GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tcf4 | rn6_v1_chr18_+_65155685_65155685 | -0.45 | 5.2e-17 | Click! |
Mesp1 | rn6_v1_chr1_-_141533908_141533908 | 0.20 | 3.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_31359699 Show fit | 99.07 |
ENSRNOT00000081280
|
cytoplasmic FMR1 interacting protein 2 |
|
chr3_-_7141522 Show fit | 67.80 |
ENSRNOT00000014572
|
carboxyl ester lipase |
|
chr2_-_105089659 Show fit | 65.57 |
ENSRNOT00000043381
|
carboxypeptidase B1 |
|
chr9_+_82053581 Show fit | 60.71 |
ENSRNOT00000086375
|
wingless-type MMTV integration site family, member 10A |
|
chr1_-_227441442 Show fit | 58.01 |
ENSRNOT00000028433
|
membrane spanning 4-domains A1 |
|
chr16_+_54765325 Show fit | 55.17 |
ENSRNOT00000065327
ENSRNOT00000086899 |
myotubularin related protein 7 |
|
chr19_-_37907714 Show fit | 53.03 |
ENSRNOT00000026361
|
chymotrypsin-like |
|
chr1_+_100199057 Show fit | 50.47 |
ENSRNOT00000025831
|
kallikrein 1 |
|
chr10_-_31419235 Show fit | 48.43 |
ENSRNOT00000059496
|
cytoplasmic FMR1 interacting protein 2 |
|
chr5_+_154522119 Show fit | 48.35 |
ENSRNOT00000072618
|
E2F transcription factor 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
18.4 | 147.4 | GO:0051388 | positive regulation of neurotrophin TRK receptor signaling pathway(GO:0051388) |
5.9 | 88.8 | GO:0048733 | sebaceous gland development(GO:0048733) |
1.4 | 85.0 | GO:0038083 | peptidyl-tyrosine autophosphorylation(GO:0038083) |
5.2 | 73.0 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.2 | 63.4 | GO:0007283 | spermatogenesis(GO:0007283) |
4.4 | 61.2 | GO:0044752 | response to human chorionic gonadotropin(GO:0044752) |
1.0 | 52.6 | GO:0002260 | lymphocyte homeostasis(GO:0002260) |
2.0 | 46.5 | GO:0030574 | collagen catabolic process(GO:0030574) |
1.6 | 45.4 | GO:1905144 | acetylcholine receptor signaling pathway(GO:0095500) signal transduction involved in cellular response to ammonium ion(GO:1903831) response to acetylcholine(GO:1905144) cellular response to acetylcholine(GO:1905145) |
0.5 | 44.4 | GO:0007586 | digestion(GO:0007586) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 135.9 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.8 | 94.1 | GO:0072562 | blood microparticle(GO:0072562) |
1.2 | 88.3 | GO:0045095 | keratin filament(GO:0045095) |
3.3 | 69.3 | GO:0005922 | connexon complex(GO:0005922) |
2.1 | 65.4 | GO:0042588 | zymogen granule(GO:0042588) |
0.5 | 57.4 | GO:0001669 | acrosomal vesicle(GO:0001669) |
0.5 | 56.6 | GO:0030139 | endocytic vesicle(GO:0030139) |
6.9 | 55.3 | GO:0042105 | alpha-beta T cell receptor complex(GO:0042105) |
0.2 | 49.9 | GO:0005813 | centrosome(GO:0005813) |
4.9 | 48.8 | GO:0045179 | apical cortex(GO:0045179) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 387.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.9 | 105.2 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
2.2 | 71.7 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
2.6 | 70.2 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
1.1 | 68.2 | GO:0019894 | kinesin binding(GO:0019894) |
22.3 | 66.8 | GO:0050253 | retinyl-palmitate esterase activity(GO:0050253) |
2.7 | 56.5 | GO:0023026 | MHC class II protein complex binding(GO:0023026) |
1.9 | 54.7 | GO:0052866 | phosphatidylinositol phosphate phosphatase activity(GO:0052866) |
0.5 | 52.7 | GO:0002020 | protease binding(GO:0002020) |
1.3 | 52.5 | GO:0005109 | frizzled binding(GO:0005109) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 188.3 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
2.2 | 146.4 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.9 | 55.8 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
1.4 | 55.3 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
3.8 | 52.6 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
2.9 | 50.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.6 | 47.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.8 | 44.9 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.8 | 40.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
3.1 | 39.7 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 108.4 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
10.2 | 91.9 | REACTOME DEFENSINS | Genes involved in Defensins |
3.8 | 69.3 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
3.3 | 59.9 | REACTOME REGULATION OF IFNG SIGNALING | Genes involved in Regulation of IFNG signaling |
1.5 | 54.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
4.8 | 53.2 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.7 | 51.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
1.4 | 50.3 | REACTOME PLATELET AGGREGATION PLUG FORMATION | Genes involved in Platelet Aggregation (Plug Formation) |
1.0 | 48.5 | REACTOME AQUAPORIN MEDIATED TRANSPORT | Genes involved in Aquaporin-mediated transport |
2.8 | 48.4 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |