GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Rfx5 | rn6_v1_chr2_+_196120580_196120580 | 0.34 | 2.3e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_4043741 Show fit | 85.20 |
ENSRNOT00000000525
|
RT1 class II, locus Bb |
|
chr20_+_4087618 Show fit | 85.19 |
ENSRNOT00000000522
ENSRNOT00000060327 ENSRNOT00000080590 |
RT1 class II, locus Db1 |
|
chr20_+_4039413 Show fit | 76.79 |
ENSRNOT00000082136
|
RT1 class II, locus Bb |
|
chr18_+_56071478 Show fit | 75.94 |
ENSRNOT00000025344
ENSRNOT00000025354 |
CD74 molecule |
|
chr20_+_4020317 Show fit | 56.78 |
ENSRNOT00000000526
|
RT1 class II, locus DOb |
|
chr20_-_4896970 Show fit | 42.69 |
ENSRNOT00000061114
ENSRNOT00000060980 |
RT1 class I, locus CE7 RT1 class I, locus CE5 |
|
chr20_-_5234290 Show fit | 41.50 |
ENSRNOT00000073474
|
RT1 class II, locus DMb |
|
chr1_+_256035866 Show fit | 41.42 |
ENSRNOT00000079726
|
kinesin family member 11 |
|
chr20_+_3945601 Show fit | 40.18 |
ENSRNOT00000075342
|
RT1 class II, locus DMb |
|
chr20_-_5227620 Show fit | 40.18 |
ENSRNOT00000086240
|
RT1 class II, locus DMb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
39.2 | 235.3 | GO:0002399 | MHC class II protein complex assembly(GO:0002399) peptide antigen assembly with MHC class II protein complex(GO:0002503) |
5.1 | 205.9 | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I(GO:0002474) |
40.5 | 162.0 | GO:0002344 | peripheral B cell selection(GO:0002343) B cell affinity maturation(GO:0002344) |
15.2 | 75.9 | GO:0002906 | mature B cell apoptotic process(GO:0002901) regulation of mature B cell apoptotic process(GO:0002905) negative regulation of mature B cell apoptotic process(GO:0002906) |
3.6 | 58.3 | GO:0002504 | antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002504) |
18.9 | 56.8 | GO:0002581 | negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) |
6.9 | 41.4 | GO:0046602 | regulation of mitotic centrosome separation(GO:0046602) |
10.9 | 32.8 | GO:0046967 | cytosol to ER transport(GO:0046967) peptide antigen transport(GO:0046968) |
6.9 | 27.7 | GO:1901423 | response to benzene(GO:1901423) |
13.0 | 25.9 | GO:0002481 | antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
36.8 | 588.4 | GO:0042613 | MHC class II protein complex(GO:0042613) |
12.8 | 217.0 | GO:0042611 | MHC protein complex(GO:0042611) |
0.7 | 41.4 | GO:0005876 | spindle microtubule(GO:0005876) |
4.7 | 32.8 | GO:0042825 | TAP complex(GO:0042825) |
4.6 | 27.7 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.3 | 18.3 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.6 | 18.0 | GO:0042588 | zymogen granule(GO:0042588) |
0.0 | 14.0 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 13.9 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.0 | 13.8 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
17.5 | 368.0 | GO:0023026 | MHC class II protein complex binding(GO:0023026) |
5.4 | 184.7 | GO:0042605 | peptide antigen binding(GO:0042605) |
12.5 | 162.0 | GO:1990405 | protein antigen binding(GO:1990405) |
12.6 | 75.5 | GO:0046977 | TAP binding(GO:0046977) TAP1 binding(GO:0046978) TAP2 binding(GO:0046979) |
2.6 | 41.4 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
1.5 | 27.7 | GO:0070628 | proteasome binding(GO:0070628) |
1.0 | 25.8 | GO:0003823 | antigen binding(GO:0003823) |
0.0 | 20.5 | GO:0003712 | transcription cofactor activity(GO:0003712) |
0.1 | 19.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
6.0 | 18.0 | GO:0050253 | retinyl-palmitate esterase activity(GO:0050253) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 23.9 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 23.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.3 | 10.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.3 | 6.1 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.1 | 4.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 3.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 117.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
2.1 | 37.4 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.5 | 26.9 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.4 | 14.0 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.7 | 10.3 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.2 | 7.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.3 | 6.5 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.1 | 4.4 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |
0.2 | 2.9 | REACTOME P2Y RECEPTORS | Genes involved in P2Y receptors |
0.0 | 2.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |