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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G06280
Z-value: 2.90
Transcription factors associated with AT1G06280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G06280
|
AT1G06280 | LOB domain-containing protein 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD2 | arTal_v1_Chr1_-_1920949_1920949 | 0.08 | 6.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 10.45 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 9.37 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 8.59 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 8.20 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 7.92 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 7.91 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 7.73 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 7.67 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 7.50 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 7.36 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G06280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 98.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 62.1 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.2 | 43.7 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.1 | 34.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.5 | 30.1 | GO:0034976 | response to endoplasmic reticulum stress(GO:0034976) |
| 0.6 | 27.9 | GO:0002239 | response to oomycetes(GO:0002239) |
| 1.1 | 22.2 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
| 0.6 | 22.1 | GO:0009625 | response to insect(GO:0009625) |
| 0.4 | 18.6 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.5 | 18.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 53.1 | GO:0098588 | bounding membrane of organelle(GO:0098588) |
| 0.0 | 44.0 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 29.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 28.5 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 25.5 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 22.7 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.5 | 21.2 | GO:0005764 | lysosome(GO:0005764) |
| 1.0 | 19.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 17.2 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 0.1 | 16.2 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 43.9 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.6 | 41.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 40.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.3 | 39.6 | GO:0061659 | ubiquitin-like protein ligase activity(GO:0061659) |
| 0.3 | 35.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 29.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 24.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.3 | 20.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 20.4 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.9 | 20.1 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.7 | 3.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 3.0 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.7 | 2.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 1.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 1.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.4 | 1.1 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 1.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 1.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 7.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.6 | 6.9 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 1.0 | 6.1 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
| 1.6 | 4.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.6 | 4.2 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 0.7 | 4.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.6 | 3.0 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.6 | 2.9 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.5 | 2.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.4 | 2.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |