GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Smad3 | rn6_v1_chr8_-_68678349_68678349 | 0.05 | 3.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_45297385 Show fit | 60.37 |
ENSRNOT00000041187
|
histone cluster 3 H2B family member b |
|
chr17_-_44748188 Show fit | 46.15 |
ENSRNOT00000081970
|
histone H2A type 1-E |
|
chr17_-_44841382 Show fit | 43.94 |
ENSRNOT00000080119
|
histone cluster 1, H2ak |
|
chr17_-_44815995 Show fit | 42.30 |
ENSRNOT00000091201
|
histone H4 variant H4-v.1 |
|
chr17_+_44738643 Show fit | 40.06 |
ENSRNOT00000087643
|
histone H2A type 1-like |
|
chr17_+_44748482 Show fit | 34.13 |
ENSRNOT00000083765
|
histone cluster 1 H2B family member l |
|
chr17_+_44528125 Show fit | 33.77 |
ENSRNOT00000084538
|
similar to Histone H2A type 1 |
|
chr17_+_44520537 Show fit | 33.16 |
ENSRNOT00000077985
|
histone cluster 1, H2ai-like2 |
|
chr2_-_95472115 Show fit | 32.90 |
ENSRNOT00000015720
|
stathmin 2 |
|
chr17_-_43770561 Show fit | 30.36 |
ENSRNOT00000088408
|
histone H4 variant H4-v.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 174.1 | GO:0006342 | chromatin silencing(GO:0006342) |
9.5 | 160.9 | GO:0045653 | negative regulation of megakaryocyte differentiation(GO:0045653) |
1.0 | 85.3 | GO:0006334 | nucleosome assembly(GO:0006334) |
0.6 | 38.3 | GO:0060997 | dendritic spine morphogenesis(GO:0060997) |
5.5 | 33.1 | GO:0021633 | optic nerve structural organization(GO:0021633) |
4.7 | 32.9 | GO:0031117 | positive regulation of microtubule depolymerization(GO:0031117) |
1.8 | 32.7 | GO:0002227 | innate immune response in mucosa(GO:0002227) |
0.6 | 29.0 | GO:0048488 | synaptic vesicle endocytosis(GO:0048488) |
0.2 | 27.0 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
8.3 | 24.9 | GO:0035408 | histone H3-T6 phosphorylation(GO:0035408) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.7 | 326.2 | GO:0000786 | nucleosome(GO:0000786) |
5.7 | 160.9 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.2 | 38.2 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.2 | 34.0 | GO:0030018 | Z disc(GO:0030018) |
2.1 | 33.1 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
0.2 | 32.9 | GO:0030426 | growth cone(GO:0030426) |
0.2 | 28.1 | GO:0043204 | perikaryon(GO:0043204) |
1.0 | 20.7 | GO:0097449 | astrocyte projection(GO:0097449) |
2.1 | 18.5 | GO:0097442 | CA3 pyramidal cell dendrite(GO:0097442) |
3.6 | 18.2 | GO:1990769 | proximal neuron projection(GO:1990769) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 326.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.9 | 176.1 | GO:0042393 | histone binding(GO:0042393) |
0.5 | 34.0 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.3 | 30.6 | GO:0008013 | beta-catenin binding(GO:0008013) |
8.3 | 24.9 | GO:0035403 | histone kinase activity (H3-T6 specific)(GO:0035403) |
0.1 | 23.8 | GO:0008236 | serine-type peptidase activity(GO:0008236) |
5.2 | 20.7 | GO:0015272 | ATP-activated inward rectifier potassium channel activity(GO:0015272) |
0.8 | 18.5 | GO:0002162 | dystroglycan binding(GO:0002162) |
0.9 | 18.4 | GO:0015271 | outward rectifier potassium channel activity(GO:0015271) |
0.0 | 18.3 | GO:0005509 | calcium ion binding(GO:0005509) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 24.9 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.3 | 18.5 | PID LKB1 PATHWAY | LKB1 signaling events |
0.2 | 11.7 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.2 | 10.3 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
0.2 | 9.4 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.0 | 8.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 8.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.3 | 5.4 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.6 | 4.5 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.1 | 2.6 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.0 | 181.6 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
1.3 | 24.9 | REACTOME TRAFFICKING OF GLUR2 CONTAINING AMPA RECEPTORS | Genes involved in Trafficking of GluR2-containing AMPA receptors |
0.7 | 20.7 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.3 | 20.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.4 | 18.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
1.0 | 17.2 | REACTOME NUCLEOTIDE LIKE PURINERGIC RECEPTORS | Genes involved in Nucleotide-like (purinergic) receptors |
0.5 | 16.8 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.6 | 13.1 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.6 | 12.1 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.6 | 10.7 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |