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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Sox1

Z-value: 0.90

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Transcription factors associated with Sox1

Gene Symbol Gene ID Gene Info

Activity profile of Sox1 motif

Sorted Z-values of Sox1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr1_-_81534140 49.65 ENSRNOT00000027202
Tex101
testis expressed 101
chr10_-_5533695 44.12 ENSRNOT00000051564
Rpl39l
ribosomal protein L39-like
chr2_+_138194136 39.75 ENSRNOT00000014928
RGD1307595
similar to RIKEN cDNA 1700018B24
chr18_-_41899450 39.62 ENSRNOT00000057099
RGD1561114
similar to hypothetical protein 4930474N05
chr7_+_34744483 37.96 ENSRNOT00000007465
Usp44
ubiquitin specific peptidase 44
chr7_+_34402738 36.65 ENSRNOT00000030985
Ccdc38
coiled-coil domain containing 38
chr16_+_12174370 34.45 ENSRNOT00000072045
LOC102553538
ral guanine nucleotide dissociation stimulator-like
chr16_+_12976906 33.20 ENSRNOT00000029573
LOC685463
similar to Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS)
chr12_+_45319501 33.07 ENSRNOT00000090630
ENSRNOT00000041732
RGD1561114
similar to hypothetical protein 4930474N05
chr16_-_12703961 32.53 ENSRNOT00000080905
RGD1562508
similar to hypothetical protein 4930474N05
chr16_-_12194118 32.33 ENSRNOT00000071517
RGD1559804
similar to hypothetical protein 4930474N05
chr2_-_228665279 30.74 ENSRNOT00000055648
RGD1306519
similar to T-cell activation Rho GTPase-activating protein isoform b
chr7_+_18310624 30.46 ENSRNOT00000075258
Actl9
actin-like 9
chr16_-_12124265 29.92 ENSRNOT00000080192
AABR07024682.1

chr16_-_12742010 29.58 ENSRNOT00000077513
LOC100911649
ral guanine nucleotide dissociation stimulator-like
chr3_+_148082790 29.33 ENSRNOT00000009930
ENSRNOT00000080767
Defb36
defensin beta 36
chr10_-_41491554 29.17 ENSRNOT00000035759
LOC102552619
uncharacterized LOC102552619
chr20_+_4959294 29.17 ENSRNOT00000074223
Hspa1l
heat shock protein family A (Hsp70) member 1 like
chr19_+_14835822 25.94 ENSRNOT00000072804
1700007B14Rik
RIKEN cDNA 1700007B14 gene
chr16_-_12538117 25.27 ENSRNOT00000046081
AABR07024718.1

chr19_-_36157924 24.50 ENSRNOT00000072022
AABR07043701.1

chr16_+_13050305 24.37 ENSRNOT00000077388
AABR07024735.1

chr16_+_12510827 24.19 ENSRNOT00000077763
AABR07024716.1

chr16_-_12626949 23.96 ENSRNOT00000077469
AABR07024722.1

chr16_-_12662336 23.76 ENSRNOT00000080161
RGD1559508
similar to hypothetical protein 4930474N05
chrX_+_35869538 23.39 ENSRNOT00000058947
Ppef1
protein phosphatase with EF-hand domain 1
chr3_+_121128368 17.43 ENSRNOT00000055882
LOC499886
similar to hypothetical protein 4933411G11
chr10_+_53740841 17.40 ENSRNOT00000004295
Myh2
myosin heavy chain 2
chr17_-_15030364 17.09 ENSRNOT00000044543
Nutm2f
NUT family member 2F
chr4_+_70252366 16.62 ENSRNOT00000073039
Chl1
cell adhesion molecule L1-like
chr10_+_16635989 14.94 ENSRNOT00000028155
Nkx2-5
NK2 homeobox 5
chr1_+_142136452 14.14 ENSRNOT00000016445
Hddc3
HD domain containing 3
chr1_+_199449973 12.13 ENSRNOT00000029994
Trim72
tripartite motif containing 72
chr1_+_148240504 11.50 ENSRNOT00000085373
LOC100361547
Cytochrome P450, family 2, subfamily c, polypeptide 7-like
chr1_-_224533219 11.09 ENSRNOT00000051289
Ust5r
integral membrane transport protein UST5r
chr20_+_6869767 10.35 ENSRNOT00000000631
ENSRNOT00000086330
ENSRNOT00000093188
ENSRNOT00000093736
RGD735065
similar to GI:13385412-like protein splice form I
chr14_-_21553949 9.41 ENSRNOT00000031642
Smr3b
submaxillary gland androgen regulated protein 3B
chr4_-_176231344 9.12 ENSRNOT00000049154
Slco1a1
solute carrier organic anion transporter family, member 1a1
chr18_+_52215682 8.86 ENSRNOT00000037901
Megf10
multiple EGF-like domains 10
chr20_+_27129291 8.71 ENSRNOT00000031053
AABR07044933.1

chr11_+_65960277 8.49 ENSRNOT00000003674
Ndufb4
NADH:ubiquinone oxidoreductase subunit B4
chr14_-_21615488 7.90 ENSRNOT00000002667
Vcsa2
variable coding sequence A2
chr2_+_157453428 7.51 ENSRNOT00000051494
Lekr1
leucine, glutamate and lysine rich 1
chr3_+_63510293 5.79 ENSRNOT00000058093
Dfnb59
deafness, autosomal recessive 59
chr17_-_14637832 5.62 ENSRNOT00000074323
LOC103690116
osteomodulin
chr20_-_556982 5.15 ENSRNOT00000047478
Olr1683
olfactory receptor 1683
chr13_-_61306939 4.58 ENSRNOT00000086610
Rgs21
regulator of G-protein signaling 21
chr9_-_70374553 4.53 ENSRNOT00000064447
Dytn
dystrotelin
chr15_-_27408258 4.17 ENSRNOT00000043588
RGD1562558
similar to Cytochrome c, somatic
chr19_+_22699808 4.09 ENSRNOT00000023169
RGD1308706
similar to RIKEN cDNA 4921524J17
chr4_-_170810080 3.97 ENSRNOT00000082312
Wbp11
WW domain binding protein 11
chr1_+_141120166 3.84 ENSRNOT00000050759
Fanci
Fanconi anemia, complementation group I
chr8_+_43705216 3.68 ENSRNOT00000090425
AC115384.1

chr4_-_170783725 3.56 ENSRNOT00000072528
Wbp11
WW domain binding protein 11
chr3_-_10371240 3.49 ENSRNOT00000012075
Ass1
argininosuccinate synthase 1
chr15_+_49069145 3.27 ENSRNOT00000019487
Scara5
scavenger receptor class A, member 5
chr7_+_91833297 3.16 ENSRNOT00000079792
Slc30a8
solute carrier family 30 member 8
chr4_-_2201749 3.02 ENSRNOT00000089327
Lmbr1
limb development membrane protein 1
chr3_+_102703487 3.01 ENSRNOT00000089603
AC121203.2

chr3_+_102664391 2.80 ENSRNOT00000041791
RGD1561276
similar to olfactory receptor Olfr1289
chr1_+_170796271 2.55 ENSRNOT00000042820
Olr210
olfactory receptor 210
chr7_+_101146820 2.47 ENSRNOT00000080206
AABR07058124.3

chr8_+_23771920 2.44 ENSRNOT00000020481
Bbs9
Bardet-Biedl syndrome 9
chr17_+_66446569 2.32 ENSRNOT00000070825
Heatr1
HEAT repeat containing 1
chr17_-_15478343 2.29 ENSRNOT00000078029
Omd
osteomodulin
chr20_+_1124169 2.15 ENSRNOT00000072544
LOC100910894
olfactory receptor 14J1-like
chr7_-_12569110 2.03 ENSRNOT00000093446
ENSRNOT00000016733
Wdr18
WD repeat domain 18
chr7_+_144080614 2.02 ENSRNOT00000077687
Pcbp2
poly(rC) binding protein 2
chr20_+_1012054 1.96 ENSRNOT00000073732
Olr1704
olfactory receptor 1704
chr3_+_102723402 1.67 ENSRNOT00000040298
Olr765
olfactory receptor 765
chr2_+_193483793 1.34 ENSRNOT00000074518
Flg2
filaggrin family member 2
chr10_-_84920886 0.93 ENSRNOT00000068083
Sp2
Sp2 transcription factor
chr18_-_62476700 0.70 ENSRNOT00000048429
Cycs
cytochrome c, somatic
chr13_-_84694575 0.37 ENSRNOT00000066609
Fmo13
flavin-containing monooxygenase 13
chr10_-_109827143 0.20 ENSRNOT00000054948
Myadml2
myeloid-associated differentiation marker-like 2
chr10_+_39066716 0.11 ENSRNOT00000010729
Il5
interleukin 5

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
5.0 14.9 GO:0003162 atrioventricular node development(GO:0003162) right ventricular cardiac muscle tissue morphogenesis(GO:0003221) septum secundum development(GO:0003285) His-Purkinje system cell differentiation(GO:0060932)
2.7 38.0 GO:1903504 regulation of spindle checkpoint(GO:0090231) regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504)
2.3 29.5 GO:0001778 plasma membrane repair(GO:0001778)
1.3 8.9 GO:0014719 skeletal muscle satellite cell activation(GO:0014719) skeletal muscle satellite cell differentiation(GO:0014816) recognition of apoptotic cell(GO:0043654)
1.2 39.8 GO:0006221 pyrimidine nucleotide biosynthetic process(GO:0006221)
1.2 29.2 GO:0042026 protein refolding(GO:0042026)
1.2 3.5 GO:0000053 argininosuccinate metabolic process(GO:0000053)
1.1 49.7 GO:0051281 positive regulation of release of sequestered calcium ion into cytosol(GO:0051281)
1.0 10.3 GO:1901727 positive regulation of histone deacetylase activity(GO:1901727)
0.4 9.1 GO:0035634 response to stilbenoid(GO:0035634)
0.4 11.5 GO:0019373 epoxygenase P450 pathway(GO:0019373)
0.4 7.5 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.4 16.6 GO:0035640 exploration behavior(GO:0035640)
0.3 162.1 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.3 3.2 GO:0061088 sequestering of zinc ion(GO:0032119) regulation of sequestering of zinc ion(GO:0061088)
0.2 2.0 GO:0075522 IRES-dependent viral translational initiation(GO:0075522)
0.2 2.0 GO:0090070 positive regulation of ribosome biogenesis(GO:0090070) positive regulation of rRNA processing(GO:2000234)
0.2 0.7 GO:0010730 negative regulation of hydrogen peroxide biosynthetic process(GO:0010730)
0.1 3.8 GO:0031572 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.1 3.3 GO:0034755 iron ion transmembrane transport(GO:0034755)
0.1 7.9 GO:0030500 regulation of bone mineralization(GO:0030500)
0.1 44.1 GO:0007283 spermatogenesis(GO:0007283)
0.1 1.3 GO:0061436 establishment of skin barrier(GO:0061436)
0.1 2.4 GO:0061512 protein localization to cilium(GO:0061512)
0.1 14.3 GO:0042742 defense response to bacterium(GO:0042742)
0.1 3.0 GO:0042733 embryonic digit morphogenesis(GO:0042733)
0.0 15.5 GO:0006470 protein dephosphorylation(GO:0006470)
0.0 5.8 GO:0007605 sensory perception of sound(GO:0007605)
0.0 9.4 GO:0010951 negative regulation of endopeptidase activity(GO:0010951)
0.0 0.1 GO:0030222 eosinophil differentiation(GO:0030222)
0.0 0.9 GO:0048144 fibroblast proliferation(GO:0048144)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
2.2 29.2 GO:0002199 zona pellucida receptor complex(GO:0002199)
1.9 17.4 GO:0005826 actomyosin contractile ring(GO:0005826)
1.8 49.7 GO:0002080 acrosomal membrane(GO:0002080)
0.4 44.1 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.4 2.0 GO:0034455 t-UTP complex(GO:0034455)
0.3 8.9 GO:0001891 phagocytic cup(GO:0001891)
0.2 2.4 GO:0034464 BBSome(GO:0034464)
0.2 3.5 GO:0070852 cell body fiber(GO:0070852)
0.2 8.5 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.1 36.3 GO:0005813 centrosome(GO:0005813)
0.1 9.1 GO:0016323 basolateral plasma membrane(GO:0016323)
0.1 12.1 GO:0042383 sarcolemma(GO:0042383)
0.0 16.6 GO:0045177 apical part of cell(GO:0045177)
0.0 3.2 GO:0030658 transport vesicle membrane(GO:0030658)
0.0 0.7 GO:0070469 respiratory chain(GO:0070469)
0.0 6.1 GO:0000139 Golgi membrane(GO:0000139)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 6.2 GO:0001849 complement component C1q binding(GO:0001849)
0.7 168.0 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.5 38.0 GO:0004843 thiol-dependent ubiquitin-specific protease activity(GO:0004843)
0.4 2.0 GO:1990829 C-rich single-stranded DNA binding(GO:1990829)
0.4 11.5 GO:0008392 arachidonic acid epoxygenase activity(GO:0008392)
0.4 23.4 GO:0030145 manganese ion binding(GO:0030145)
0.3 8.5 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.3 12.1 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.3 29.2 GO:0051082 unfolded protein binding(GO:0051082)
0.2 7.5 GO:0050699 WW domain binding(GO:0050699)
0.2 3.8 GO:0070182 DNA polymerase binding(GO:0070182)
0.2 14.9 GO:0001190 transcriptional activator activity, RNA polymerase II transcription factor binding(GO:0001190) transcriptional repressor activity, RNA polymerase II activating transcription factor binding(GO:0098811)
0.2 3.5 GO:0015643 toxic substance binding(GO:0015643)
0.2 44.1 GO:0003735 structural constituent of ribosome(GO:0003735)
0.1 3.2 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.1 16.6 GO:0002020 protease binding(GO:0002020)
0.1 3.3 GO:0005044 scavenger receptor activity(GO:0005044)
0.1 2.0 GO:0030515 snoRNA binding(GO:0030515)
0.1 9.4 GO:0004866 endopeptidase inhibitor activity(GO:0004866)
0.0 0.4 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.7 GO:0009055 electron carrier activity(GO:0009055)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 17.4 PID INTEGRIN A4B1 PATHWAY Alpha4 beta1 integrin signaling events
0.1 15.0 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.1 3.8 PID FANCONI PATHWAY Fanconi anemia pathway
0.1 2.3 NABA PROTEOGLYCANS Genes encoding proteoglycans
0.0 10.2 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.0 0.7 PID HIV NEF PATHWAY HIV-1 Nef: Negative effector of Fas and TNF-alpha

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.2 REACTOME ZINC TRANSPORTERS Genes involved in Zinc transporters
0.2 2.3 REACTOME KERATAN SULFATE DEGRADATION Genes involved in Keratan sulfate degradation
0.1 9.2 REACTOME RESPIRATORY ELECTRON TRANSPORT Genes involved in Respiratory electron transport
0.1 2.0 REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING Genes involved in Negative regulators of RIG-I/MDA5 signaling
0.0 3.5 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives