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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Pgr_Nr3c1

Z-value: 0.32

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Transcription factors associated with Pgr_Nr3c1

Gene Symbol Gene ID Gene Info
Pgr
ENSRNOG00000006831 progesterone receptor
Nr3c1
ENSRNOG00000014096 nuclear receptor subfamily 3, group C, member 1
Nr3c1
ENSRNOG00000048800 nuclear receptor subfamily 3, group C, member 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Nr3c1rn6_v1_chr18_-_31749647_317496470.459.8e-18Click!
Pgrrn6_v1_chr8_+_7128656_7128656-0.081.7e-01Click!

Activity profile of Pgr_Nr3c1 motif

Sorted Z-values of Pgr_Nr3c1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr13_+_52624878 12.51 ENSRNOT00000076054
ENSRNOT00000076299
Tnni1
troponin I1, slow skeletal type
chr10_+_92628356 11.17 ENSRNOT00000072480
Myl4
myosin, light chain 4
chr10_+_5930298 8.11 ENSRNOT00000044626
Grin2a
glutamate ionotropic receptor NMDA type subunit 2A
chr7_+_38819771 5.29 ENSRNOT00000006109
Lum
lumican
chr3_+_129599353 4.41 ENSRNOT00000008734
Snap25
synaptosomal-associated protein 25
chr2_-_184993341 4.30 ENSRNOT00000071580
Fam160a1
family with sequence similarity 160, member A1
chr10_-_83898527 4.10 ENSRNOT00000009815
Atp5g1
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
chr17_-_42127678 3.41 ENSRNOT00000024196
Gpld1
glycosylphosphatidylinositol specific phospholipase D1
chr2_+_184230459 3.24 ENSRNOT00000074187
AABR07012054.1

chr3_+_177310753 3.24 ENSRNOT00000031448
Myt1
myelin transcription factor 1
chr10_+_5199226 3.23 ENSRNOT00000003544
Dexi
dexamethasone-induced transcript
chr5_-_65073012 3.23 ENSRNOT00000007957
Grin3a
glutamate ionotropic receptor NMDA type subunit 3A
chr9_+_17705212 2.94 ENSRNOT00000026728
Tmem63b
transmembrane protein 63B
chr4_+_71621729 2.89 ENSRNOT00000022275
Gstk1
glutathione S-transferase kappa 1
chr2_+_116970344 2.83 ENSRNOT00000039603
Egfem1
EGF-like and EMI domain containing 1
chr6_+_18970564 2.69 ENSRNOT00000090121
ENSRNOT00000030803
Cwf19l2
CWF19-like 2, cell cycle control (S. pombe)
chr10_-_60542410 2.44 ENSRNOT00000082426
Olr1498
olfactory receptor 1498
chr19_+_46733633 2.12 ENSRNOT00000016307
Clec3a
C-type lectin domain family 3, member A
chr15_+_58016238 1.87 ENSRNOT00000075786
Kctd4
potassium channel tetramerization domain containing 4
chr16_+_3293599 1.62 ENSRNOT00000081999
ENSRNOT00000047118
ENSRNOT00000020427
Erc2
ELKS/RAB6-interacting/CAST family member 2
chr2_+_205525204 1.55 ENSRNOT00000091210
Csde1
cold shock domain containing E1
chr1_-_171028743 1.14 ENSRNOT00000026488
Olr223
olfactory receptor 223
chr10_-_60309306 0.92 ENSRNOT00000083439
Olr1486
olfactory receptor 1486
chr3_-_76114902 0.86 ENSRNOT00000071564
LOC102555599
olfactory receptor 5L1-like
chr3_+_110508403 0.84 ENSRNOT00000079959
AABR07053500.2

chr7_-_104556419 0.75 ENSRNOT00000090784
Fam49b
family with sequence similarity 49, member B
chr8_+_42817108 0.74 ENSRNOT00000072645
LOC100910120
olfactory receptor 8D1-like
chr4_+_72239942 0.72 ENSRNOT00000048423
Olr807
olfactory receptor 807
chr11_+_43143882 0.59 ENSRNOT00000041445
Olr1528
olfactory receptor 1528
chr7_+_42269784 0.47 ENSRNOT00000008471
ENSRNOT00000007231
Kitlg
KIT ligand
chr11_-_45616429 0.42 ENSRNOT00000046587
Olr1533
olfactory receptor 1533
chr11_-_45667254 0.20 ENSRNOT00000072466
Olr1535
olfactory receptor 1535
chr10_+_60043848 0.16 ENSRNOT00000080593
AABR07029918.1

chr11_+_43340505 0.12 ENSRNOT00000043299
Olr1541
olfactory receptor 1541
chr8_+_1459526 0.07 ENSRNOT00000034503
Kbtbd3
kelch repeat and BTB domain containing 3

Network of associatons between targets according to the STRING database.

First level regulatory network of Pgr_Nr3c1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 8.1 GO:0033058 directional locomotion(GO:0033058)
1.5 4.4 GO:1990926 short-term synaptic potentiation(GO:1990926)
1.1 3.4 GO:0071282 regulation of high-density lipoprotein particle clearance(GO:0010982) positive regulation of lipoprotein particle clearance(GO:0010986) cellular response to iron(II) ion(GO:0071282)
1.0 12.5 GO:0014883 transition between fast and slow fiber(GO:0014883)
0.9 5.3 GO:0032914 positive regulation of transforming growth factor beta1 production(GO:0032914)
0.3 11.2 GO:0002026 regulation of the force of heart contraction(GO:0002026)
0.3 3.2 GO:0060539 diaphragm development(GO:0060539)
0.3 1.6 GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966)
0.2 0.7 GO:2000568 memory T cell activation(GO:0035709) regulation of memory T cell activation(GO:2000567) positive regulation of memory T cell activation(GO:2000568)
0.2 3.2 GO:0060134 prepulse inhibition(GO:0060134)
0.1 4.1 GO:0015986 energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 0.5 GO:0070662 negative regulation of mast cell apoptotic process(GO:0033026) mast cell proliferation(GO:0070662) regulation of mast cell proliferation(GO:0070666) positive regulation of mast cell proliferation(GO:0070668)
0.1 2.9 GO:0006749 glutathione metabolic process(GO:0006749)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 12.5 GO:0005861 troponin complex(GO:0005861)
0.9 4.4 GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032)
0.7 8.1 GO:0098839 postsynaptic density membrane(GO:0098839)
0.4 5.3 GO:0005583 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.3 4.1 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.2 3.2 GO:0017146 NMDA selective glutamate receptor complex(GO:0017146)
0.2 11.2 GO:0031672 A band(GO:0031672)
0.2 1.6 GO:0070937 CRD-mediated mRNA stability complex(GO:0070937)
0.0 1.0 GO:0034364 high-density lipoprotein particle(GO:0034364)
0.0 1.6 GO:0048786 presynaptic active zone(GO:0048786)
0.0 2.9 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 11.3 GO:0004972 NMDA glutamate receptor activity(GO:0004972)
0.4 3.4 GO:0004630 phospholipase D activity(GO:0004630)
0.4 11.2 GO:0003785 actin monomer binding(GO:0003785)
0.2 0.7 GO:0023030 MHC class Ib protein complex binding(GO:0023025) MHC class Ib protein binding, via antigen binding groove(GO:0023030)
0.2 4.1 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.1 4.4 GO:0017075 syntaxin-1 binding(GO:0017075)
0.1 2.9 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.1 0.5 GO:0005173 stem cell factor receptor binding(GO:0005173)
0.1 5.3 GO:0005518 collagen binding(GO:0005518)
0.0 12.5 GO:0003779 actin binding(GO:0003779)
0.0 3.2 GO:0001158 enhancer sequence-specific DNA binding(GO:0001158)
0.0 1.6 GO:0030165 PDZ domain binding(GO:0030165)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 8.1 PID REELIN PATHWAY Reelin signaling pathway
0.1 5.3 NABA PROTEOGLYCANS Genes encoding proteoglycans
0.1 3.4 PID UPA UPAR PATHWAY Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling
0.0 1.6 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.0 2.1 NABA ECM AFFILIATED Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 23.7 REACTOME STRIATED MUSCLE CONTRACTION Genes involved in Striated Muscle Contraction
0.5 8.1 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.4 5.3 REACTOME KERATAN SULFATE DEGRADATION Genes involved in Keratan sulfate degradation
0.3 4.4 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle
0.3 4.1 REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING Genes involved in Formation of ATP by chemiosmotic coupling
0.0 0.5 REACTOME REGULATION OF KIT SIGNALING Genes involved in Regulation of KIT signaling