A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
TBL1XR1 | hg19_v2_chr3_-_176914963_176914980 | 0.92 | 8.9e-03 | Click! |
FOXM1 | hg19_v2_chr12_-_2986107_2986258 | -0.90 | 1.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_91152303 Show fit | 5.61 |
ENST00000371804.3
|
interferon-induced protein with tetratricopeptide repeats 1 |
|
chr1_+_223354486 Show fit | 2.52 |
ENST00000446145.1
|
RP11-239E10.3 |
|
chr1_+_948803 Show fit | 2.45 |
ENST00000379389.4
|
ISG15 ubiquitin-like modifier |
|
chr1_-_27998689 Show fit | 2.34 |
ENST00000339145.4
ENST00000362020.4 ENST00000361157.6 |
interferon, alpha-inducible protein 6 |
|
chr1_+_79115503 Show fit | 2.24 |
ENST00000370747.4
ENST00000438486.1 ENST00000545124.1 |
interferon-induced protein 44 |
|
chr12_-_8693469 Show fit | 2.12 |
ENST00000545274.1
ENST00000446457.2 |
C-type lectin domain family 4, member E |
|
chr10_+_91092241 Show fit | 2.11 |
ENST00000371811.4
|
interferon-induced protein with tetratricopeptide repeats 3 |
|
chr7_+_111846643 Show fit | 2.07 |
ENST00000361822.3
|
zinc finger protein 277 |
|
chr14_+_61449197 Show fit | 2.05 |
ENST00000533744.2
|
solute carrier family 38, member 6 |
|
chr12_-_10022735 Show fit | 2.00 |
ENST00000228438.2
|
C-type lectin domain family 2, member B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.7 | GO:0045071 | negative regulation of viral genome replication(GO:0045071) |
0.2 | 5.6 | GO:0072378 | blood coagulation, fibrin clot formation(GO:0072378) |
1.3 | 5.4 | GO:0051097 | negative regulation of helicase activity(GO:0051097) |
0.4 | 5.3 | GO:0032020 | ISG15-protein conjugation(GO:0032020) |
0.5 | 4.9 | GO:2000373 | regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373) |
0.4 | 4.6 | GO:0035457 | cellular response to interferon-alpha(GO:0035457) |
0.1 | 4.6 | GO:0035735 | intraciliary transport involved in cilium morphogenesis(GO:0035735) |
0.4 | 4.5 | GO:0070212 | protein poly-ADP-ribosylation(GO:0070212) |
0.3 | 4.4 | GO:1902033 | regulation of hematopoietic stem cell proliferation(GO:1902033) |
0.1 | 4.3 | GO:0006120 | mitochondrial electron transport, NADH to ubiquinone(GO:0006120) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.9 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 7.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 4.5 | GO:0005868 | cytoplasmic dynein complex(GO:0005868) |
0.3 | 4.1 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.1 | 4.0 | GO:0000314 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
0.1 | 3.9 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
0.3 | 3.7 | GO:0030870 | Mre11 complex(GO:0030870) |
0.0 | 3.5 | GO:0012507 | ER to Golgi transport vesicle membrane(GO:0012507) |
0.0 | 3.4 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.3 | 3.3 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 8.1 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.1 | 7.0 | GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding(GO:0000979) |
0.0 | 6.7 | GO:0061659 | ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659) |
0.1 | 6.2 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.1 | 5.7 | GO:0043027 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) |
0.3 | 5.4 | GO:0017128 | phospholipid scramblase activity(GO:0017128) |
0.0 | 4.8 | GO:0008565 | protein transporter activity(GO:0008565) |
0.1 | 4.5 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.1 | 4.3 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
0.1 | 3.9 | GO:0016505 | peptidase activator activity involved in apoptotic process(GO:0016505) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 4.7 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 4.4 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.1 | 3.7 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 3.4 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 3.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.3 | 3.1 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.0 | 3.1 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.0 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.1 | 2.7 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 32.7 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.1 | 12.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 6.6 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.2 | 5.8 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.1 | 4.5 | REACTOME POST TRANSLATIONAL MODIFICATION SYNTHESIS OF GPI ANCHORED PROTEINS | Genes involved in Post-translational modification: synthesis of GPI-anchored proteins |
0.0 | 4.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 4.2 | REACTOME PHOSPHORYLATION OF THE APC C | Genes involved in Phosphorylation of the APC/C |
0.1 | 3.9 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.0 | 3.6 | REACTOME P53 DEPENDENT G1 DNA DAMAGE RESPONSE | Genes involved in p53-Dependent G1 DNA Damage Response |
0.2 | 3.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |