GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Zbtb7a | rn6_v1_chr7_-_11444786_11444786 | 0.24 | 1.6e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_57671080 Show fit | 23.97 |
ENSRNOT00000082511
|
hypothetical protein LOC691995 |
|
chr8_-_59239954 Show fit | 21.76 |
ENSRNOT00000016104
|
acyl-CoA synthetase bubblegum family member 1 |
|
chr17_-_78962476 Show fit | 20.39 |
ENSRNOT00000030228
|
N-myristoyltransferase 2 |
|
chr1_+_211423022 Show fit | 19.56 |
ENSRNOT00000029587
|
dihydropyrimidinase-like 4 |
|
chr8_+_56179816 Show fit | 19.01 |
ENSRNOT00000059078
|
Rho GTPase activating protein 20 |
|
chr7_-_70552897 Show fit | 17.83 |
ENSRNOT00000080594
|
kinesin family member 5A |
|
chr1_+_122981755 Show fit | 17.45 |
ENSRNOT00000013468
|
necdin, MAGE family member |
|
chr16_-_20860767 Show fit | 16.09 |
ENSRNOT00000027275
ENSRNOT00000092417 |
growth differentiation factor 1 ceramide synthase 1 |
|
chr11_+_86512797 Show fit | 16.01 |
ENSRNOT00000051680
|
glycoprotein Ib platelet beta subunit |
|
chr19_+_52086325 Show fit | 15.68 |
ENSRNOT00000020341
|
N-terminal EF-hand calcium binding protein 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 27.6 | GO:0045741 | positive regulation of epidermal growth factor-activated receptor activity(GO:0045741) |
0.8 | 26.2 | GO:0007413 | axonal fasciculation(GO:0007413) |
0.8 | 24.2 | GO:0098926 | postsynaptic signal transduction(GO:0098926) |
0.2 | 22.6 | GO:0035023 | regulation of Rho protein signal transduction(GO:0035023) |
4.4 | 21.8 | GO:0001552 | ovarian follicle atresia(GO:0001552) |
6.8 | 20.4 | GO:0018201 | peptidyl-glycine modification(GO:0018201) |
0.1 | 20.0 | GO:0071805 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
0.4 | 18.0 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
5.9 | 17.8 | GO:0098971 | anterograde dendritic transport of neurotransmitter receptor complex(GO:0098971) |
5.4 | 16.1 | GO:0072720 | response to dithiothreitol(GO:0072720) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 49.4 | GO:0097440 | apical dendrite(GO:0097440) |
0.8 | 35.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 20.8 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.1 | 17.4 | GO:0005795 | Golgi stack(GO:0005795) |
0.2 | 17.2 | GO:0036126 | sperm flagellum(GO:0036126) |
0.9 | 17.1 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.2 | 15.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 14.5 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.2 | 12.9 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
1.3 | 12.7 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 37.6 | GO:0005267 | potassium channel activity(GO:0005267) |
0.1 | 35.9 | GO:0005509 | calcium ion binding(GO:0005509) |
1.2 | 25.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
0.1 | 23.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.5 | 23.5 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
2.2 | 21.8 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
1.1 | 21.8 | GO:0031005 | filamin binding(GO:0031005) |
0.5 | 21.8 | GO:0045182 | translation regulator activity(GO:0045182) |
0.1 | 20.5 | GO:0008017 | microtubule binding(GO:0008017) |
0.2 | 20.4 | GO:0016410 | N-acyltransferase activity(GO:0016410) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 20.5 | PID REELIN PATHWAY | Reelin signaling pathway |
0.5 | 20.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 14.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.5 | 12.1 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.2 | 12.1 | PID RHOA PATHWAY | RhoA signaling pathway |
0.1 | 11.2 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 10.8 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.5 | 10.0 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.1 | 9.6 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
0.2 | 8.8 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 20.4 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |
1.1 | 19.6 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.2 | 18.0 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.6 | 17.8 | REACTOME KINESINS | Genes involved in Kinesins |
0.7 | 16.1 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
1.3 | 16.0 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.3 | 15.9 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
1.1 | 15.1 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.8 | 14.3 | REACTOME RETROGRADE NEUROTROPHIN SIGNALLING | Genes involved in Retrograde neurotrophin signalling |
1.1 | 14.1 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |