GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Zfhx3 | rn6_v1_chr19_-_42920344_42920344 | 0.39 | 4.9e-13 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_14229067 Show fit | 57.91 |
ENSRNOT00000025534
ENSRNOT00000092865 |
complement C5 |
|
chr13_+_56598957 Show fit | 55.95 |
ENSRNOT00000016944
ENSRNOT00000080335 ENSRNOT00000089913 |
coagulation factor XIII B chain |
|
chr6_+_80188943 Show fit | 55.66 |
ENSRNOT00000059335
|
melanoma inhibitory activity 2 |
|
chr6_+_127743971 Show fit | 50.30 |
ENSRNOT00000013045
|
serpin family A member 4 |
|
chr17_-_43543172 Show fit | 47.48 |
ENSRNOT00000080684
ENSRNOT00000029626 ENSRNOT00000082719 |
solute carrier family 17 member 3 |
|
chr5_+_117698764 Show fit | 43.58 |
ENSRNOT00000011486
|
angiopoietin-like 3 |
|
chr10_+_89285855 Show fit | 37.74 |
ENSRNOT00000028033
|
glucose-6-phosphatase, catalytic subunit |
|
chr20_+_30690810 Show fit | 37.64 |
ENSRNOT00000000687
|
pterin-4 alpha-carbinolamine dehydratase 1 |
|
chr1_+_88955440 Show fit | 36.05 |
ENSRNOT00000091101
|
proline dehydrogenase 2 |
|
chr14_-_19132208 Show fit | 36.04 |
ENSRNOT00000060535
|
afamin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.2 | 71.9 | GO:0015760 | hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760) |
23.5 | 70.5 | GO:0010133 | proline catabolic process to glutamate(GO:0010133) |
9.7 | 57.9 | GO:0010760 | negative regulation of macrophage chemotaxis(GO:0010760) |
0.3 | 55.9 | GO:0007596 | blood coagulation(GO:0007596) |
9.3 | 55.7 | GO:0070973 | protein localization to endoplasmic reticulum exit site(GO:0070973) |
0.2 | 50.3 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
4.3 | 47.5 | GO:0015747 | urate transport(GO:0015747) |
1.2 | 47.3 | GO:1902475 | L-alpha-amino acid transmembrane transport(GO:1902475) |
14.8 | 44.3 | GO:0010034 | response to acetate(GO:0010034) |
8.7 | 43.6 | GO:0051005 | negative regulation of lipoprotein lipase activity(GO:0051005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 157.2 | GO:0005615 | extracellular space(GO:0005615) |
0.2 | 82.5 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.6 | 76.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 66.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
8.3 | 57.9 | GO:0005579 | membrane attack complex(GO:0005579) |
2.8 | 55.7 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.3 | 36.0 | GO:0072562 | blood microparticle(GO:0072562) |
1.1 | 31.6 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
10.4 | 31.1 | GO:0044279 | other organism cell membrane(GO:0044218) other organism membrane(GO:0044279) |
0.9 | 25.5 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.4 | 71.9 | GO:0004346 | glucose-6-phosphatase activity(GO:0004346) sugar-terminal-phosphatase activity(GO:0050309) |
23.5 | 70.5 | GO:0004657 | proline dehydrogenase activity(GO:0004657) |
19.3 | 57.9 | GO:0031714 | C5a anaphylatoxin chemotactic receptor binding(GO:0031714) |
9.3 | 55.7 | GO:0042954 | lipoprotein transporter activity(GO:0042954) |
2.7 | 54.6 | GO:0034185 | apolipoprotein binding(GO:0034185) |
0.4 | 50.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
4.8 | 48.3 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
0.6 | 47.3 | GO:0015179 | L-amino acid transmembrane transporter activity(GO:0015179) |
4.8 | 43.6 | GO:0004859 | phospholipase inhibitor activity(GO:0004859) |
12.5 | 37.6 | GO:0004505 | phenylalanine 4-monooxygenase activity(GO:0004505) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 71.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 51.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
1.5 | 50.3 | ST INTERLEUKIN 4 PATHWAY | Interleukin 4 (IL-4) Pathway |
0.6 | 43.6 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
0.5 | 32.9 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.8 | 31.1 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.5 | 23.0 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 17.8 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.5 | 17.7 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.2 | 8.5 | PID BMP PATHWAY | BMP receptor signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.1 | 106.2 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
1.5 | 71.9 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
3.5 | 55.9 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
3.2 | 55.1 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.2 | 37.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
1.2 | 32.9 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
1.6 | 31.1 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
1.4 | 26.6 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.2 | 24.5 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
1.3 | 17.7 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |