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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G74480
Z-value: 0.50
Transcription factors associated with AT1G74480
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G74480
|
AT1G74480 | RWP-RK domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RKD2 | arTal_v1_Chr1_-_27994178_27994178 | -0.06 | 7.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_3300515_3300516 Show fit | 0.68 |
AT1G10095.4
AT1G10095.2 AT1G10095.3 AT1G10095.1 |
Protein prenylyltransferase superfamily protein |
|
| arTal_v1_Chr3_+_19417372_19417401 Show fit | 0.65 |
AT3G52370.2
AT3G52370.1 |
FASCICLIN-like arabinogalactan protein 15 precursor |
|
| arTal_v1_Chr3_-_18559326_18559326 Show fit | 0.61 |
AT3G50060.1
|
myb domain protein 77 |
|
| arTal_v1_Chr5_+_1427117_1427117 Show fit | 0.52 |
AT5G04890.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr5_-_6174944_6174944 Show fit | 0.45 |
AT5G18570.1
|
GTP1/OBG family protein |
|
| arTal_v1_Chr1_+_310169_310169 Show fit | 0.45 |
AT1G01900.1
|
subtilase family protein |
|
| arTal_v1_Chr4_-_17979740_17979885 Show fit | 0.45 |
AT4G38400.1
AT4G38401.1 |
expansin-like A2 hypothetical protein |
|
| arTal_v1_Chr1_+_2097106_2097106 Show fit | 0.40 |
AT1G06830.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr1_-_4443954_4443954 Show fit | 0.37 |
AT1G13020.1
|
eukaryotic initiation factor 4B2 |
|
| arTal_v1_Chr4_-_524249_524249 Show fit | 0.37 |
AT4G01250.1
|
WRKY family transcription factor |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G74480
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | GO:0009959 | negative gravitropism(GO:0009959) |
| 0.2 | 0.7 | GO:0015742 | alpha-ketoglutarate transport(GO:0015742) |
| 0.1 | 0.6 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.1 | 0.6 | GO:0080165 | callose deposition in phloem sieve plate(GO:0080165) |
| 0.0 | 0.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 0.5 | GO:0046741 | transport of virus in host, tissue to tissue(GO:0046741) |
| 0.0 | 0.5 | GO:0097354 | protein prenylation(GO:0018342) prenylation(GO:0097354) |
| 0.0 | 0.5 | GO:0085029 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.1 | 0.3 | GO:0010377 | guard cell fate commitment(GO:0010377) |
| 0.1 | 0.3 | GO:0048657 | anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.2 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.2 | GO:0046695 | SLIK (SAGA-like) complex(GO:0046695) |
| 0.0 | 0.2 | GO:0009360 | DNA polymerase III complex(GO:0009360) |
| 0.0 | 0.2 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
| 0.0 | 0.2 | GO:0016459 | myosin complex(GO:0016459) |
| 0.0 | 0.2 | GO:0048500 | signal recognition particle(GO:0048500) |
| 0.0 | 0.1 | GO:0005846 | nuclear cap binding complex(GO:0005846) |
| 0.0 | 0.1 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.1 | GO:0031379 | RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0015367 | oxoglutarate:malate antiporter activity(GO:0015367) |
| 0.1 | 0.7 | GO:0008318 | protein prenyltransferase activity(GO:0008318) |
| 0.0 | 0.6 | GO:0102391 | decanoate--CoA ligase activity(GO:0102391) |
| 0.0 | 0.6 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 0.5 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.0 | 0.4 | GO:0018024 | histone-lysine N-methyltransferase activity(GO:0018024) |
| 0.1 | 0.3 | GO:0046422 | violaxanthin de-epoxidase activity(GO:0046422) |
| 0.1 | 0.3 | GO:0052654 | L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
| 0.0 | 0.3 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.0 | 0.3 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.2 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.1 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.1 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |