GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Stat3 | rn6_v1_chr10_-_88842233_88842233 | 0.41 | 3.1e-14 | Click! |
Stat5b | rn6_v1_chr10_-_88754829_88754829 | 0.19 | 6.7e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_6970342 Show fit | 111.11 |
ENSRNOT00000061294
ENSRNOT00000048344 |
inter-alpha-trypsin inhibitor heavy chain family, member 4 |
|
chr19_-_57333433 Show fit | 70.23 |
ENSRNOT00000024917
|
angiotensinogen |
|
chr2_+_181987217 Show fit | 46.40 |
ENSRNOT00000034521
|
fibrinogen gamma chain |
|
chr10_+_65767930 Show fit | 44.52 |
ENSRNOT00000039954
|
vitronectin |
|
chr7_+_1206648 Show fit | 41.16 |
ENSRNOT00000073689
|
protein S (alpha) |
|
chr6_-_127656603 Show fit | 39.94 |
ENSRNOT00000015516
|
serpin family A member 11 |
|
chr2_+_182006242 Show fit | 39.45 |
ENSRNOT00000064091
|
fibrinogen alpha chain |
|
chrX_+_143097525 Show fit | 39.00 |
ENSRNOT00000004559
|
coagulation factor IX |
|
chrX_-_143453612 Show fit | 33.63 |
ENSRNOT00000051319
|
ATPase phospholipid transporting 11C |
|
chr4_-_17594598 Show fit | 32.61 |
ENSRNOT00000008936
|
semaphorin 3E |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.5 | 115.9 | GO:0030212 | hyaluronan metabolic process(GO:0030212) |
5.3 | 106.9 | GO:0042730 | fibrinolysis(GO:0042730) |
23.4 | 70.2 | GO:0003051 | ovarian follicle rupture(GO:0001543) angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure(GO:0001998) angiotensin-mediated drinking behavior(GO:0003051) regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331) positive regulation of gap junction assembly(GO:1903598) |
12.0 | 60.0 | GO:0043152 | induction of bacterial agglutination(GO:0043152) |
0.2 | 49.9 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
4.9 | 44.5 | GO:0061302 | smooth muscle cell-matrix adhesion(GO:0061302) |
1.2 | 39.3 | GO:0001953 | negative regulation of cell-matrix adhesion(GO:0001953) |
0.4 | 38.5 | GO:0031638 | zymogen activation(GO:0031638) |
3.7 | 33.6 | GO:0002329 | pre-B cell differentiation(GO:0002329) |
6.4 | 31.8 | GO:0046813 | receptor-mediated virion attachment to host cell(GO:0046813) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.0 | 368.8 | GO:0072562 | blood microparticle(GO:0072562) |
0.2 | 251.0 | GO:0005615 | extracellular space(GO:0005615) |
13.3 | 106.4 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.1 | 58.2 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 57.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
7.4 | 44.5 | GO:0048237 | rough endoplasmic reticulum lumen(GO:0048237) |
1.0 | 42.3 | GO:0001772 | immunological synapse(GO:0001772) |
5.6 | 33.3 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.2 | 27.7 | GO:0005913 | cell-cell adherens junction(GO:0005913) |
0.2 | 24.9 | GO:0055037 | recycling endosome(GO:0055037) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 167.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
4.0 | 111.1 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
7.0 | 70.2 | GO:0031702 | type 1 angiotensin receptor binding(GO:0031702) |
0.5 | 64.9 | GO:0030674 | protein binding, bridging(GO:0030674) |
0.5 | 58.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
2.6 | 44.8 | GO:0001848 | complement binding(GO:0001848) |
2.2 | 44.7 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
3.1 | 40.9 | GO:0030215 | semaphorin receptor binding(GO:0030215) |
0.1 | 38.3 | GO:0003924 | GTPase activity(GO:0003924) |
1.5 | 33.6 | GO:0004012 | phospholipid-translocating ATPase activity(GO:0004012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 295.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
4.3 | 134.1 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.7 | 112.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
2.4 | 70.2 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
2.4 | 36.6 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.5 | 34.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.6 | 29.6 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.8 | 29.5 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.5 | 29.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.6 | 23.9 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
9.2 | 147.5 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.5 | 65.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
1.1 | 63.5 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.9 | 44.3 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
7.2 | 43.4 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
2.3 | 40.9 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
3.1 | 39.7 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
1.4 | 37.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
1.2 | 34.6 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
2.0 | 33.3 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |