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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G16750
Z-value: 1.35
Transcription factors associated with AT4G16750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G16750
|
AT4G16750 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G16750 | arTal_v1_Chr4_-_9421857_9421857 | -0.37 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 2.15 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.11 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 1.80 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 1.80 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 1.78 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 1.77 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.65 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 1.61 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 1.56 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr3_-_3993886_3993886 Show fit | 1.42 |
AT3G12580.1
|
heat shock protein 70 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G16750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.6 | 8.0 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 6.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 6.1 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 4.6 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.2 | 3.9 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 3.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 3.7 | GO:0006032 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.5 | 3.5 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.2 | 3.0 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 36.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 16.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 10.2 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 6.4 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 5.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 5.1 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 4.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.3 | GO:0009523 | photosystem II(GO:0009523) |
| 0.0 | 2.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 1.7 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 8.1 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 6.5 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 6.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 4.8 | GO:0016209 | antioxidant activity(GO:0016209) |
| 0.5 | 4.4 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.3 | 3.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.3 | 3.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 3.3 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
| 0.2 | 3.0 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 7.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.0 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.2 | 0.7 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
| 0.1 | 0.5 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.0 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.7 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.5 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.2 | 0.5 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |