Project
GSE53960: rat RNA-Seq transcriptomic Bodymap
Navigation
Downloads
Results for Rxrb
Z-value: 0.85
Motif logo
Transcription factors associated with Rxrb
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Rxrb | rn6_v1_chr20_+_3827367_3827367 | -0.13 | 2.2e-02 | Click! |
Top targets:  
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_+_150052483 Show fit | 59.68 |
ENSRNOT00000022265
|
similar to chromosome 20 open reading frame 144 |
|
| chr1_-_169334093 Show fit | 54.93 |
ENSRNOT00000032587
|
ubiquilin 3 |
|
| chr10_-_82209459 Show fit | 54.73 |
ENSRNOT00000004377
|
spermatogenesis associated 20 |
|
| chr13_-_74740458 Show fit | 51.76 |
ENSRNOT00000006548
|
testis expressed 35 |
|
| chr7_+_77066955 Show fit | 49.76 |
ENSRNOT00000008700
|
outer dense fiber of sperm tails 1 |
|
| chr19_-_42180981 Show fit | 48.46 |
ENSRNOT00000019577
|
polyamine modulated factor 1 binding protein 1 |
|
| chr7_+_117326279 Show fit | 45.33 |
ENSRNOT00000050522
|
spermatogenesis and centriole associated 1 |
|
| chr1_-_169321075 Show fit | 44.68 |
ENSRNOT00000055216
|
similar to ubiquilin 1 isoform 2 |
|
| chr3_-_149356160 Show fit | 43.10 |
ENSRNOT00000037589
ENSRNOT00000081775 |
Sad1 and UNC84 domain containing 5 |
|
| chr1_+_72644333 Show fit | 41.65 |
ENSRNOT00000048976
ENSRNOT00000065051 |
family with sequence similarity 71, member E2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Rxrb
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 104.5 | GO:0007283 | spermatogenesis(GO:0007283) |
| 11.4 | 45.8 | GO:0061084 | negative regulation of protein refolding(GO:0061084) |
| 5.4 | 43.1 | GO:0090286 | cytoskeletal anchoring at nuclear membrane(GO:0090286) |
| 0.4 | 42.7 | GO:0035335 | peptidyl-tyrosine dephosphorylation(GO:0035335) |
| 4.1 | 37.0 | GO:0015866 | ADP transport(GO:0015866) |
| 7.3 | 36.4 | GO:0015793 | glycerol transport(GO:0015793) |
| 3.7 | 29.3 | GO:1903659 | regulation of complement-dependent cytotoxicity(GO:1903659) |
| 1.7 | 28.5 | GO:0006662 | glycerol ether metabolic process(GO:0006662) |
| 1.4 | 28.3 | GO:0042026 | protein refolding(GO:0042026) |
| 4.6 | 27.7 | GO:0030951 | establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.2 | 98.2 | GO:0001520 | outer dense fiber(GO:0001520) |
| 0.1 | 49.6 | GO:0015630 | microtubule cytoskeleton(GO:0015630) |
| 0.5 | 45.8 | GO:0016234 | inclusion body(GO:0016234) |
| 0.1 | 45.3 | GO:0005813 | centrosome(GO:0005813) |
| 0.7 | 43.1 | GO:0005637 | nuclear inner membrane(GO:0005637) |
| 1.2 | 39.4 | GO:0035371 | microtubule plus-end(GO:0035371) |
| 0.4 | 36.4 | GO:0031526 | brush border membrane(GO:0031526) |
| 0.3 | 28.5 | GO:0036126 | sperm flagellum(GO:0036126) |
| 2.2 | 28.3 | GO:0002199 | zona pellucida receptor complex(GO:0002199) |
| 4.6 | 27.7 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 45.8 | GO:0051087 | chaperone binding(GO:0051087) |
| 1.3 | 45.3 | GO:0043015 | gamma-tubulin binding(GO:0043015) |
| 4.1 | 37.0 | GO:0015217 | ATP transmembrane transporter activity(GO:0005347) ADP transmembrane transporter activity(GO:0015217) |
| 12.1 | 36.4 | GO:0015254 | glycerol channel activity(GO:0015254) |
| 0.7 | 36.3 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
| 1.4 | 30.6 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
| 0.2 | 29.3 | GO:0070851 | growth factor receptor binding(GO:0070851) |
| 3.6 | 28.5 | GO:0047134 | protein-disulfide reductase activity(GO:0047134) |
| 0.6 | 28.3 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.9 | 27.7 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.6 | 27.7 | PID AURORA B PATHWAY | Aurora B signaling |
| 0.5 | 14.2 | PID IL27 PATHWAY | IL27-mediated signaling events |
| 0.1 | 5.1 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
| 0.1 | 2.9 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
| 0.0 | 2.5 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.0 | 2.2 | PID FGF PATHWAY | FGF signaling pathway |
| 0.0 | 1.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.0 | 36.4 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
| 0.9 | 27.7 | REACTOME KINESINS | Genes involved in Kinesins |
| 0.4 | 14.2 | REACTOME IL RECEPTOR SHC SIGNALING | Genes involved in Interleukin receptor SHC signaling |
| 0.5 | 13.3 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
| 0.1 | 10.0 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.1 | 4.2 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
| 0.1 | 3.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
| 0.0 | 2.9 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.2 | 2.5 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
| 0.0 | 2.3 | REACTOME DNA REPAIR | Genes involved in DNA Repair |