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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G12870

Z-value: 0.50

Transcription factors associated with AT5G12870

Gene Symbol Gene ID Gene Info
AT5G12870 myb domain protein 46

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB46arTal_v1_Chr5_-_4065075_40650750.175.5e-01Click!

Activity profile of AT5G12870 motif

Sorted Z-values of AT5G12870 motif

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr2_-_15560755_15560755 0.82 AT2G37040.1
PHE ammonia lyase 1
arTal_v1_Chr1_-_28302728_28302728 0.80 AT1G75410.3
AT1G75410.1
BEL1-like homeodomain 3
arTal_v1_Chr1_-_28302571_28302571 0.70 AT1G75410.2
BEL1-like homeodomain 3
arTal_v1_Chr5_+_9033204_9033204 0.66 AT5G25890.1
indole-3-acetic acid inducible 28
arTal_v1_Chr4_+_16310768_16310815 0.63 AT4G34050.1
AT4G34050.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr4_+_16310409_16310409 0.60 AT4G34050.3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr3_+_16466144_16466144 0.46 AT3G45010.1
serine carboxypeptidase-like 48
arTal_v1_Chr3_+_6744377_6744377 0.45 AT3G19450.1
GroES-like zinc-binding alcohol dehydrogenase family protein
arTal_v1_Chr1_+_23337167_23337167 0.43 AT1G62990.1
homeobox knotted-like protein
arTal_v1_Chr1_-_6812757_6812757 0.42 AT1G19700.3
AT1G19700.1
BEL1-like homeodomain 10
arTal_v1_Chr4_-_16533362_16533362 0.41 AT4G34610.1
AT4G34610.3
BEL1-like homeodomain 6
arTal_v1_Chr4_-_16533001_16533034 0.40 AT4G34610.2
AT4G34610.4
BEL1-like homeodomain 6
arTal_v1_Chr1_-_6811994_6811994 0.38 AT1G19700.2
BEL1-like homeodomain 10
arTal_v1_Chr4_+_15003146_15003146 0.34 AT4G30810.1
serine carboxypeptidase-like 29
arTal_v1_Chr1_-_6812523_6812523 0.32 AT1G19700.4
BEL1-like homeodomain 10
arTal_v1_Chr4_-_10316886_10316886 0.31 AT4G18780.1
cellulose synthase family protein
arTal_v1_Chr4_-_16662549_16662549 0.29 AT4G34990.1
myb domain protein 32
arTal_v1_Chr1_-_6813063_6813063 0.27 AT1G19700.5
BEL1-like homeodomain 10
arTal_v1_Chr4_+_17369179_17369320 0.24 AT4G36870.3
AT4G36870.1
AT4G36870.4
BEL1-like homeodomain 2
arTal_v1_Chr5_-_5741500_5741500 0.24 AT5G17420.1
Cellulose synthase family protein
arTal_v1_Chr2_+_12023940_12023940 0.20 AT2G28200.1
C2H2-type zinc finger family protein
arTal_v1_Chr4_+_18053360_18053360 0.20 AT4G38620.1
myb domain protein 4
arTal_v1_Chr4_+_6883513_6883513 0.19 AT4G11310.1
Papain family cysteine protease
arTal_v1_Chr1_-_24171502_24171635 0.18 AT1G65060.2
AT1G65060.1
4-coumarate:CoA ligase 3
arTal_v1_Chr2_-_7256831_7256831 0.15 AT2G16720.1
myb domain protein 7
arTal_v1_Chr1_+_6177481_6177481 0.15 AT1G17950.1
myb domain protein 52
arTal_v1_Chr5_+_17714390_17714390 0.13 AT5G44030.2
AT5G44030.1
cellulose synthase A4
arTal_v1_Chr1_+_29786495_29786495 0.10 AT1G79180.2
myb domain protein 63
arTal_v1_Chr4_+_17368915_17368915 0.09 AT4G36870.2
BEL1-like homeodomain 2
arTal_v1_Chr1_+_29786257_29786257 0.07 AT1G79180.1
myb domain protein 63
arTal_v1_Chr1_-_5631088_5631088 0.06 AT1G16490.1
myb domain protein 58

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G12870

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.2 0.8 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.1 0.3 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.2 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.3 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 1.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 0.4 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.2 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 4.4 GO:0000790 nuclear chromatin(GO:0000790)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.2 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.2 0.8 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 4.6 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.5 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 0.7 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.8 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 0.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)