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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G53910
Z-value: 1.66
Transcription factors associated with AT1G53910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G53910
|
AT1G53910 | related to AP2 12 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.12 | arTal_v1_Chr1_+_20135100_20135112 | 0.81 | 1.4e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 7.74 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 7.45 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 6.62 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 6.34 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr3_-_16923299_16923299 Show fit | 5.72 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 5.65 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 5.58 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 5.53 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 5.45 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 5.36 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G53910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 20.0 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.1 | 18.1 | GO:0010228 | vegetative to reproductive phase transition of meristem(GO:0010228) |
| 0.1 | 18.1 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.2 | 17.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.4 | 17.6 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.4 | 17.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 17.0 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.1 | 14.4 | GO:0007568 | aging(GO:0007568) |
| 0.1 | 13.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 50.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 41.7 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 31.2 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 15.8 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.0 | 11.8 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 10.8 | GO:0005730 | nucleolus(GO:0005730) |
| 0.6 | 9.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 8.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 8.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 6.9 | GO:0016592 | mediator complex(GO:0016592) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 28.7 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.2 | 25.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 23.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 23.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 21.3 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 16.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.3 | 12.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 12.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 1.0 | 11.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.9 | 2.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 1.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.3 | 1.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 1.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.6 | 1.1 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
| 0.4 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID P73PATHWAY | p73 transcription factor network |
| 0.4 | 0.4 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.7 | 2.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.5 | 2.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 2.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.2 | 2.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.3 | 2.2 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.3 | 1.9 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.6 | 1.8 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.4 | 1.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 1.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |