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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G03800
Z-value: 1.64
Transcription factors associated with AT1G03800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G03800
|
AT1G03800 | ERF domain protein 10 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF10 | arTal_v1_Chr1_-_958383_958383 | 0.37 | 5.0e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 8.98 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 8.80 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 7.92 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 7.68 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 6.82 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 6.76 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 6.60 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 6.49 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 6.24 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 6.07 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G03800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 36.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.4 | 34.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 17.2 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.4 | 16.0 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.4 | 15.0 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.2 | 14.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 14.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 12.4 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 1.1 | 12.3 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.3 | 11.6 | GO:0042335 | cuticle development(GO:0042335) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 114.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 93.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 59.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 41.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.8 | 37.4 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.8 | 31.7 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 29.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 22.4 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 1.6 | 12.9 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 1.4 | 12.3 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 24.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 22.0 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.3 | 20.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.3 | 18.4 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.3 | 17.5 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 16.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 16.0 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.6 | 15.7 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.7 | 13.8 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 13.7 | GO:0008017 | microtubule binding(GO:0008017) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.5 | 3.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.6 | 2.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.3 | 2.3 | PID E2F PATHWAY | E2F transcription factor network |
| 0.5 | 1.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 7.4 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.6 | 4.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 3.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.7 | 3.3 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.9 | 2.8 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.6 | 1.9 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.4 | 1.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.4 | 1.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.2 | 1.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |