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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G08010
Z-value: 2.30
Transcription factors associated with AT1G08010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G08010
|
AT1G08010 | GATA transcription factor 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA11 | arTal_v1_Chr1_-_2487506_2487506 | 0.61 | 5.5e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 2.68 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 2.57 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 2.46 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr5_-_8659352_8659352 Show fit | 2.28 |
AT5G25110.1
|
CBL-interacting protein kinase 25 |
|
| arTal_v1_Chr1_-_20967162_20967180 Show fit | 2.20 |
AT1G56060.2
AT1G56060.1 |
cysteine-rich/transmembrane domain protein B |
|
| arTal_v1_Chr5_+_8202919_8203003 Show fit | 2.08 |
AT5G24200.1
AT5G24200.2 AT5G24200.3 |
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_+_1025_1025 Show fit | 2.07 |
AT2G01008.1
|
maternal effect embryo arrest protein |
|
| arTal_v1_Chr5_+_523257_523257 Show fit | 2.05 |
AT5G02420.1
|
cyclin-dependent kinase inhibitor SMR3-like protein |
|
| arTal_v1_Chr4_-_11694564_11694590 Show fit | 1.92 |
AT4G22070.3
AT4G22070.4 AT4G22070.1 AT4G22070.2 |
WRKY DNA-binding protein 31 |
|
| arTal_v1_Chr5_+_6192327_6192443 Show fit | 1.91 |
AT5G18610.2
AT5G18610.3 AT5G18610.1 |
Protein kinase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G08010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.1 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.0 | 5.4 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 4.6 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.1 | 4.1 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.0 | 4.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 3.7 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
| 0.1 | 3.3 | GO:0051085 | 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
| 0.1 | 3.3 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.4 | 3.2 | GO:0009920 | cell plate formation involved in plant-type cell wall biogenesis(GO:0009920) |
| 0.1 | 3.2 | GO:0030091 | protein repair(GO:0030091) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.4 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 13.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 11.5 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 6.5 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 6.0 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 5.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 3.5 | GO:1990904 | ribonucleoprotein complex(GO:1990904) |
| 0.1 | 3.3 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 3.1 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.0 | 3.1 | GO:0022626 | cytosolic ribosome(GO:0022626) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.5 | GO:0005198 | structural molecule activity(GO:0005198) |
| 0.1 | 10.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.6 | 6.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 5.0 | GO:0042393 | histone binding(GO:0042393) |
| 0.1 | 4.0 | GO:0022884 | protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884) |
| 0.2 | 3.7 | GO:0003756 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
| 0.0 | 3.6 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.8 | 3.3 | GO:0004385 | guanylate kinase activity(GO:0004385) |
| 0.2 | 3.3 | GO:0003746 | translation elongation factor activity(GO:0003746) |
| 0.0 | 3.3 | GO:0003924 | GTPase activity(GO:0003924) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.9 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 0.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.7 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.6 | 1.9 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.9 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.3 | 0.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 0.5 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.5 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.1 | 0.5 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |