Results for UGA3
Z-value: 0.75
Motif logo
Transcription factors associated with UGA3
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
UGA3
|
S000002329 | Transcriptional activator for GABA-dependent induction of GABA genes |
Activity-expression correlation:
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| YFR055W Show fit | 6.92 |
Putative cystathionine beta-lyase; involved in copper ion homeostasis and sulfur metabolism; null mutant displays increased levels of spontaneous Rad52p foci; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner |
||
| YJR094W-A Show fit | 6.77 |
Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein |
||
| YLR154W-B Show fit | 6.52 |
Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand |
||
| YLR154W-A Show fit | 6.29 |
Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand |
||
| YNR001W-A Show fit | 6.21 |
Dubious open reading frame unlikely to encode a functional protein; identified by homology |
||
| YFR056C Show fit | 5.88 |
Dubious open reading frame unlikely to encode a protein based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YFR055W |
||
| YLR154C Show fit | 5.73 |
Ribonuclease H2 subunit, required for RNase H2 activity |
||
| YKL218C Show fit | 5.47 |
3-hydroxyaspartate dehydratase, deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required for survival in the presence of hydroxyaspartate |
||
| YKR092C Show fit | 5.21 |
Nucleolar, serine-rich protein with a role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140 |
||
| YDR033W Show fit | 4.43 |
Protein that localizes primarily to the plasma membrane, also found at the nuclear envelope; the authentic, non-tagged protein is detected in mitochondria in a phosphorylated state; has similarity to Hsp30p and Yro2p |
Network of associatons between targets according to the STRING database.
First level regulatory network of UGA3
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 35.4 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.8 | 13.8 | GO:0051029 | rRNA export from nucleus(GO:0006407) rRNA transport(GO:0051029) |
| 0.1 | 9.3 | GO:0006913 | nucleocytoplasmic transport(GO:0006913) nuclear transport(GO:0051169) |
| 0.9 | 8.5 | GO:0042219 | cellular modified amino acid catabolic process(GO:0042219) |
| 1.1 | 7.7 | GO:0043137 | DNA replication, removal of RNA primer(GO:0043137) |
| 2.2 | 6.6 | GO:0000098 | sulfur amino acid catabolic process(GO:0000098) |
| 1.3 | 5.1 | GO:0014070 | response to organic cyclic compound(GO:0014070) response to cycloheximide(GO:0046898) |
| 0.4 | 5.1 | GO:0006415 | translational termination(GO:0006415) |
| 0.3 | 4.9 | GO:0000028 | ribosomal small subunit assembly(GO:0000028) |
| 0.2 | 4.8 | GO:0002098 | tRNA wobble base modification(GO:0002097) tRNA wobble uridine modification(GO:0002098) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 33.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.4 | 24.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 13.8 | GO:0005933 | cellular bud(GO:0005933) |
| 0.1 | 11.3 | GO:0005730 | nucleolus(GO:0005730) |
| 2.4 | 7.1 | GO:0032299 | ribonuclease H2 complex(GO:0032299) |
| 0.1 | 5.4 | GO:0005811 | lipid particle(GO:0005811) |
| 0.3 | 4.9 | GO:0005940 | septin ring(GO:0005940) |
| 0.3 | 4.1 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 3.8 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
| 0.1 | 3.4 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 59.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 8.8 | GO:0003924 | GTPase activity(GO:0003924) |
| 1.8 | 7.1 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.2 | 7.0 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 6.0 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
| 1.4 | 5.7 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
| 0.8 | 4.8 | GO:0016408 | C-acyltransferase activity(GO:0016408) |
| 0.7 | 4.3 | GO:0016846 | carbon-sulfur lyase activity(GO:0016846) |
| 0.4 | 4.0 | GO:0005216 | ion channel activity(GO:0005216) |
| 0.3 | 4.0 | GO:0070566 | adenylyltransferase activity(GO:0070566) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.4 | 1.3 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.4 | 1.2 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.3 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.7 | PID FGF PATHWAY | FGF signaling pathway |
| 0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 9.5 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.7 | 5.4 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.2 | 1.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.2 | REACTOME INSULIN RECEPTOR SIGNALLING CASCADE | Genes involved in Insulin receptor signalling cascade |
| 0.3 | 1.1 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
| 0.2 | 1.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.4 | 0.8 | REACTOME MYD88 MAL CASCADE INITIATED ON PLASMA MEMBRANE | Genes involved in MyD88:Mal cascade initiated on plasma membrane |
| 0.3 | 0.8 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
| 0.4 | 0.7 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.3 | 0.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |