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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G52150
Z-value: 0.44
Transcription factors associated with AT1G52150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G52150
|
AT1G52150 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATHB-15 | arTal_v1_Chr1_-_19414678_19414764 | -0.48 | 9.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.21 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.16 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 0.91 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 0.90 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 0.87 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 0.83 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 0.83 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 0.81 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_3008910_3008910 Show fit | 0.80 |
AT1G09310.1
|
plant/protein (Protein of unknown function, DUF538) |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 0.77 |
AT5G14740.9
|
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G52150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 2.5 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.4 | 2.3 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.0 | 2.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 2.0 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.9 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.0 | 1.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 1.5 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.1 | 1.5 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 4.9 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 4.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 2.3 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 1.2 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.0 | 1.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.1 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.1 | 1.0 | GO:0009531 | secondary cell wall(GO:0009531) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 2.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 2.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 2.4 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 2.1 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.1 | 2.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 2.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 1.9 | GO:0005179 | hormone activity(GO:0005179) |
| 0.1 | 1.8 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 1.6 | GO:0016759 | cellulose synthase activity(GO:0016759) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.0 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.6 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.4 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.0 | 0.4 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.2 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |