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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G09600

Z-value: 1.47

Transcription factors associated with AT3G09600

Gene Symbol Gene ID Gene Info
AT3G09600 Homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
RVE8arTal_v1_Chr3_+_2946239_29463820.602.3e-02Click!

Activity profile of AT3G09600 motif

Sorted Z-values of AT3G09600 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_17710433 3.01 AT2G42530.1
cold regulated 15b
Chr2_+_538250 2.45 AT2G02120.1
Scorpion toxin-like knottin superfamily protein
Chr3_-_2699257 2.14 AT3G08860.2
PYRIMIDINE 4
Chr5_+_21240717 2.12 AT5G52310.1
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Chr3_-_2699420 2.09 AT3G08860.1
PYRIMIDINE 4
Chr5_-_7828724 1.98 AT5G23240.1
DNAJ heat shock N-terminal domain-containing protein
Chr5_+_20151163 1.91 AT5G49640.1
hypothetical protein
Chr5_-_17199793 1.83 AT5G42900.1
AT5G42900.3
AT5G42900.2
cold regulated protein 27
Chr2_+_18346306 1.74 AT2G44460.1
beta glucosidase 28
Chr2_+_18347765 1.72 AT2G44460.2
beta glucosidase 28
Chr2_+_9126263 1.71 AT2G21320.1
B-box zinc finger family protein
Chr3_+_22216540 1.71 AT3G60140.2
AT3G60140.1
Glycosyl hydrolase superfamily protein
Chr2_+_2015624 1.70 AT2G05510.1
AT2G05510.3
AT2G05510.4
AT2G05510.2
AT2G05510.6
AT2G05510.5
Glycine-rich protein family
Chr2_-_16603059 1.67 AT2G39800.2
AT2G39800.4
AT2G39800.3
delta1-pyrroline-5-carboxylate synthase 1
Chr5_-_22115539 1.62 AT5G54470.1
B-box type zinc finger family protein
Chr4_+_14954204 1.59 AT4G30650.1
Low temperature and salt responsive protein family
Chr5_-_22991530 1.58 AT5G56860.1
GATA type zinc finger transcription factor family protein
Chr3_-_17306633 1.57 AT3G46970.1
alpha-glucan phosphorylase 2
Chr5_-_19807853 1.56 AT5G48850.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_22280593 1.55 AT1G60470.1
galactinol synthase 4
Chr2_-_12415661 1.54 AT2G28900.1
outer plastid envelope protein 16-1
Chr1_+_28975255 1.54 AT1G77120.1
alcohol dehydrogenase 1
Chr2_+_12666935 1.53 AT2G29630.3
AT2G29630.2
AT2G29630.1
thiaminC
Chr5_-_5692920 1.51 AT5G17300.2
AT5G17300.1
Homeodomain-like superfamily protein
Chr2_-_18811085 1.50 AT2G45660.2
AT2G45660.1
AGAMOUS-like 20
Chr1_-_24595544 1.50 AT1G66060.1
hypothetical protein (DUF577)
Chr5_+_17526660 1.49 AT5G43630.2
AT5G43630.1
AT5G43630.3
AT5G43630.4
zinc knuckle (CCHC-type) family protein
Chr2_+_19232607 1.46 AT2G46790.3
AT2G46790.4
AT2G46790.1
AT2G46790.2
AT2G46790.5
pseudo-response regulator 9
Chr3_-_17475274 1.44 AT3G47420.3
AT3G47420.1
AT3G47420.2
putative glycerol-3-phosphate transporter 1
Chr1_-_3756998 1.42 AT1G11210.1
cotton fiber protein, putative (DUF761)
Chr2_-_16603319 1.42 AT2G39800.1
delta1-pyrroline-5-carboxylate synthase 1
Chr2_+_12667901 1.41 AT2G29630.4
thiaminC
Chr1_-_20310850 1.40 AT1G54410.1
dehydrin family protein
Chr1_-_23246949 1.36 AT1G62770.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_16074929 1.31 AT3G44450.1
hypothetical protein
Chr4_-_2429899 1.31 AT4G04770.1
ATP binding cassette protein 1
Chr4_-_7401951 1.30 AT4G12470.1
azelaic acid induced 1
Chr1_-_1337849 1.30 AT1G04770.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_14310608 1.29 AT2G33830.2
Dormancy/auxin associated family protein
Chr3_-_22915393 1.28 AT3G61890.1
homeobox 12
Chr5_-_6850237 1.28 AT5G20280.1
sucrose phosphate synthase 1F
Chr1_+_18546086 1.28 AT1G50050.2
AT1G50050.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr1_+_6763765 1.26 AT1G19530.1
AT1G19530.2
DNA polymerase epsilon catalytic subunit A
Chr2_-_14310339 1.26 AT2G33830.1
Dormancy/auxin associated family protein
Chr5_+_9261479 1.25 AT5G26570.1
AT5G26570.2
chloroplastidic phosphoglucan, water dikinase (ATGWD3)
Chr1_+_24554413 1.25 AT1G65960.4
glutamate decarboxylase 2
Chr5_-_3595003 1.24 AT5G11260.2
AT5G11260.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_-_1500100 1.24 AT4G03400.2
Auxin-responsive GH3 family protein
Chr1_-_22317070 1.22 AT1G60590.1
Pectin lyase-like superfamily protein
Chr2_-_15412064 1.22 AT2G36750.1
UDP-glucosyl transferase 73C1
Chr1_-_3590928 1.21 AT1G10760.1
AT1G10760.3
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr1_+_17847042 1.20 AT1G48300.1
diacylglycerol acyltransferase
Chr4_+_2189515 1.20 AT4G04410.1

Chr3_+_23135630 1.19 AT3G62550.1
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr1_+_24551807 1.18 AT1G65960.3
AT1G65960.1
glutamate decarboxylase 2
Chr5_+_19005547 1.18 AT5G46840.1
AT5G46840.2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_16579936 1.18 AT5G41410.1
POX (plant homeobox) family protein
Chr4_-_7406994 1.18 AT4G12480.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_16079679 1.17 AT2G38390.1
Peroxidase superfamily protein
Chr3_-_6143310 1.17 AT3G17930.1
transmembrane protein
Chr5_-_6725966 1.17 AT5G19890.1
Peroxidase superfamily protein
Chr3_-_19547171 1.16 AT3G52740.1
hypothetical protein
Chr2_-_16664431 1.15 AT2G39920.4
AT2G39920.1
AT2G39920.3
AT2G39920.2
HAD superfamily, subfamily IIIB acid phosphatase
Chr5_+_5995479 1.15 AT5G18130.2
transmembrane protein
Chr4_-_1501599 1.14 AT4G03400.1
Auxin-responsive GH3 family protein
Chr3_-_9642779 1.14 AT3G26310.1
cytochrome P450, family 71, subfamily B, polypeptide 35
Chr2_-_17202848 1.13 AT2G41250.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_28302728 1.12 AT1G75410.3
AT1G75410.1
BEL1-like homeodomain 3
Chr5_+_5995323 1.12 AT5G18130.1
transmembrane protein
Chr4_-_7316871 1.11 AT4G12320.1
cytochrome P450, family 706, subfamily A, polypeptide 6
Chr1_-_3590701 1.10 AT1G10760.2
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr5_-_21992812 1.09 AT5G54190.2
AT5G54190.1
protochlorophyllide oxidoreductase A
Chr5_-_773295 1.09 AT5G03240.2
polyubiquitin 3
Chr5_-_773513 1.08 AT5G03240.1
AT5G03240.3
polyubiquitin 3
Chr5_-_8358546 1.08 AT5G24470.1
two-component response regulator-like protein
Chr1_+_25999837 1.08 AT1G69160.1
suppressor
Chr1_-_2165261 1.08 AT1G07050.2
AT1G07050.1
CCT motif family protein
Chr3_-_22907958 1.08 AT3G61880.1
AT3G61880.2
cytochrome p450 78a9
Chr4_-_15614544 1.08 AT4G32340.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_24552003 1.07 AT1G65960.2
glutamate decarboxylase 2
Chr4_+_7304323 1.07 AT4G12290.2
Copper amine oxidase family protein
Chr4_-_12345652 1.07 AT4G23700.2
cation/H+ exchanger 17
Chr1_+_27538190 1.05 AT1G73220.1
organic cation/carnitine transporter1
Chr1_-_1248826 1.04 AT1G04570.2
AT1G04570.1
Major facilitator superfamily protein
Chr2_+_15528877 1.04 AT2G36970.1
UDP-Glycosyltransferase superfamily protein
Chr5_+_4213955 1.04 AT5G13210.1
Uncharacterized conserved protein UCP015417, vWA
Chr4_-_12346051 1.04 AT4G23700.1
cation/H+ exchanger 17
Chr2_+_1966806 1.04 AT2G05380.1
AT2G05380.2
glycine-rich protein 3 short isoform
Chr4_+_7303985 1.04 AT4G12290.1
Copper amine oxidase family protein
Chr3_-_3282131 1.03 AT3G10525.1
LOSS OF GIANT CELLS FROM ORGANS
Chr3_+_15567067 1.03 AT3G43670.1
Copper amine oxidase family protein
Chr3_-_8085669 1.03 AT3G22840.1
Chlorophyll A-B binding family protein
Chr3_+_5081780 1.03 AT3G15095.2
AT3G15095.1
AT3G15095.3
Serine/Threonine-kinase pakA-like protein
Chr5_+_451406 1.03 AT5G02240.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_13698739 1.03 AT1G36370.1
serine hydroxymethyltransferase 7
Chr5_-_10348234 1.02 AT5G28400.1
embryo defective protein
Chr5_-_14753088 1.02 AT5G37260.1
Homeodomain-like superfamily protein
Chr2_-_9056481 1.02 AT2G21130.1
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr2_+_1966610 1.02 AT2G05380.3
glycine-rich protein 3 short isoform
Chr2_+_7074353 1.02 AT2G16365.2
AT2G16365.5
AT2G16365.1
AT2G16365.3
F-box family protein
Chr5_-_9164816 1.02 AT5G26220.2
AT5G26220.1
ChaC-like family protein
Chr1_-_12224000 1.02 AT1G33720.5
AT1G33720.1
AT1G33720.3
AT1G33720.2
AT1G33720.4
cytochrome P450, family 76, subfamily C, polypeptide 6
Chr1_-_28302571 1.01 AT1G75410.2
BEL1-like homeodomain 3
Chr1_-_21635344 1.01 AT1G58320.1
PLAC8 family protein
Chr1_+_18932766 1.01 AT1G51090.1
Heavy metal transport/detoxification superfamily protein
Chr3_-_7709933 1.01 AT3G21890.1
B-box type zinc finger family protein
Chr2_-_9266393 1.01 AT2G21660.2
cold, circadian rhythm, and rna binding 2
Chr3_+_19845097 1.01 AT3G53530.2
AT3G53530.1
Chloroplast-targeted copper chaperone protein
Chr5_-_1063425 1.00 AT5G03940.1
chloroplast signal recognition particle 54 kDa subunit
Chr5_+_18444607 0.99 AT5G45510.2
AT5G45510.1
Leucine-rich repeat (LRR) family protein
Chr5_+_17968092 0.99 AT5G44572.1
transmembrane protein
Chr1_-_29323352 0.99 AT1G77990.1
STAS domain / Sulfate transporter family
Chr4_-_11313709 0.98 AT4G21215.1
AT4G21215.2
transmembrane protein
Chr1_-_11759324 0.98 AT1G32520.1
TLDc domain protein
Chr5_-_13868362 0.98 AT5G35690.1
zinc metalloproteinase-like protein
Chr3_+_1225919 0.98 AT3G04550.1
rubisco accumulation factor-like protein
Chr1_-_1969656 0.98 AT1G06460.1
alpha-crystallin domain 32.1
Chr4_-_13864327 0.97 AT4G27830.2
beta glucosidase 10
Chr2_-_9266557 0.97 AT2G21660.1
cold, circadian rhythm, and rna binding 2
Chr5_+_26688943 0.97 AT5G66820.1
transmembrane protein
Chr5_-_9011618 0.96 AT5G25840.1
DUF1677 family protein (DUF1677)
Chr1_-_6308010 0.96 AT1G18330.2
Homeodomain-like superfamily protein
Chr5_+_25040540 0.96 AT5G62360.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_-_6308243 0.96 AT1G18330.1
Homeodomain-like superfamily protein
Chr4_-_7553332 0.96 AT4G12910.2
AT4G12910.1
serine carboxypeptidase-like 20
Chr1_+_23888832 0.95 AT1G64370.1
filaggrin-like protein
Chr1_+_25746697 0.95 AT1G68570.1
Major facilitator superfamily protein
Chr4_-_13864659 0.95 AT4G27830.1
beta glucosidase 10
Chr5_+_23167774 0.95 AT5G57180.1
AT5G57180.2
AT5G57180.4
AT5G57180.3
chloroplast import apparatus 2
Chr1_+_24901882 0.95 AT1G66760.2
AT1G66760.1
AT1G66760.4
AT1G66760.3
MATE efflux family protein
Chr1_-_30142697 0.94 AT1G80130.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_8139114 0.94 AT1G22990.1
AT1G22990.2
Heavy metal transport/detoxification superfamily protein
Chr4_+_8804070 0.93 AT4G15393.2
AT4G15393.3
AT4G15393.1
cytochrome P450, family 702, subfamily A, polypeptide 5
Chr5_+_23225951 0.93 AT5G57340.2
AT5G57340.1
ras guanine nucleotide exchange factor Q-like protein
Chr5_-_6976036 0.93 AT5G20630.1
germin 3
Chr4_+_12456342 0.92 AT4G23990.1
cellulose synthase like G3
Chr5_+_24279897 0.92 AT5G60360.3
AT5G60360.2
aleurain-like protease
Chr4_-_5932475 0.92 AT4G09350.1
Chaperone DnaJ-domain superfamily protein
Chr1_-_26540818 0.92 AT1G70420.1
DNA ligase-like protein, putative (DUF1645)
Chr1_+_25746994 0.91 AT1G68570.2
Major facilitator superfamily protein
Chr3_-_19353596 0.91 AT3G52180.3
AT3G52180.2
AT3G52180.1
dual specificity protein phosphatase (DsPTP1) family protein
Chr2_-_13101371 0.91 AT2G30750.1
cytochrome P450 family 71 polypeptide
Chr1_+_18770937 0.91 AT1G50660.1
actin cytoskeleton-regulatory complex pan-like protein
Chr3_-_23195917 0.91 AT3G62700.1
multidrug resistance-associated protein 10
Chr3_-_5358427 0.91 AT3G15840.4
AT3G15840.2
AT3G15840.3
AT3G15840.5
AT3G15840.1
post-illumination chlorophyll fluorescence increase
Chr3_-_2890520 0.91 AT3G09390.2
AT3G09390.1
metallothionein 2A
Chr3_-_1774589 0.90 AT3G05936.1
AT3G05936.2
hypothetical protein
Chr4_+_14348637 0.90 AT4G29110.1
cotton fiber protein
Chr5_+_17630426 0.90 AT5G43860.1
chlorophyllase 2
Chr4_+_12457466 0.90 AT4G23990.2
cellulose synthase like G3
Chr2_+_9579842 0.89 AT2G22540.3
AT2G22540.2
K-box region and MADS-box transcription factor family protein
Chr5_-_2697724 0.89 AT5G08380.2
AT5G08380.1
alpha-galactosidase 1
Chr1_+_4544889 0.89 AT1G13270.1
AT1G13270.2
methionine aminopeptidase 1B
Chr5_-_25898171 0.89 AT5G64770.1
root meristem growth factor
Chr5_+_21673432 0.89 AT5G53420.4
AT5G53420.1
AT5G53420.5
AT5G53420.3
CCT motif family protein
Chr1_+_25508639 0.89 AT1G68050.1
flavin-binding, kelch repeat, f box 1
Chr1_+_26703966 0.88 AT1G70810.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_-_21626402 0.88 AT1G58290.1
Glutamyl-tRNA reductase family protein
Chr5_-_4933620 0.88 AT5G15190.2
AT5G15190.1
hypothetical protein
Chr3_-_2585851 0.88 AT3G08510.4
AT3G08510.3
AT3G08510.2
AT3G08510.1
phospholipase C 2
Chr5_-_6993948 0.88 AT5G20670.1
DUF1677 family protein (DUF1677)
Chr2_-_19166949 0.88 AT2G46680.2
AT2G46680.1
homeobox 7
Chr2_-_10113005 0.88 AT2G23760.3
AT2G23760.4
AT2G23760.1
BEL1-like homeodomain 4
Chr4_-_2118617 0.87 AT4G04330.1
Chaperonin-like RbcX protein
Chr1_-_2163387 0.87 AT1G07040.1
plant/protein
Chr5_+_23940745 0.87 AT5G59350.1
AT5G59350.2
AT5G59350.3
transmembrane protein
Chr5_-_24083528 0.87 AT5G59780.2
AT5G59780.1
AT5G59780.3
myb domain protein 59
Chr5_+_24279660 0.87 AT5G60360.1
aleurain-like protease
Chr1_-_23716170 0.87 AT1G63880.2
AT1G63880.1
Disease resistance protein (TIR-NBS-LRR class) family
Chr4_-_16116383 0.87 AT4G33500.1
Protein phosphatase 2C family protein
Chr5_-_8659352 0.87 AT5G25110.1
CBL-interacting protein kinase 25
Chr3_-_17658353 0.86 AT3G47860.1
chloroplastic lipocalin
Chr3_+_9352444 0.86 AT3G25690.4
AT3G25690.5
AT3G25690.6
Hydroxyproline-rich glycoprotein family protein
Chr5_+_25400317 0.86 AT5G63420.1
RNA-metabolising metallo-beta-lactamase family protein
Chr3_-_2569700 0.86 AT3G08040.2
AT3G08040.1
MATE efflux family protein
Chr1_+_26452847 0.86 AT1G70250.1
receptor serine/threonine kinase
Chr3_+_10125659 0.86 AT3G27350.3
AT3G27350.2
transcriptional regulator ATRX-like protein
Chr1_+_8117732 0.85 AT1G22930.2
T-complex protein 11
Chr2_+_7074652 0.85 AT2G16365.6
F-box family protein
Chr3_+_2946239 0.85 AT3G09600.1
AT3G09600.2
AT3G09600.4
AT3G09600.3
AT3G09600.7
AT3G09600.6
AT3G09600.5
AT3G09600.8
AT3G09600.9
Homeodomain-like superfamily protein
Chr5_+_13689817 0.85 AT5G35490.1
mto 1 responding up 1
Chr5_+_579744 0.85 AT5G02580.1
AT5G02580.3
AT5G02580.2
argininosuccinate lyase
Chr4_+_886580 0.85 AT4G02020.1
AT4G02020.2
AT4G02020.4
AT4G02020.3
SET domain-containing protein
Chr5_-_2062027 0.85 AT5G06690.3
AT5G06690.2
AT5G06690.1
AT5G06690.4
WCRKC thioredoxin 1
Chr1_-_1286619 0.85 AT1G04620.1
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Chr4_-_5456100 0.85 AT4G08570.1
Heavy metal transport/detoxification superfamily protein
Chr1_-_26800483 0.85 AT1G71040.1
Cupredoxin superfamily protein
Chr3_-_22102164 0.85 AT3G59820.4
AT3G59820.2
AT3G59820.1
AT3G59820.3
LETM1-like protein
Chr1_-_26434538 0.85 AT1G70200.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_-_7686873 0.85 AT4G13250.2
AT4G13250.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_-_15783480 0.84 AT2G37630.1
myb-like HTH transcriptional regulator family protein
Chr4_+_9028262 0.84 AT4G15910.1
drought-induced 21
Chr3_+_1086516 0.84 AT3G04140.1
Ankyrin repeat family protein
Chr1_-_7086873 0.84 AT1G20440.1
cold-regulated 47
Chr4_-_1197630 0.84 AT4G02710.1
Kinase interacting (KIP1-like) family protein
Chr5_+_17564697 0.84 AT5G43740.2
AT5G43740.1
Disease resistance protein (CC-NBS-LRR class) family
Chr3_-_9634470 0.84 AT3G26290.1
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr2_-_521707 0.83 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
indeterminate(ID)-domain 4
Chr3_-_3608092 0.83 AT3G11450.1
DnaJ and Myb-like DNA-binding domain-containing protein
Chr1_+_2238017 0.83 AT1G07280.1
AT1G07280.2
AT1G07280.4
AT1G07280.3
Tetratricopeptide repeat (TPR)-like superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G09600

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 2.9 GO:0010266 response to vitamin B1(GO:0010266)
0.6 3.6 GO:0009413 response to flooding(GO:0009413)
0.5 2.1 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.5 1.1 GO:0033306 phytol metabolic process(GO:0033306)
0.5 3.2 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.5 1.0 GO:0072708 response to sorbitol(GO:0072708)
0.5 1.5 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.5 1.5 GO:0010028 xanthophyll cycle(GO:0010028)
0.5 1.4 GO:0018119 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.4 5.8 GO:0009608 response to symbiont(GO:0009608)
0.4 0.9 GO:0035865 cellular response to potassium ion(GO:0035865)
0.4 1.1 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.4 0.4 GO:0040014 regulation of multicellular organism growth(GO:0040014)
0.3 1.7 GO:0005980 glycogen catabolic process(GO:0005980)
0.3 0.3 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.3 4.4 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.3 0.3 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.3 1.9 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.3 1.5 GO:0019323 pentose catabolic process(GO:0019323)
0.3 1.2 GO:0097298 regulation of nucleus size(GO:0097298)
0.3 1.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.3 0.9 GO:0051194 positive regulation of cofactor metabolic process(GO:0051194) positive regulation of tetrapyrrole metabolic process(GO:1901403)
0.3 0.9 GO:0071485 cellular response to absence of light(GO:0071485)
0.3 0.8 GO:0015696 ammonium transport(GO:0015696)
0.3 1.1 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.3 0.8 GO:0035461 thiamine pyrophosphate transport(GO:0030974) vitamin transmembrane transport(GO:0035461) azole transport(GO:0045117)
0.3 2.2 GO:0044375 regulation of peroxisome size(GO:0044375)
0.3 0.8 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
0.3 3.6 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.3 0.8 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.3 2.7 GO:0010117 photoprotection(GO:0010117)
0.3 0.5 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.3 0.8 GO:0010184 cytokinin transport(GO:0010184)
0.3 2.1 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.3 0.8 GO:0032025 response to cobalt ion(GO:0032025)
0.3 1.3 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.3 0.8 GO:0051341 regulation of oxidoreductase activity(GO:0051341)
0.2 2.5 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.2 0.7 GO:0042766 nucleosome mobilization(GO:0042766)
0.2 1.0 GO:0071836 nectar secretion(GO:0071836)
0.2 1.0 GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion(GO:0006296)
0.2 0.7 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.2 1.2 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.2 0.7 GO:2000072 regulation of defense response to fungus, incompatible interaction(GO:2000072)
0.2 0.2 GO:0090549 response to carbon starvation(GO:0090549)
0.2 1.6 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.2 0.7 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
0.2 1.1 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.2 1.3 GO:0051098 regulation of binding(GO:0051098)
0.2 1.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.2 1.1 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.2 0.4 GO:0071217 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.2 0.8 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.2 2.1 GO:0050879 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.2 1.0 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.2 1.0 GO:0000729 meiotic DNA double-strand break processing(GO:0000706) DNA double-strand break processing(GO:0000729)
0.2 1.4 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.2 1.4 GO:0090059 protoxylem development(GO:0090059)
0.2 0.6 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.2 2.0 GO:0009942 longitudinal axis specification(GO:0009942)
0.2 0.4 GO:1902066 regulation of cell wall pectin metabolic process(GO:1902066)
0.2 4.1 GO:0005983 starch catabolic process(GO:0005983)
0.2 1.7 GO:0061085 regulation of histone H3-K27 methylation(GO:0061085)
0.2 0.6 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.2 0.6 GO:0071569 protein ufmylation(GO:0071569)
0.2 0.8 GO:0034720 histone H3-K4 demethylation(GO:0034720)
0.2 0.8 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.2 0.9 GO:0072718 response to cisplatin(GO:0072718)
0.2 2.8 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.2 2.9 GO:0006538 glutamate catabolic process(GO:0006538)
0.2 1.3 GO:1903651 positive regulation of cytoplasmic transport(GO:1903651)
0.2 2.5 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.2 1.1 GO:0048439 flower morphogenesis(GO:0048439)
0.2 0.7 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.2 0.5 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.2 0.5 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.2 0.5 GO:0080058 protein deglutathionylation(GO:0080058)
0.2 0.7 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.2 1.1 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 0.9 GO:0008608 attachment of spindle microtubules to kinetochore(GO:0008608)
0.2 0.7 GO:0046146 tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146)
0.2 1.8 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.2 0.9 GO:0009558 embryo sac cellularization(GO:0009558)
0.2 0.9 GO:0033683 nucleotide-excision repair, DNA incision(GO:0033683)
0.2 1.2 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.2 0.8 GO:0001578 microtubule bundle formation(GO:0001578)
0.2 0.7 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.2 1.7 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 0.8 GO:0035627 ceramide transport(GO:0035627)
0.2 0.7 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.2 0.5 GO:0002100 tRNA wobble adenosine to inosine editing(GO:0002100)
0.2 1.0 GO:0010338 leaf formation(GO:0010338)
0.2 0.8 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 0.5 GO:0009590 detection of gravity(GO:0009590)
0.2 0.8 GO:0030242 pexophagy(GO:0030242)
0.2 0.3 GO:0019740 regulation of nitrogen utilization(GO:0006808) nitrogen utilization(GO:0019740)
0.2 0.8 GO:0016559 peroxisome fission(GO:0016559)
0.2 0.5 GO:0051639 actin filament network formation(GO:0051639)
0.2 0.9 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601)
0.2 0.9 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.2 0.3 GO:0000492 box C/D snoRNP assembly(GO:0000492)
0.2 1.2 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.3 GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of mRNA catabolic process(GO:0061013) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.1 1.5 GO:0010206 photosystem II repair(GO:0010206)
0.1 0.4 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 3.1 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 0.1 GO:1901881 positive regulation of protein depolymerization(GO:1901881)
0.1 0.3 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.1 0.6 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.1 1.6 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.1 0.4 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1 1.0 GO:0006565 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.1 2.0 GO:0031053 primary miRNA processing(GO:0031053)
0.1 0.5 GO:0019499 cyanide metabolic process(GO:0019499)
0.1 0.4 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.1 0.7 GO:0051318 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 1.4 GO:0042814 monopolar cell growth(GO:0042814)
0.1 1.7 GO:0010076 maintenance of floral meristem identity(GO:0010076)
0.1 0.5 GO:1901334 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.1 0.5 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.1 0.5 GO:0006527 arginine catabolic process(GO:0006527)
0.1 0.4 GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process(GO:1990116)
0.1 0.3 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.1 0.6 GO:0080121 AMP transport(GO:0080121)
0.1 0.1 GO:0050891 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.1 0.4 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.1 0.5 GO:0007063 regulation of sister chromatid cohesion(GO:0007063)
0.1 0.4 GO:0009830 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.1 0.7 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.1 0.5 GO:0009727 detection of ethylene stimulus(GO:0009727)
0.1 0.2 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.1 5.3 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.1 0.2 GO:1901672 positive regulation of systemic acquired resistance(GO:1901672)
0.1 0.8 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.1 0.7 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.1 0.6 GO:0010452 histone H3-K36 methylation(GO:0010452)
0.1 1.2 GO:0080110 sporopollenin biosynthetic process(GO:0080110)
0.1 0.5 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.1 0.7 GO:0006624 vacuolar protein processing(GO:0006624)
0.1 0.3 GO:1901656 glycoside transport(GO:1901656)
0.1 1.0 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 0.3 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.1 0.4 GO:0015669 gas transport(GO:0015669)
0.1 1.1 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 0.7 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 0.5 GO:0010731 protein glutathionylation(GO:0010731)
0.1 1.1 GO:0043462 regulation of ATPase activity(GO:0043462)
0.1 6.3 GO:0009631 cold acclimation(GO:0009631)
0.1 0.4 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 0.2 GO:0009662 etioplast organization(GO:0009662)
0.1 1.7 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.1 0.3 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.1 0.5 GO:0010155 regulation of proton transport(GO:0010155)
0.1 0.5 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.1 0.4 GO:0030322 stabilization of membrane potential(GO:0030322)
0.1 0.7 GO:0010067 procambium histogenesis(GO:0010067)
0.1 1.9 GO:0072505 divalent inorganic anion homeostasis(GO:0072505)
0.1 2.0 GO:0034033 nucleoside bisphosphate biosynthetic process(GO:0033866) ribonucleoside bisphosphate biosynthetic process(GO:0034030) purine nucleoside bisphosphate biosynthetic process(GO:0034033)
0.1 0.5 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.1 0.2 GO:1903321 negative regulation of protein modification by small protein conjugation or removal(GO:1903321)
0.1 0.4 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.1 0.7 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.1 0.3 GO:0048872 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.1 0.3 GO:0008333 lysosomal transport(GO:0007041) endosome to lysosome transport(GO:0008333)
0.1 0.6 GO:0042360 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.1 3.1 GO:0046283 anthocyanin-containing compound metabolic process(GO:0046283)
0.1 0.9 GO:0015804 neutral amino acid transport(GO:0015804)
0.1 0.5 GO:0043473 pigmentation(GO:0043473) pigment accumulation(GO:0043476) pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 3.8 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 3.5 GO:0051667 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.1 0.3 GO:0042724 thiamine biosynthetic process(GO:0009228) thiamine-containing compound biosynthetic process(GO:0042724)
0.1 0.6 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.1 0.8 GO:0032456 endocytic recycling(GO:0032456)
0.1 0.3 GO:1902288 regulation of defense response to oomycetes(GO:1902288)
0.1 0.2 GO:0010235 guard mother cell cytokinesis(GO:0010235)
0.1 0.4 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.1 0.5 GO:0043486 histone exchange(GO:0043486)
0.1 0.7 GO:0016926 protein desumoylation(GO:0016926)
0.1 0.7 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.1 0.8 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 0.6 GO:0071333 cellular response to glucose stimulus(GO:0071333)
0.1 10.4 GO:0007623 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.1 0.6 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380) regulation of tetrapyrrole biosynthetic process(GO:1901463)
0.1 0.3 GO:0016098 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.1 0.5 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.1 0.9 GO:0042727 flavin-containing compound biosynthetic process(GO:0042727)
0.1 0.3 GO:0009234 menaquinone metabolic process(GO:0009233) menaquinone biosynthetic process(GO:0009234)
0.1 0.7 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.1 0.3 GO:0051601 exocyst localization(GO:0051601)
0.1 0.3 GO:0010107 potassium ion import(GO:0010107) positive regulation of potassium ion transport(GO:0043268) regulation of potassium ion transmembrane transport(GO:1901379) regulation of cation transmembrane transport(GO:1904062)
0.1 0.3 GO:0006751 glutathione catabolic process(GO:0006751)
0.1 0.3 GO:0009557 antipodal cell differentiation(GO:0009557)
0.1 3.9 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 0.5 GO:0016120 carotene biosynthetic process(GO:0016120)
0.1 0.8 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 3.1 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 1.0 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.5 GO:0006312 mitotic recombination(GO:0006312)
0.1 0.2 GO:0006855 drug transmembrane transport(GO:0006855)
0.1 2.1 GO:0006730 one-carbon metabolic process(GO:0006730)
0.1 0.4 GO:0018210 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.1 0.5 GO:0051125 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.1 0.2 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.1 0.4 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.1 0.2 GO:0010219 regulation of vernalization response(GO:0010219)
0.1 1.4 GO:0055075 potassium ion homeostasis(GO:0055075)
0.1 0.1 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 1.1 GO:0010540 basipetal auxin transport(GO:0010540)
0.1 0.5 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.1 0.5 GO:0007095 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.1 0.4 GO:0006552 leucine catabolic process(GO:0006552)
0.1 0.4 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.1 1.0 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 0.2 GO:0043171 peptide catabolic process(GO:0043171)
0.1 0.9 GO:0009638 phototropism(GO:0009638)
0.1 0.6 GO:0042851 alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) L-alanine metabolic process(GO:0042851) L-alanine catabolic process(GO:0042853)
0.1 0.4 GO:0008614 pyridoxine metabolic process(GO:0008614)
0.1 0.9 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.1 3.4 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.1 0.7 GO:0036065 fucosylation(GO:0036065)
0.1 0.3 GO:0016598 protein arginylation(GO:0016598)
0.1 0.8 GO:0031365 N-terminal protein amino acid modification(GO:0031365)
0.1 0.8 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.1 0.2 GO:0034059 response to anoxia(GO:0034059)
0.1 0.5 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 0.3 GO:0031538 negative regulation of anthocyanin metabolic process(GO:0031538)
0.1 0.5 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.1 0.5 GO:0060866 leaf abscission(GO:0060866)
0.1 0.1 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.1 0.3 GO:0007266 Rho protein signal transduction(GO:0007266)
0.1 1.4 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.1 0.5 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.2 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.1 2.5 GO:0072666 protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666)
0.1 0.3 GO:0090436 leaf pavement cell development(GO:0090436)
0.1 0.5 GO:0016577 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone H3-K9 demethylation(GO:0033169) histone lysine demethylation(GO:0070076)
0.1 0.1 GO:0090547 response to low humidity(GO:0090547)
0.1 1.8 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.1 0.5 GO:0016122 xanthophyll metabolic process(GO:0016122)
0.1 0.4 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.1 3.9 GO:0010224 response to UV-B(GO:0010224)
0.1 0.8 GO:0051026 chiasma assembly(GO:0051026)
0.1 0.9 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.1 0.8 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.1 0.3 GO:0001113 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.1 0.3 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.1 0.6 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.1 0.1 GO:0043157 response to cation stress(GO:0043157)
0.1 0.2 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 0.1 GO:0080183 response to photooxidative stress(GO:0080183)
0.1 1.1 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 0.1 GO:0034502 protein localization to chromosome(GO:0034502)
0.1 0.3 GO:0007035 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.1 0.7 GO:0006526 arginine biosynthetic process(GO:0006526)
0.1 0.2 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.1 0.4 GO:0006021 inositol biosynthetic process(GO:0006021)
0.1 0.8 GO:0071514 regulation of gene expression by genetic imprinting(GO:0006349) genetic imprinting(GO:0071514)
0.1 0.3 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 1.3 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.1 0.2 GO:0034058 endosomal vesicle fusion(GO:0034058)
0.1 0.8 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.1 1.1 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.1 0.5 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.1 0.4 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.1 0.6 GO:0010375 stomatal complex patterning(GO:0010375)
0.1 0.9 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.1 0.3 GO:0048446 petal morphogenesis(GO:0048446)
0.1 0.1 GO:0031297 replication fork processing(GO:0031297) replication fork protection(GO:0048478)
0.1 1.1 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.3 GO:0000212 meiotic spindle organization(GO:0000212)
0.1 0.2 GO:0080119 ER body organization(GO:0080119)
0.1 0.7 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.1 0.7 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.1 0.7 GO:0019685 photosynthesis, dark reaction(GO:0019685)
0.1 0.4 GO:0043967 histone H4 acetylation(GO:0043967)
0.1 0.2 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.1 0.4 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.1 1.0 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.5 GO:1990069 stomatal opening(GO:1990069)
0.1 2.2 GO:0010286 heat acclimation(GO:0010286)
0.1 0.2 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.1 0.2 GO:0032418 lysosome localization(GO:0032418)
0.1 0.1 GO:0015755 hexose transport(GO:0008645) fructose transport(GO:0015755)
0.1 0.4 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 0.5 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.1 0.6 GO:0040020 regulation of meiotic nuclear division(GO:0040020)
0.1 0.1 GO:0010948 negative regulation of cell cycle process(GO:0010948)
0.1 0.2 GO:0035494 SNARE complex disassembly(GO:0035494)
0.1 1.0 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.1 2.2 GO:0015994 chlorophyll metabolic process(GO:0015994)
0.1 0.3 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.1 0.9 GO:0007062 sister chromatid cohesion(GO:0007062)
0.1 1.6 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 1.3 GO:0030042 actin filament depolymerization(GO:0030042)
0.0 0.3 GO:0006168 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.0 1.0 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.3 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.4 GO:0007143 female meiotic division(GO:0007143)
0.0 0.9 GO:0010109 regulation of photosynthesis(GO:0010109)
0.0 1.0 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.0 0.2 GO:0019563 alditol catabolic process(GO:0019405) glycerol catabolic process(GO:0019563)
0.0 0.2 GO:0015720 allantoin transport(GO:0015720)
0.0 2.2 GO:0006972 hyperosmotic response(GO:0006972)
0.0 2.3 GO:0061077 chaperone-mediated protein folding(GO:0061077)
0.0 1.6 GO:0006813 potassium ion transport(GO:0006813)
0.0 0.1 GO:0043649 dicarboxylic acid catabolic process(GO:0043649)
0.0 0.3 GO:0000731 DNA synthesis involved in DNA repair(GO:0000731)
0.0 0.4 GO:0046294 formaldehyde metabolic process(GO:0046292) formaldehyde catabolic process(GO:0046294)
0.0 0.4 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.1 GO:0071763 nuclear membrane organization(GO:0071763)
0.0 0.4 GO:1902645 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 0.0 GO:0009120 deoxyribonucleoside metabolic process(GO:0009120) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.0 0.1 GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000447)
0.0 0.8 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.1 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.0 0.2 GO:0006571 tyrosine biosynthetic process(GO:0006571)
0.0 0.5 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.0 0.5 GO:0009704 de-etiolation(GO:0009704)
0.0 1.2 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.4 GO:0017157 regulation of exocytosis(GO:0017157)
0.0 0.2 GO:0010589 leaf proximal/distal pattern formation(GO:0010589) viral gene silencing in virus induced gene silencing(GO:0060145)
0.0 0.2 GO:0010587 miRNA catabolic process(GO:0010587)
0.0 0.2 GO:0009819 drought recovery(GO:0009819)
0.0 0.3 GO:0031125 rRNA 3'-end processing(GO:0031125)
0.0 0.5 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.3 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.2 GO:0035308 negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308)
0.0 0.9 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
0.0 0.2 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.7 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.0 0.1 GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.0 0.8 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.4 GO:0016108 tetraterpenoid metabolic process(GO:0016108) carotenoid metabolic process(GO:0016116)
0.0 0.1 GO:0006651 diacylglycerol biosynthetic process(GO:0006651)
0.0 0.3 GO:0009410 response to xenobiotic stimulus(GO:0009410)
0.0 0.6 GO:0009269 response to desiccation(GO:0009269)
0.0 0.2 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.2 GO:0000056 ribosomal small subunit export from nucleus(GO:0000056) protein export from nucleus(GO:0006611)
0.0 0.5 GO:0006826 iron ion transport(GO:0006826)
0.0 0.8 GO:0006338 chromatin remodeling(GO:0006338)
0.0 0.4 GO:0032544 plastid translation(GO:0032544)
0.0 0.4 GO:0010088 phloem development(GO:0010088)
0.0 0.2 GO:0006301 postreplication repair(GO:0006301) protein K63-linked ubiquitination(GO:0070534)
0.0 0.3 GO:0042659 regulation of cell fate specification(GO:0042659)
0.0 0.2 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.3 GO:0000002 mitochondrial genome maintenance(GO:0000002)
0.0 0.2 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.7 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 1.0 GO:0009911 positive regulation of flower development(GO:0009911)
0.0 0.7 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.3 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.1 GO:0046521 sphingoid catabolic process(GO:0046521)
0.0 0.3 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.5 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 0.1 GO:0032104 regulation of response to extracellular stimulus(GO:0032104) regulation of response to nutrient levels(GO:0032107)
0.0 0.5 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.4 GO:0050821 protein stabilization(GO:0050821)
0.0 0.1 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.0 0.2 GO:0044211 CTP salvage(GO:0044211)
0.0 0.4 GO:0006384 transcription initiation from RNA polymerase III promoter(GO:0006384)
0.0 0.2 GO:0046033 AMP metabolic process(GO:0046033)
0.0 0.3 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.8 GO:0010345 suberin biosynthetic process(GO:0010345)
0.0 1.2 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 0.2 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 0.1 GO:0000076 DNA replication checkpoint(GO:0000076)
0.0 0.5 GO:0019853 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.1 GO:0055047 generative cell mitosis(GO:0055047)
0.0 0.3 GO:0046653 tetrahydrofolate metabolic process(GO:0046653)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.5 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.0 0.3 GO:0010229 inflorescence development(GO:0010229)
0.0 0.1 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.1 GO:0009560 embryo sac egg cell differentiation(GO:0009560)
0.0 0.3 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.1 GO:0043903 regulation of symbiosis, encompassing mutualism through parasitism(GO:0043903) regulation of viral process(GO:0050792)
0.0 0.2 GO:0005977 glycogen metabolic process(GO:0005977) energy reserve metabolic process(GO:0006112)
0.0 0.7 GO:0010027 plastid membrane organization(GO:0009668) thylakoid membrane organization(GO:0010027)
0.0 0.4 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.0 0.6 GO:0031124 mRNA 3'-end processing(GO:0031124)
0.0 0.1 GO:0019632 shikimate metabolic process(GO:0019632)
0.0 0.2 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.5 GO:0043068 positive regulation of programmed cell death(GO:0043068)
0.0 0.2 GO:0060966 regulation of gene silencing by RNA(GO:0060966)
0.0 0.1 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.7 GO:0009411 response to UV(GO:0009411)
0.0 2.1 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.0 GO:1901562 response to paraquat(GO:1901562)
0.0 0.3 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.2 GO:0019375 galactolipid biosynthetic process(GO:0019375)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)
0.0 0.3 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 1.0 GO:0016036 cellular response to phosphate starvation(GO:0016036)
0.0 1.1 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.2 GO:0019252 starch biosynthetic process(GO:0019252)
0.0 0.2 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.2 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.1 GO:0001682 tRNA 5'-leader removal(GO:0001682)
0.0 0.1 GO:2000779 regulation of double-strand break repair(GO:2000779)
0.0 0.2 GO:0097034 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.0 0.3 GO:0071427 mRNA export from nucleus(GO:0006406) mRNA transport(GO:0051028) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427)
0.0 0.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.4 GO:0018393 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 1.1 GO:0009658 chloroplast organization(GO:0009658)
0.0 0.1 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.0 0.6 GO:0016485 protein processing(GO:0016485)
0.0 0.2 GO:0060968 regulation of gene silencing(GO:0060968)
0.0 0.4 GO:0009395 phospholipid catabolic process(GO:0009395)
0.0 0.2 GO:0043248 proteasome assembly(GO:0043248)
0.0 1.2 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.0 GO:0031503 protein complex localization(GO:0031503) cellular protein complex localization(GO:0034629)
0.0 0.2 GO:0043650 dicarboxylic acid biosynthetic process(GO:0043650)
0.0 0.1 GO:0055070 copper ion homeostasis(GO:0055070)
0.0 0.3 GO:0031348 negative regulation of defense response(GO:0031348)
0.0 0.2 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.0 0.1 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.2 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.1 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.1 GO:0034311 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.6 GO:0070585 protein localization to mitochondrion(GO:0070585) establishment of protein localization to mitochondrion(GO:0072655)
0.0 0.1 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.0 GO:0006473 protein acetylation(GO:0006473)
0.0 0.3 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.2 GO:0031163 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.8 GO:0015979 photosynthesis(GO:0015979)
0.0 0.4 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.4 GO:0006305 DNA alkylation(GO:0006305) DNA methylation(GO:0006306)
0.0 0.0 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.1 GO:1902182 shoot apical meristem development(GO:1902182) regulation of shoot apical meristem development(GO:1902183)
0.0 0.0 GO:0046417 chorismate metabolic process(GO:0046417)
0.0 0.1 GO:0080093 regulation of photorespiration(GO:0080093)
0.0 0.1 GO:0006968 cellular defense response(GO:0006968)
0.0 0.1 GO:0002683 negative regulation of immune system process(GO:0002683) negative regulation of immune response(GO:0050777)
0.0 0.1 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.0 0.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.0 GO:2000904 regulation of starch metabolic process(GO:2000904)
0.0 0.2 GO:1900424 regulation of defense response to bacterium(GO:1900424)
0.0 0.3 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.5 GO:0030162 regulation of proteolysis(GO:0030162)
0.0 0.6 GO:0042273 ribosomal large subunit biogenesis(GO:0042273)
0.0 0.3 GO:0006897 endocytosis(GO:0006897)
0.0 0.5 GO:0055046 microgametogenesis(GO:0055046)
0.0 0.1 GO:0010584 pollen exine formation(GO:0010584)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.4 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.3 1.2 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.3 1.0 GO:0009509 chromoplast(GO:0009509)
0.2 0.7 GO:0016328 lateral plasma membrane(GO:0016328)
0.2 0.8 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.2 1.8 GO:0010445 nuclear dicing body(GO:0010445)
0.2 0.9 GO:0001673 male germ cell nucleus(GO:0001673)
0.2 0.5 GO:0005652 nuclear lamina(GO:0005652)
0.2 1.6 GO:0005677 chromatin silencing complex(GO:0005677)
0.2 0.9 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.2 0.5 GO:0005712 chiasma(GO:0005712)
0.2 0.5 GO:0032432 actin filament bundle(GO:0032432)
0.2 2.3 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.1 0.6 GO:0030870 Mre11 complex(GO:0030870)
0.1 0.4 GO:0030689 Noc complex(GO:0030689)
0.1 0.3 GO:0000311 plastid large ribosomal subunit(GO:0000311)
0.1 1.6 GO:0000974 Prp19 complex(GO:0000974)
0.1 2.1 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 3.0 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.1 0.5 GO:0005942 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.1 0.5 GO:0043614 multi-eIF complex(GO:0043614)
0.1 0.4 GO:1990112 RQC complex(GO:1990112)
0.1 0.4 GO:0045495 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 6.8 GO:0009707 chloroplast outer membrane(GO:0009707)
0.1 0.6 GO:0009569 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.1 0.3 GO:0034457 Mpp10 complex(GO:0034457)
0.1 1.5 GO:0000815 ESCRT III complex(GO:0000815)
0.1 1.3 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 0.5 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.1 0.2 GO:0005846 nuclear cap binding complex(GO:0005846)
0.1 0.5 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.1 1.1 GO:0016272 prefoldin complex(GO:0016272)
0.1 0.3 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.1 2.1 GO:0000229 cytoplasmic chromosome(GO:0000229)
0.1 0.9 GO:0000124 SAGA complex(GO:0000124)
0.1 1.1 GO:0008278 cohesin complex(GO:0008278)
0.1 13.1 GO:0000790 nuclear chromatin(GO:0000790)
0.1 0.7 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.1 0.3 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.1 1.4 GO:0048500 signal recognition particle(GO:0048500)
0.1 0.3 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.1 0.4 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.1 0.9 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.4 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 0.5 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.1 0.7 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 0.5 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 4.8 GO:0031977 thylakoid lumen(GO:0031977)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 0.8 GO:0000776 kinetochore(GO:0000776)
0.1 0.5 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778)
0.1 0.2 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.1 0.2 GO:0005674 transcription factor TFIIF complex(GO:0005674)
0.1 1.4 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.1 0.5 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.1 2.9 GO:0010319 stromule(GO:0010319)
0.1 0.6 GO:0030127 COPII vesicle coat(GO:0030127)
0.1 0.3 GO:0043078 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.1 3.6 GO:0010287 plastoglobule(GO:0010287)
0.1 1.3 GO:0031965 nuclear membrane(GO:0031965)
0.1 17.5 GO:0009534 chloroplast thylakoid(GO:0009534)
0.1 1.4 GO:0005778 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.1 0.3 GO:0090397 stigma papilla(GO:0090397)
0.1 0.1 GO:0009501 amyloplast(GO:0009501)
0.1 0.7 GO:0005771 multivesicular body(GO:0005771)
0.1 0.7 GO:0032300 mismatch repair complex(GO:0032300)
0.1 0.4 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.1 0.4 GO:0035861 site of double-strand break(GO:0035861)
0.1 0.4 GO:0030897 HOPS complex(GO:0030897)
0.1 0.5 GO:0015030 Cajal body(GO:0015030)
0.1 0.7 GO:0034399 nuclear periphery(GO:0034399)
0.1 0.4 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.1 0.4 GO:0098852 lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852)
0.1 0.5 GO:0005675 holo TFIIH complex(GO:0005675) carboxy-terminal domain protein kinase complex(GO:0032806)
0.1 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.2 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.4 GO:0000243 commitment complex(GO:0000243)
0.0 0.7 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.2 GO:0044439 microbody part(GO:0044438) peroxisomal part(GO:0044439)
0.0 0.5 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.8 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 1.1 GO:0005871 kinesin complex(GO:0005871)
0.0 0.3 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.0 2.0 GO:0010008 endosome membrane(GO:0010008)
0.0 1.7 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.0 2.7 GO:0005635 nuclear envelope(GO:0005635)
0.0 0.6 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.2 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 1.9 GO:0016592 mediator complex(GO:0016592)
0.0 0.8 GO:0005819 spindle(GO:0005819)
0.0 0.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.3 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.0 0.2 GO:0030863 cortical cytoskeleton(GO:0030863)
0.0 0.1 GO:0032153 cell division site(GO:0032153)
0.0 0.9 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 1.4 GO:0005770 late endosome(GO:0005770)
0.0 0.1 GO:0097361 CIA complex(GO:0097361)
0.0 0.4 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.5 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.0 0.3 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 1.1 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.0 18.3 GO:0009570 chloroplast stroma(GO:0009570)
0.0 2.6 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.2 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 0.2 GO:0034515 proteasome storage granule(GO:0034515)
0.0 0.3 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.9 GO:0016591 DNA-directed RNA polymerase II, holoenzyme(GO:0016591)
0.0 1.0 GO:0009504 cell plate(GO:0009504)
0.0 0.6 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.3 GO:0000445 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)
0.0 0.1 GO:0005828 kinetochore microtubule(GO:0005828)
0.0 0.9 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.4 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.5 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.0 0.8 GO:0000793 condensed chromosome(GO:0000793)
0.0 0.4 GO:0000786 nucleosome(GO:0000786) DNA packaging complex(GO:0044815)
0.0 0.2 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.0 0.1 GO:0009513 etioplast(GO:0009513)
0.0 0.3 GO:0010168 ER body(GO:0010168)
0.0 0.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.2 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.2 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.5 GO:0042651 thylakoid membrane(GO:0042651)
0.0 0.1 GO:0034518 mRNA cap binding complex(GO:0005845) RNA cap binding complex(GO:0034518)
0.0 0.1 GO:0035102 PRC1 complex(GO:0035102)
0.0 1.8 GO:0016604 nuclear body(GO:0016604)
0.0 0.2 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.1 GO:0034657 GID complex(GO:0034657)
0.0 0.3 GO:0045257 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 0.1 GO:0030141 secretory granule(GO:0030141)
0.0 0.3 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 0.3 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.1 GO:0042721 mitochondrial inner membrane protein insertion complex(GO:0042721)
0.0 0.2 GO:0030686 90S preribosome(GO:0030686)
0.0 4.5 GO:0005777 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 0.7 GO:0031969 chloroplast membrane(GO:0031969)
0.0 1.5 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0009574 preprophase band(GO:0009574)
0.0 0.5 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.3 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.1 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.8 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 0.9 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.7 GO:0000785 chromatin(GO:0000785)
0.0 2.1 GO:0009526 plastid envelope(GO:0009526)
0.0 37.2 GO:0005829 cytosol(GO:0005829)
0.0 0.0 GO:0070461 SAGA-type complex(GO:0070461)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.1 GO:0004350 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.7 4.8 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.6 1.8 GO:0051777 ent-kaurenoate oxidase activity(GO:0051777)
0.6 1.7 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.6 2.3 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.5 1.6 GO:0046422 violaxanthin de-epoxidase activity(GO:0046422)
0.5 2.8 GO:0019144 ADP-sugar diphosphatase activity(GO:0019144) ADP-ribose pyrophosphohydrolase activity(GO:0080041)
0.5 1.4 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.4 1.8 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.4 1.3 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.4 1.2 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.4 1.6 GO:0052595 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.4 4.2 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.4 1.5 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.3 1.7 GO:0008184 glycogen phosphorylase activity(GO:0008184)
0.3 1.7 GO:0030371 translation repressor activity(GO:0030371)
0.3 0.9 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.3 1.8 GO:0030527 structural constituent of chromatin(GO:0030527)
0.3 0.9 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.3 2.8 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.3 0.8 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.3 0.8 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.3 0.8 GO:0090422 thiamine pyrophosphate transporter activity(GO:0090422)
0.3 0.8 GO:0008883 glutamyl-tRNA reductase activity(GO:0008883)
0.3 1.1 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.3 0.8 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.3 1.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.3 0.5 GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor(GO:0016726)
0.3 1.3 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.3 0.8 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.2 1.2 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.2 1.9 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.2 0.9 GO:0070138 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.2 0.9 GO:0050162 oxalate oxidase activity(GO:0050162)
0.2 0.9 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.2 1.1 GO:0000702 oxidized base lesion DNA N-glycosylase activity(GO:0000702)
0.2 1.3 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.2 0.6 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.2 0.8 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.2 0.6 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.2 1.0 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.2 0.6 GO:0070678 preprotein binding(GO:0070678)
0.2 1.8 GO:0030291 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.2 0.6 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.2 2.1 GO:2001070 starch binding(GO:2001070)
0.2 0.7 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.2 1.1 GO:0051996 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
0.2 1.1 GO:0046625 sphingolipid binding(GO:0046625) ceramide binding(GO:0097001)
0.2 0.7 GO:0003935 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.2 0.5 GO:0016262 protein N-acetylglucosaminyltransferase activity(GO:0016262)
0.2 1.2 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.2 1.1 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.2 1.1 GO:0004567 beta-mannosidase activity(GO:0004567)
0.2 0.6 GO:0032791 lead ion binding(GO:0032791)
0.2 0.6 GO:0043546 molybdopterin cofactor binding(GO:0043546)
0.1 0.4 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.1 0.4 GO:0005344 oxygen transporter activity(GO:0005344)
0.1 0.4 GO:0070336 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.1 2.2 GO:0016157 sucrose synthase activity(GO:0016157)
0.1 0.6 GO:0019156 isoamylase activity(GO:0019156)
0.1 0.4 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.1 1.0 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.1 1.3 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 3.2 GO:0016597 amino acid binding(GO:0016597)
0.1 7.2 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 0.5 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 0.8 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.5 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.1 0.4 GO:0016725 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups(GO:0016725) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.1 0.4 GO:0008428 ribonuclease inhibitor activity(GO:0008428) 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity(GO:0047443)
0.1 1.4 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.1 1.1 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.1 0.9 GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889)
0.1 0.4 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.1 0.6 GO:0015101 organic cation transmembrane transporter activity(GO:0015101) AMP transmembrane transporter activity(GO:0080122)
0.1 0.6 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.1 0.9 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.1 1.1 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 1.2 GO:0035198 miRNA binding(GO:0035198)
0.1 1.1 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.1 0.5 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 1.7 GO:0016307 phosphatidylinositol phosphate kinase activity(GO:0016307) 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.6 GO:0008251 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.1 0.6 GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity(GO:0003906)
0.1 0.4 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.1 0.8 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.1 0.7 GO:0004096 catalase activity(GO:0004096)
0.1 0.8 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 1.6 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.1 0.5 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 0.5 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.1 0.3 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.1 0.9 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.8 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 0.3 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.1 0.6 GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity(GO:0003857)
0.1 0.6 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.1 1.0 GO:0008083 growth factor activity(GO:0008083)
0.1 0.5 GO:0004594 pantothenate kinase activity(GO:0004594)
0.1 0.3 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.4 GO:0008934 inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate phosphatase activity(GO:0052834)
0.1 0.5 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.1 0.7 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.1 1.4 GO:0030674 protein binding, bridging(GO:0030674)
0.1 0.3 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.1 0.8 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1 0.6 GO:0017108 5'-flap endonuclease activity(GO:0017108) flap endonuclease activity(GO:0048256)
0.1 0.6 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.1 0.7 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 1.4 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.1 0.8 GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors(GO:0016730)
0.1 0.3 GO:0015026 coreceptor activity(GO:0015026)
0.1 2.3 GO:0031386 protein tag(GO:0031386)
0.1 0.5 GO:0019210 kinase inhibitor activity(GO:0019210)
0.1 0.6 GO:0047635 L-alanine:2-oxoglutarate aminotransferase activity(GO:0004021) alanine-oxo-acid transaminase activity(GO:0047635)
0.1 0.4 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.1 0.7 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.1 1.2 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.1 0.4 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.1 3.7 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 3.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.3 GO:0004106 chorismate mutase activity(GO:0004106)
0.1 0.5 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.1 0.3 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.6 GO:0005034 osmosensor activity(GO:0005034)
0.1 0.3 GO:0032131 alkylated DNA binding(GO:0032131)
0.1 10.6 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.1 0.9 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.1 0.4 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 0.4 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 0.2 GO:0017048 Rho GTPase binding(GO:0017048)
0.1 1.2 GO:0051117 ATPase binding(GO:0051117)
0.1 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.1 2.4 GO:0048029 monosaccharide binding(GO:0048029)
0.1 0.5 GO:0071933 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.1 0.5 GO:0080115 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.1 0.9 GO:0008312 7S RNA binding(GO:0008312)
0.1 0.4 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 1.2 GO:0019903 protein phosphatase binding(GO:0019903)
0.1 1.0 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.1 1.5 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.1 0.6 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.1 0.8 GO:0032452 histone demethylase activity(GO:0032452) histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 2.2 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.1 0.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.9 GO:0015645 fatty acid ligase activity(GO:0015645)
0.1 0.3 GO:0004057 arginyltransferase activity(GO:0004057)
0.1 0.3 GO:0070034 telomerase RNA binding(GO:0070034)
0.1 0.8 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.1 0.8 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.1 0.3 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.1 0.2 GO:0033984 indole-3-glycerol-phosphate lyase activity(GO:0033984)
0.1 0.6 GO:0000339 RNA cap binding(GO:0000339)
0.1 0.3 GO:0031409 pigment binding(GO:0031409)
0.1 0.7 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 1.2 GO:0008144 drug binding(GO:0008144)
0.1 0.6 GO:0070300 phosphatidic acid binding(GO:0070300)
0.1 0.7 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.1 0.5 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.1 0.9 GO:0016844 strictosidine synthase activity(GO:0016844)
0.1 0.3 GO:0016896 exoribonuclease activity(GO:0004532) exoribonuclease activity, producing 5'-phosphomonoesters(GO:0016896)
0.1 0.5 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.1 0.5 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.9 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.8 GO:1990939 ATP-dependent microtubule motor activity(GO:1990939)
0.1 2.5 GO:0004707 MAP kinase activity(GO:0004707)
0.1 5.0 GO:0003724 RNA helicase activity(GO:0003724)
0.1 0.2 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.1 1.4 GO:0043138 3'-5' DNA helicase activity(GO:0043138)
0.1 0.5 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.1 0.4 GO:0008022 protein C-terminus binding(GO:0008022)
0.1 0.4 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.2 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 0.2 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.1 0.1 GO:0036310 annealing helicase activity(GO:0036310)
0.1 0.5 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 0.2 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 1.8 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 0.3 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.1 0.5 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.1 1.6 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.1 0.3 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 0.2 GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514)
0.1 2.4 GO:0003713 transcription coactivator activity(GO:0003713)
0.1 0.4 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.1 0.3 GO:0010313 phytochrome binding(GO:0010313)
0.1 0.9 GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861)
0.0 0.8 GO:0008198 ferrous iron binding(GO:0008198)
0.0 2.2 GO:0030145 manganese ion binding(GO:0030145)
0.0 1.5 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.1 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.0 0.3 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.0 0.6 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044)
0.0 0.4 GO:0017025 TBP-class protein binding(GO:0017025)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 0.2 GO:0033741 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.0 0.2 GO:0004556 alpha-amylase activity(GO:0004556)
0.0 0.3 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 0.6 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 1.6 GO:0051087 chaperone binding(GO:0051087)
0.0 0.6 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.0 0.8 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 1.4 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.1 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.0 0.3 GO:0016211 glutamate-ammonia ligase activity(GO:0004356) ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880)
0.0 0.8 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 2.3 GO:0010857 calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.3 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.0 0.6 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.6 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 0.2 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.2 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.1 GO:0016842 amidine-lyase activity(GO:0016842)
0.0 0.8 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.2 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.3 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.0 0.9 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.1 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.0 0.3 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.1 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 0.2 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.0 0.4 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.2 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.3 GO:0002020 protease binding(GO:0002020)
0.0 5.7 GO:0043531 ADP binding(GO:0043531)
0.0 0.8 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.6 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.3 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.0 0.1 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0 1.4 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.0 0.3 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.0 0.2 GO:0016815 nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061)
0.0 0.3 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.4 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.0 0.3 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 0.2 GO:0005274 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.0 0.3 GO:0060590 ATPase regulator activity(GO:0060590)
0.0 0.4 GO:0052742 phosphatidylinositol kinase activity(GO:0052742)
0.0 0.3 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.0 1.0 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.0 0.3 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.1 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.0 2.2 GO:0042393 histone binding(GO:0042393)
0.0 0.8 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.0 0.3 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.1 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.0 0.2 GO:0004849 uridine kinase activity(GO:0004849)
0.0 0.4 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.0 0.1 GO:0008443 phosphofructokinase activity(GO:0008443)
0.0 0.1 GO:0004765 shikimate kinase activity(GO:0004765)
0.0 0.3 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.1 GO:0004693 cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472)
0.0 0.4 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.2 GO:0015369 calcium:cation antiporter activity(GO:0015368) calcium:proton antiporter activity(GO:0015369)
0.0 0.3 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.1 GO:0005353 fructose transmembrane transporter activity(GO:0005353)
0.0 0.2 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 2.3 GO:0051015 actin filament binding(GO:0051015)
0.0 1.3 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 0.4 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.3 GO:0031072 heat shock protein binding(GO:0031072)
0.0 0.3 GO:0004630 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.0 0.1 GO:0051723 protein methylesterase activity(GO:0051723)
0.0 1.1 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.2 GO:0050551 myrcene synthase activity(GO:0050551)
0.0 1.0 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.1 GO:0016906 sterol 3-beta-glucosyltransferase activity(GO:0016906)
0.0 0.3 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.2 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.1 GO:0004629 phospholipase C activity(GO:0004629)
0.0 0.9 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.3 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.1 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.0 0.2 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.3 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.1 GO:0015929 hexosaminidase activity(GO:0015929)
0.0 0.7 GO:0044212 regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.0 1.3 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.1 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.0 0.2 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.3 GO:0070122 isopeptidase activity(GO:0070122)
0.0 0.1 GO:0008409 5'-3' exonuclease activity(GO:0008409)
0.0 1.1 GO:0003777 microtubule motor activity(GO:0003777)
0.0 0.1 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.1 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.0 0.8 GO:0016859 cis-trans isomerase activity(GO:0016859)
0.0 1.1 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.2 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.8 GO:0019843 rRNA binding(GO:0019843)
0.0 0.9 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.1 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0017070 U6 snRNA binding(GO:0017070)
0.0 0.4 GO:0005048 signal sequence binding(GO:0005048)
0.0 1.1 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.1 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.0 0.1 GO:0004127 cytidylate kinase activity(GO:0004127)
0.0 0.8 GO:0043621 protein self-association(GO:0043621)
0.0 0.2 GO:0008417 fucosyltransferase activity(GO:0008417)
0.0 0.5 GO:0043022 ribosome binding(GO:0043022)
0.0 0.2 GO:0004866 endopeptidase inhibitor activity(GO:0004866)
0.0 0.7 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.2 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.3 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.0 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 1.0 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.2 GO:0035250 UDP-galactosyltransferase activity(GO:0035250)
0.0 0.1 GO:0072328 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.1 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.0 0.3 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.5 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.2 GO:0003684 damaged DNA binding(GO:0003684)
0.0 0.1 GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity(GO:0010309)
0.0 0.1 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.1 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 1.4 GO:0008236 serine-type peptidase activity(GO:0008236) serine hydrolase activity(GO:0017171)
0.0 0.2 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.7 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.2 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.9 GO:0003682 chromatin binding(GO:0003682)
0.0 0.1 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.1 GO:0019905 syntaxin binding(GO:0019905)
0.0 0.1 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.0 0.5 GO:0004812 aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876)
0.0 0.4 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 16.1 GO:0001071 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 0.1 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.4 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.1 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.1 GO:0008320 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.7 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.2 0.5 ST PAC1 RECEPTOR PATHWAY PAC1 Receptor Pathway
0.2 0.9 PID AP1 PATHWAY AP-1 transcription factor network
0.2 0.6 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K
0.1 0.4 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.1 0.3 ST G ALPHA I PATHWAY G alpha i Pathway
0.1 1.0 PID MTOR 4PATHWAY mTOR signaling pathway
0.1 0.4 ST INTEGRIN SIGNALING PATHWAY Integrin Signaling Pathway
0.1 0.6 PID S1P S1P1 PATHWAY S1P1 pathway
0.1 0.5 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.4 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.1 0.3 PID TAP63 PATHWAY Validated transcriptional targets of TAp63 isoforms
0.1 0.6 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.1 0.5 PID E2F PATHWAY E2F transcription factor network
0.1 0.3 PID BARD1 PATHWAY BARD1 signaling events
0.0 0.2 PID P53 DOWNSTREAM PATHWAY Direct p53 effectors
0.0 0.1 PID RAC1 PATHWAY RAC1 signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.4 1.2 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.4 1.1 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.3 1.3 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.3 1.3 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS Genes involved in Synthesis of bile acids and bile salts
0.2 0.7 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.4 REACTOME TRNA AMINOACYLATION Genes involved in tRNA Aminoacylation
0.1 0.4 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.1 0.9 REACTOME INTERFERON SIGNALING Genes involved in Interferon Signaling
0.1 0.5 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 0.6 REACTOME GLUCOSE TRANSPORT Genes involved in Glucose transport
0.1 0.2 REACTOME PKB MEDIATED EVENTS Genes involved in PKB-mediated events
0.1 0.4 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.1 0.3 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.1 0.4 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.1 0.2 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.1 0.5 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.1 0.6 REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex
0.1 0.3 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.1 0.3 REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS Genes involved in Homologous recombination repair of replication-independent double-strand breaks
0.0 0.8 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.7 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.2 REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle
0.0 0.3 REACTOME RNA POL II PRE TRANSCRIPTION EVENTS Genes involved in RNA Polymerase II Pre-transcription Events
0.0 1.0 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport
0.0 0.1 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase