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GSE53960: rat RNA-Seq transcriptomic Bodymap
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Results for Obox6_Obox5
Z-value: 0.96
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Transcription factors associated with Obox6_Obox5
| Gene Symbol | Gene ID | Gene Info |
|---|
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr18_+_25749098 Show fit | 48.24 |
ENSRNOT00000027771
|
calcium/calmodulin-dependent protein kinase IV |
|
| chr20_+_28572242 Show fit | 34.46 |
ENSRNOT00000072485
|
SH3 domain containing ring finger 3 |
|
| chr11_-_4397361 Show fit | 32.99 |
ENSRNOT00000046370
|
cell adhesion molecule 2 |
|
| chr1_-_67284864 Show fit | 25.72 |
ENSRNOT00000082908
|
similar to zinc finger and SCAN domain containing 4 |
|
| chr3_+_113318563 Show fit | 21.92 |
ENSRNOT00000089230
|
creatine kinase, mitochondrial 1 |
|
| chr7_-_106753592 Show fit | 21.82 |
ENSRNOT00000006930
|
potassium voltage-gated channel subfamily Q member 3 |
|
| chr11_+_57505005 Show fit | 21.82 |
ENSRNOT00000002942
|
transgelin-3 |
|
| chr16_+_39144972 Show fit | 20.02 |
ENSRNOT00000086728
|
ADAM metallopeptidase domain 21 |
|
| chr3_+_48106099 Show fit | 19.99 |
ENSRNOT00000007218
|
solute carrier family 4 member 10 |
|
| chr8_-_53899669 Show fit | 19.94 |
ENSRNOT00000082257
|
neural cell adhesion molecule 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Obox6_Obox5
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 53.3 | GO:0035641 | locomotory exploration behavior(GO:0035641) |
| 1.0 | 52.3 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
| 1.2 | 49.1 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
| 3.7 | 48.2 | GO:0002371 | dendritic cell cytokine production(GO:0002371) |
| 1.0 | 30.4 | GO:0007413 | axonal fasciculation(GO:0007413) |
| 6.6 | 19.9 | GO:0001928 | regulation of exocyst assembly(GO:0001928) |
| 0.2 | 19.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
| 0.2 | 19.4 | GO:0032091 | negative regulation of protein binding(GO:0032091) |
| 2.3 | 18.8 | GO:2000253 | positive regulation of feeding behavior(GO:2000253) |
| 1.7 | 18.5 | GO:0007258 | JUN phosphorylation(GO:0007258) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 72.1 | GO:0030424 | axon(GO:0030424) |
| 1.4 | 54.4 | GO:0032809 | neuronal cell body membrane(GO:0032809) |
| 0.3 | 51.7 | GO:0001650 | fibrillar center(GO:0001650) |
| 0.3 | 45.9 | GO:0030427 | site of polarized growth(GO:0030427) |
| 1.6 | 37.8 | GO:1902711 | GABA-A receptor complex(GO:1902711) |
| 3.9 | 35.4 | GO:0097442 | CA3 pyramidal cell dendrite(GO:0097442) |
| 0.6 | 33.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 33.4 | GO:0043204 | perikaryon(GO:0043204) |
| 0.3 | 33.1 | GO:0005923 | bicellular tight junction(GO:0005923) |
| 1.6 | 27.7 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 66.0 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.6 | 56.6 | GO:0016503 | pheromone receptor activity(GO:0016503) |
| 4.1 | 49.3 | GO:0009931 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) |
| 0.1 | 34.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.1 | 29.0 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
| 5.8 | 28.9 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) |
| 0.2 | 28.5 | GO:0044325 | ion channel binding(GO:0044325) |
| 0.3 | 25.2 | GO:0008081 | phosphoric diester hydrolase activity(GO:0008081) |
| 2.4 | 23.6 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
| 3.1 | 21.9 | GO:0004111 | creatine kinase activity(GO:0004111) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 62.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.6 | 27.1 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
| 0.5 | 27.0 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
| 0.1 | 23.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
| 0.4 | 19.9 | PID FGF PATHWAY | FGF signaling pathway |
| 0.4 | 17.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
| 0.6 | 16.5 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.3 | 15.3 | PID LKB1 PATHWAY | LKB1 signaling events |
| 0.3 | 15.0 | NABA COLLAGENS | Genes encoding collagen proteins |
| 0.4 | 14.6 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 71.0 | REACTOME POST NMDA RECEPTOR ACTIVATION EVENTS | Genes involved in Post NMDA receptor activation events |
| 1.9 | 52.7 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
| 2.4 | 40.8 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
| 1.8 | 23.0 | REACTOME ROLE OF SECOND MESSENGERS IN NETRIN1 SIGNALING | Genes involved in Role of second messengers in netrin-1 signaling |
| 0.6 | 22.5 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
| 0.6 | 22.4 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |
| 0.7 | 19.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
| 1.2 | 18.5 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
| 0.5 | 18.1 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
| 0.1 | 17.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |