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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G69010
Z-value: 1.07
Transcription factors associated with AT1G69010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69010
|
AT1G69010 | BES1-interacting Myc-like protein 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BIM2 | arTal_v1_Chr1_+_25941629_25941629 | -0.85 | 1.0e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.54 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 3.04 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 2.89 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 2.84 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.50 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 2.49 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.48 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.47 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.43 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.40 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 15.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.3 | 12.8 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
| 0.9 | 11.7 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.6 | 10.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 10.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.5 | 8.2 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 7.8 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.2 | 7.4 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
| 0.1 | 7.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 49.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 38.9 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 35.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 29.6 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 20.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.5 | 19.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 18.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 14.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.4 | 10.2 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.5 | 7.1 | GO:0045298 | tubulin complex(GO:0045298) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 12.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 12.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 11.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.4 | 11.5 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 10.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 8.7 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.3 | 8.5 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 8.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 6.5 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 9.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.8 | 3.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 1.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.3 | 0.9 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.2 | 0.2 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 9.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 7.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.1 | 1.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.3 | 1.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.8 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.2 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |