GO:0016272 prefoldin complex(GO:0016272)
0.1 1.2 GO:0016459 myosin complex(GO:0016459)
0.1 0.4 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.1 0.8 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 0.4 GO:0043073 germ cell nucleus(GO:0043073)
0.1 0.3 GO:0042721 mitochondrial inner membrane protein insertion complex(GO:0042721)
0.1 0.3 GO:0030663 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.1 0.7 GO:0009986 cell surface(GO:0009986)
0.1 1.7 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 116.5 GO:0005576 extracellular region(GO:0005576)
0.1 0.4 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 0.2 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 1.4 GO:0005811 lipid particle(GO:0005811)
0.0 0.7 GO:0000347 THO complex(GO:0000347)
0.0 0.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.7 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.8 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.5 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.1 GO:0043186 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.0 0.9 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.2 GO:0005787 signal peptidase complex(GO:0005787)
0.0 12.7 GO:0009941 chloroplast envelope(GO:0009941)
0.0 0.2 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.2 GO:0000779 condensed chromosome, centromeric region(GO:0000779)
0.0 0.3 GO:0071007 U2-type catalytic step 2 spliceosome(GO:0071007)
0.0 0.1 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.0 0.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.0 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 0.1 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.0 0.0 GO:0034702 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.1 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.1 GO:0043078 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.0 4.5 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.2 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.1 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.3 GO:0005680 anaphase-promoting complex(GO:0005680)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 7.0 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.8 2.4 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.8 2.3 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
0.7 3.5 GO:0042084 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.6 1.9 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.6 2.4 GO:0050162 oxalate oxidase activity(GO:0050162)
0.6 2.4 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.6 4.6 GO:0019137 thioglucosidase activity(GO:0019137)
0.6 1.7 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.5 17.4 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.5 1.6 GO:0015026 coreceptor activity(GO:0015026)
0.5 13.0 GO:0016168 chlorophyll binding(GO:0016168)
0.5 1.4 GO:0016842 amidine-lyase activity(GO:0016842)
0.5 1.4 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.5 1.4 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.5 6.1 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.4 1.8 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.4 1.8 GO:0009885 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
0.4 1.7 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.4 1.3 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.4 1.6 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.4 1.2 GO:0061731 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.4 0.4 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.4 2.2 GO:0051002 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.4 1.8 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.3 1.7 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.3 3.0 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.3 6.7 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.3 3.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.3 0.9 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.3 1.5 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.3 1.2 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.3 2.4 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.3 1.2 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.3 1.1 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.3 6.6 GO:0004565 beta-galactosidase activity(GO:0004565)
0.3 5.7 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.3 5.9 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.3 2.0 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.2 0.7 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.2 1.7 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.2 1.5 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.2 0.7 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.2 5.9 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.2 7.8 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.2 0.7 GO:0016418 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.2 2.5 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 0.8 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.2 0.6 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.2 0.8 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.2 1.4 GO:0034237 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.2 6.4 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.2 0.8 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.2 0.8 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.2 2.3 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.2 0.8 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.2 1.0 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.2 0.8 GO:0004075 biotin carboxylase activity(GO:0004075)
0.2 3.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.2 1.6 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.2 4.8 GO:0008810 cellulase activity(GO:0008810)
0.2 0.7 GO:0015929 hexosaminidase activity(GO:0015929)
0.2 13.0 GO:0003777 microtubule motor activity(GO:0003777)
0.2 3.0 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.2 8.3 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.2 1.9 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.2 0.7 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.2 0.5 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.2 0.6 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.2 1.8 GO:0008199 ferric iron binding(GO:0008199)
0.2 0.5 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
0.2 2.0 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.1 1.0 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.1 1.2 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 1.0 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 2.0 GO:0080161 auxin efflux transmembrane transporter activity(GO:0010329) auxin transmembrane transporter activity(GO:0080161)
0.1 4.9 GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628)
0.1 0.6 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 2.8 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 0.8 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 1.5 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.4 GO:0004150 dihydroneopterin aldolase activity(GO:0004150)
0.1 0.4 GO:0008481 sphinganine kinase activity(GO:0008481)
0.1 1.6 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.1 1.1 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 0.4 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.1 1.1 GO:0008083 growth factor activity(GO:0008083)
0.1 1.2 GO:0000400 four-way junction DNA binding(GO:0000400)
0.1 0.9 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 2.0 GO:0016157 sucrose synthase activity(GO:0016157)
0.1 0.5 GO:0035174 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.1 1.7 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 0.8 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.1 1.0 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.1 0.6 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 0.5 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.1 0.4 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 1.2 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.1 1.1 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.1 1.5 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1 3.6 GO:0008266 poly(U) RNA binding(GO:0008266)
0.1 1.7 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 1.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.1 2.2 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.1 0.8 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 1.9 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.1 6.5 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 0.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.1 1.0 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.1 0.1 GO:0001016 polymerase III regulatory region sequence-specific DNA binding(GO:0000992) RNA polymerase III type 3 promoter sequence-specific DNA binding(GO:0001006) RNA polymerase III regulatory region DNA binding(GO:0001016) RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.1 0.4 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.1 1.2 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.1 0.4 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.1 0.8 GO:0017116 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.1 0.5 GO:0004127 cytidylate kinase activity(GO:0004127)
0.1 0.3 GO:0050377 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.1 0.8 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.1 0.8 GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.1 0.5 GO:0003680 AT DNA binding(GO:0003680)
0.1 1.4 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.1 1.3 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 2.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.4 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.9 GO:0008169 C-methyltransferase activity(GO:0008169)
0.1 0.9 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.1 0.6 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.1 0.8 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.1 0.4 GO:0046624 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.1 1.2 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.4 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.1 0.4 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.1 1.2 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.1 0.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.6 GO:0001671 ATPase activator activity(GO:0001671)
0.1 1.6 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.1 0.6 GO:0004738 pyruvate dehydrogenase activity(GO:0004738) pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 0.4 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 2.3 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 0.7 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.1 0.4 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 1.3 GO:0004630 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.1 0.5 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 3.6 GO:0016759 cellulose synthase activity(GO:0016759)
0.1 5.0 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 1.0 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 5.8 GO:0008017 microtubule binding(GO:0008017)
0.1 0.6 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.1 0.2 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.1 0.8 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.1 0.3 GO:0016676 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.1 0.6 GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters(GO:0016888)
0.1 0.8 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.1 0.5 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.5 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.1 0.3 GO:0004831 tyrosine-tRNA ligase activity(GO:0004831)
0.1 0.7 GO:0008318 protein prenyltransferase activity(GO:0008318)
0.1 0.5 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 0.7 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.1 0.7 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 1.3 GO:0010333 terpene synthase activity(GO:0010333)
0.1 0.2 GO:0015377 anion:cation symporter activity(GO:0015296) cation:chloride symporter activity(GO:0015377)
0.1 0.2 GO:0015292 uniporter activity(GO:0015292)
0.1 1.2 GO:0008146 sulfotransferase activity(GO:0008146)
0.1 0.9 GO:0004656 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.1 0.2 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.4 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.1 0.2 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.1 0.3 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.1 0.2 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.1 0.8 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.1 2.8 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 0.4 GO:0019825 oxygen binding(GO:0019825)
0.1 2.3 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 0.3 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.1 2.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.1 0.2 GO:0052924 trans-octaprenyltranstransferase activity(GO:0050347) all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity(GO:0052924)
0.1 0.1 GO:0015119 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.1 6.1 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 0.4 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.1 0.2 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.0 14.5 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 1.2 GO:0004568 chitinase activity(GO:0004568)
0.0 0.6 GO:0102391 acyl-CoA ligase activity(GO:0003996) decanoate--CoA ligase activity(GO:0102391)
0.0 0.1 GO:0045437 uridine nucleosidase activity(GO:0045437) ribosylpyrimidine nucleosidase activity(GO:0050263)
0.0 0.5 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.0 0.3 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 3.1 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.5 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.8 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.6 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.2 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.6 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.0 1.3 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.2 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.0 0.8 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.2 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 2.1 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 1.1 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 0.4 GO:0008175 tRNA methyltransferase activity(GO:0008175)
0.0 1.1 GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
0.0 0.2 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.3 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.0 0.6 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.3 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 0.2 GO:0004049 anthranilate synthase activity(GO:0004049)
0.0 0.5 GO:0000155 phosphorelay sensor kinase activity(GO:0000155)
0.0 0.3 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.0 0.3 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 1.0 GO:0005179 hormone activity(GO:0005179)
0.0 1.7 GO:0043621 protein self-association(GO:0043621)
0.0 0.7 GO:0031386 protein tag(GO:0031386)
0.0 0.1 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.0 0.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 1.3 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.2 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.0 0.7 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.2 GO:0032977 membrane insertase activity(GO:0032977)
0.0 0.1 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 1.3 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.3 GO:0015631 tubulin binding(GO:0015631)
0.0 0.1 GO:0050113 inositol oxygenase activity(GO:0050113)
0.0 1.6 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.2 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.5 GO:0008066 glutamate receptor activity(GO:0008066)
0.0 0.4 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 1.1 GO:0080043 quercetin 3-O-glucosyltransferase activity(GO:0080043)
0.0 0.1 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.0 0.1 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.1 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.0 0.1 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.2 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.0 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.0 1.0 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.1 GO:0008187 poly-pyrimidine tract binding(GO:0008187)
0.0 1.1 GO:0003779 actin binding(GO:0003779)
0.0 0.3 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.1 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.1 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.1 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 PID IL12 2PATHWAY IL12-mediated signaling events
0.3 1.0 PID AURORA A PATHWAY Aurora A signaling
0.2 2.2 PID FANCONI PATHWAY Fanconi anemia pathway
0.2 0.6 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.2 0.9 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.1 1.1 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.4 PID S1P META PATHWAY Sphingosine 1-phosphate (S1P) pathway
0.1 0.2 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.1 0.2 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events
0.0 0.2 PID AJDISS 2PATHWAY Posttranslational regulation of adherens junction stability and dissassembly
0.0 0.1 PID ERA GENOMIC PATHWAY Validated nuclear estrogen receptor alpha network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 4.9 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.6 2.2 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.2 0.7 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.2 1.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.2 0.6 REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha
0.2 0.9 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.2 0.5 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.2 1.4 REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND Genes involved in Processive synthesis on the lagging strand
0.2 0.6 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.2 0.5 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.4 REACTOME SPHINGOLIPID METABOLISM Genes involved in Sphingolipid metabolism
0.1 1.0 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.1 0.8 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.4 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.1 0.5 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.2 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.3 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.0 0.1 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.1 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.0 0.2 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production