ISMARA results: Pou1f1

Project

GSE53960: rat RNA-Seq transcriptomic Bodymap

Navigation

Downloads

Results for Pou1f1

Z-value: 2.14

Motif logo

Transcription factors associated with Pou1f1

Gene Symbol	Gene ID	Gene Info
Pou1f1 NCBI RGD Ensembl	ENSRNOG00000000715	POU class 1 homeobox 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pou1f1	rn6_v1_chr11_+_2645865_2645865	-0.48	7.1e-20	Click!

Activity profile of Pou1f1 motif

Sorted Z-values of Pou1f1 motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr14_+_22724399 Show fit	60.66	ENSRNOT00000002724	Ugt2b10 NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase 2 family, polypeptide B10
chr1_-_148119857 Show fit	56.89	ENSRNOT00000040325	LOC100361547 NCBI RGD Ensembl Show fit	Cytochrome P450, family 2, subfamily c, polypeptide 7-like
chr1_+_147713892 Show fit	46.49	ENSRNOT00000092985 ENSRNOT00000054742 ENSRNOT00000074103	Cyp2c6v1 NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1
chr6_-_127816055 Show fit	42.70	ENSRNOT00000013175	Serpina3m NCBI RGD Ensembl Show fit	serine (or cysteine) proteinase inhibitor, clade A, member 3M
chr3_-_63836017 Show fit	42.12	ENSRNOT00000030978	AABR07052585.1 NCBI RGD Ensembl Show fit
chr1_-_76722965 Show fit	41.28	ENSRNOT00000052129	LOC100912485 NCBI RGD Ensembl Show fit	alcohol sulfotransferase-like
chr10_+_53781239 Show fit	40.07	ENSRNOT00000082871	Myh2 NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr1_+_83163079 Show fit	37.99	ENSRNOT00000077725 ENSRNOT00000034845	Cyp2b3 NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily b, polypeptide 3
chr1_-_76614279 Show fit	37.97	ENSRNOT00000041367 ENSRNOT00000089371	LOC100912485 NCBI RGD Ensembl Show fit	alcohol sulfotransferase-like
chr17_+_32973695 Show fit	36.31	ENSRNOT00000065674	RGD1565323 NCBI RGD Ensembl Show fit	similar to OTTMUSP00000000621

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Pou1f1

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.7	2190.6	GO:0050911	detection of chemical stimulus involved in sensory perception of smell(GO:0050911)
9.2	248.0	GO:0019373	epoxygenase P450 pathway(GO:0019373)
0.5	136.9	GO:0010951	negative regulation of endopeptidase activity(GO:0010951)
4.3	68.1	GO:0031034	myosin filament assembly(GO:0031034)
7.3	58.3	GO:0034197	acylglycerol transport(GO:0034196) triglyceride transport(GO:0034197)
1.9	49.2	GO:0001580	detection of chemical stimulus involved in sensory perception of bitter taste(GO:0001580)
2.9	46.0	GO:0035634	response to stilbenoid(GO:0035634)
3.1	45.8	GO:0034310	primary alcohol catabolic process(GO:0034310)
0.7	40.3	GO:0005978	glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250)
3.4	37.7	GO:0070327	thyroid hormone transport(GO:0070327)

Showing 1 to 10 of 399 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1925.0	GO:0016021	integral component of membrane(GO:0016021)
0.2	249.3	GO:0005615	extracellular space(GO:0005615)
1.3	147.3	GO:0072562	blood microparticle(GO:0072562)
0.7	82.8	GO:0030018	Z disc(GO:0030018)
2.3	68.0	GO:0034364	high-density lipoprotein particle(GO:0034364)
1.2	63.2	GO:0005747	mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.4	61.4	GO:0005789	endoplasmic reticulum membrane(GO:0005789)
6.1	54.7	GO:0005826	actomyosin contractile ring(GO:0005826)
0.4	44.6	GO:0001669	acrosomal vesicle(GO:0001669)
0.9	39.4	GO:0043034	costamere(GO:0043034)

Showing 1 to 10 of 151 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	1350.8	GO:0004984	olfactory receptor activity(GO:0004984)
2.1	831.2	GO:0005549	odorant binding(GO:0005549)
8.2	247.3	GO:0008392	arachidonic acid epoxygenase activity(GO:0008392)
6.4	199.5	GO:0015020	glucuronosyltransferase activity(GO:0015020)
1.2	130.9	GO:0004867	serine-type endopeptidase inhibitor activity(GO:0004867)
0.4	91.7	GO:0004252	serine-type endopeptidase activity(GO:0004252)
17.0	85.2	GO:0005550	pheromone binding(GO:0005550)
0.6	68.1	GO:0005179	hormone activity(GO:0005179)
19.4	58.3	GO:0004556	alpha-amylase activity(GO:0004556)
14.5	43.6	GO:0003844	1,4-alpha-glucan branching enzyme activity(GO:0003844)

Showing 1 to 10 of 292 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	106.6	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
1.1	53.4	SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES	Genes related to regulation of the actin cytoskeleton
0.7	37.7	PID HNF3B PATHWAY	FOXA2 and FOXA3 transcription factor networks
0.6	36.5	PID CASPASE PATHWAY	Caspase cascade in apoptosis
2.9	31.4	ST JAK STAT PATHWAY	Jak-STAT Pathway
0.9	27.2	PID INSULIN GLUCOSE PATHWAY	Insulin-mediated glucose transport
0.3	24.9	PID MYC ACTIV PATHWAY	Validated targets of C-MYC transcriptional activation
0.9	23.6	ST WNT CA2 CYCLIC GMP PATHWAY	Wnt/Ca2+/cyclic GMP signaling.
0.3	8.5	PID CD40 PATHWAY	CD40/CD40L signaling
0.2	8.3	PID ERBB4 PATHWAY	ErbB4 signaling events

Showing 1 to 10 of 37 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
7.6	143.5	REACTOME GLUCURONIDATION	Genes involved in Glucuronidation
0.6	103.0	REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES	Genes involved in Metabolism of amino acids and derivatives
1.3	86.6	REACTOME RESPIRATORY ELECTRON TRANSPORT	Genes involved in Respiratory electron transport
0.8	61.1	REACTOME GLUCOSE METABOLISM	Genes involved in Glucose metabolism
1.4	52.7	REACTOME STRIATED MUSCLE CONTRACTION	Genes involved in Striated Muscle Contraction
8.0	47.9	REACTOME DIGESTION OF DIETARY CARBOHYDRATE	Genes involved in Digestion of dietary carbohydrate
2.3	34.1	REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL	Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
1.6	32.9	REACTOME INTRINSIC PATHWAY	Genes involved in Intrinsic Pathway
1.5	24.9	REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT	Genes involved in Chylomicron-mediated lipid transport
1.4	24.0	REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION	Genes involved in Unblocking of NMDA receptor, glutamate binding and activation

Showing 1 to 10 of 93 entries

Results for Pou1f1

Z-value: 2.14

Motif logo

Transcription factors associated with Pou1f1

Activity-expression correlation:

Activity profile of Pou1f1 motif

Sorted Z-values of Pou1f1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Pou1f1

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: