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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for Obox3

Z-value: 0.51

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Transcription factors associated with Obox3

Gene Symbol Gene ID Gene Info

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
RGD1564236rn6_v1_chr9_+_101197255_1011972550.442.6e-16Click!

Activity profile of Obox3 motif

Sorted Z-values of Obox3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_-_51576376 16.18 ENSRNOT00000004829
Arhgap44
Rho GTPase activating protein 44
chr20_-_8574082 12.10 ENSRNOT00000048845
Mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1
chr18_-_37776453 11.26 ENSRNOT00000087876
Dpysl3
dihydropyrimidinase-like 3
chr10_-_55560422 11.16 ENSRNOT00000006883
Rangrf
RAN guanine nucleotide release factor
chr4_+_123586231 11.07 ENSRNOT00000049657
ENSRNOT00000013232
Grip2
glutamate receptor interacting protein 2
chr10_+_83954279 10.38 ENSRNOT00000006594
Ttll6
tubulin tyrosine ligase like 6
chr6_-_8344897 10.24 ENSRNOT00000082353
Prepl
prolyl endopeptidase-like
chr6_+_10483308 9.17 ENSRNOT00000074516
Tmem247
transmembrane protein 247
chr3_+_43255567 8.94 ENSRNOT00000044419
Gpd2
glycerol-3-phosphate dehydrogenase 2
chr4_-_155763500 8.58 ENSRNOT00000071745
LOC100909595
solute carrier family 2, facilitated glucose transporter member 3-like
chr3_+_112242270 8.24 ENSRNOT00000080533
ENSRNOT00000082876
Capn3
calpain 3
chr8_-_87315955 7.90 ENSRNOT00000081437
Filip1
filamin A interacting protein 1
chr17_-_57526461 7.25 ENSRNOT00000072723
LOC103690053
ankyrin repeat domain-containing protein 26-like
chr7_-_49741540 6.88 ENSRNOT00000006523
Myf6
myogenic factor 6
chr2_-_62634785 6.56 ENSRNOT00000017937
Pdzd2
PDZ domain containing 2
chr2_+_93712992 6.53 ENSRNOT00000059326
Fabp12
fatty acid binding protein 12
chr7_+_94795214 6.52 ENSRNOT00000005722
Deptor
DEP domain containing MTOR-interacting protein
chr19_+_51985170 6.37 ENSRNOT00000019443
Hsbp1
heat shock factor binding protein 1
chr1_+_224824799 6.14 ENSRNOT00000024757
Slc22a6
solute carrier family 22 member 6
chrX_-_73562046 6.13 ENSRNOT00000080501
Gm14597
predicted gene 14597
chr1_+_72661211 6.12 ENSRNOT00000033197
Cox6b2
cytochrome c oxidase subunit VIb polypeptide 2
chr14_+_23089699 5.79 ENSRNOT00000036948
Tmprss11e
transmembrane protease, serine 11e
chr6_-_106971250 5.39 ENSRNOT00000010926
Dpf3
double PHD fingers 3
chr12_-_22477052 5.36 ENSRNOT00000075504
Ache
acetylcholinesterase
chr8_-_107490093 5.01 ENSRNOT00000046832
LOC684466
similar to Fas apoptotic inhibitory molecule 1 (rFAIM)
chr2_-_41785792 4.94 ENSRNOT00000015871
Rab3c
RAB3C, member RAS oncogene family
chrM_+_7758 4.58 ENSRNOT00000046201
Mt-atp8
mitochondrially encoded ATP synthase 8
chrM_+_7919 4.57 ENSRNOT00000046108
Mt-atp6
mitochondrially encoded ATP synthase 6
chr5_+_133896141 4.54 ENSRNOT00000011434
Pdzk1ip1
PDZK1 interacting protein 1
chr6_-_26855658 4.51 ENSRNOT00000011635
Agbl5
ATP/GTP binding protein-like 5
chr6_+_101288951 4.36 ENSRNOT00000046901
RGD1562540
RGD1562540
chrX_-_116638508 4.34 ENSRNOT00000030400
Lhfpl1
lipoma HMGIC fusion partner-like 1
chr10_+_15156207 3.98 ENSRNOT00000020363
Ccdc78
coiled-coil domain containing 78
chr10_+_69737328 3.90 ENSRNOT00000055999
ENSRNOT00000076773
Tmem132e
transmembrane protein 132E
chr4_-_100783750 3.78 ENSRNOT00000078956
Kcmf1
potassium channel modulatory factor 1
chr10_-_83332851 3.64 ENSRNOT00000007133
Nxph3
neurexophilin 3
chrX_+_105911925 3.43 ENSRNOT00000052422
LOC108348137
armadillo repeat-containing X-linked protein 1
chr15_+_3938075 2.99 ENSRNOT00000065644
Camk2g
calcium/calmodulin-dependent protein kinase II gamma
chr8_+_94686938 2.93 ENSRNOT00000013285
Ripply2
ripply transcriptional repressor 2
chr4_-_165747201 2.69 ENSRNOT00000007435
Tas2r130
taste receptor, type 2, member 130
chr7_-_106695570 2.64 ENSRNOT00000083517
Hhla1
HERV-H LTR-associating 1
chr10_+_54512983 2.43 ENSRNOT00000005204
Stx8
syntaxin 8
chr5_+_81431600 2.29 ENSRNOT00000013675
Trim32
tripartite motif-containing 32
chr13_-_35858390 2.27 ENSRNOT00000003568
Ptpn4
protein tyrosine phosphatase, non-receptor type 4
chr5_+_159484370 2.25 ENSRNOT00000010593
Sdhb
succinate dehydrogenase complex iron sulfur subunit B
chr19_+_60017746 2.17 ENSRNOT00000042623
Pard3
par-3 family cell polarity regulator
chr13_+_77940454 2.17 ENSRNOT00000003460
Mrps14
mitochondrial ribosomal protein S14
chr16_+_19896986 2.00 ENSRNOT00000060355
Gtpbp3
GTP binding protein 3
chr6_-_132958546 1.95 ENSRNOT00000041903
Begain
brain-enriched guanylate kinase-associated
chr1_-_266074181 1.93 ENSRNOT00000026378
Psd
pleckstrin and Sec7 domain containing
chr10_-_15305549 1.79 ENSRNOT00000027353
Pigq
phosphatidylinositol glycan anchor biosynthesis, class Q
chr17_+_81798756 1.70 ENSRNOT00000066826
Cacnb2
calcium voltage-gated channel auxiliary subunit beta 2
chr10_-_91807937 1.63 ENSRNOT00000005074
Wnt9b
wingless-type MMTV integration site family, member 9B
chr5_-_61734011 1.56 ENSRNOT00000012915
Tstd2
thiosulfate sulfurtransferase like domain containing 2
chr8_-_116465801 1.43 ENSRNOT00000085915
Sema3f
semaphorin 3F
chr19_-_43215077 1.39 ENSRNOT00000082151
Aars
alanyl-tRNA synthetase
chr1_+_189870622 1.37 ENSRNOT00000075003
Tmem159
transmembrane protein 159
chr5_+_98387291 1.23 ENSRNOT00000046503
Tyrp1
tyrosinase-related protein 1
chr18_+_40962146 1.16 ENSRNOT00000035656
Arl14epl
ADP ribosylation factor like GTPase 14 effector protein like
chr8_+_55050284 1.14 ENSRNOT00000013242
Pih1d2
PIH1 domain containing 2
chr19_-_43215281 1.14 ENSRNOT00000025052
Aars
alanyl-tRNA synthetase
chr10_-_55851235 1.10 ENSRNOT00000010790
Gucy2d
guanylate cyclase 2D, retinal
chr3_+_75437833 1.07 ENSRNOT00000042246
Olr561
olfactory receptor 561
chr1_+_213686046 1.03 ENSRNOT00000019808
LOC108348167
NACHT, LRR and PYD domains-containing protein 6-like
chr15_+_41448064 1.03 ENSRNOT00000019551
Sacs
sacsin molecular chaperone
chr4_-_153593773 0.69 ENSRNOT00000082982
Mical3
microtubule associated monooxygenase, calponin and LIM domain containing 3
chr5_-_115387377 0.69 ENSRNOT00000036030
ENSRNOT00000077492
RGD1560146
similar to hypothetical protein MGC34837
chr1_-_22404002 0.55 ENSRNOT00000044098
Taar8a
trace amine-associated receptor 8a
chr19_+_9622611 0.28 ENSRNOT00000061498
Slc38a7
solute carrier family 38, member 7
chr17_+_34665872 0.23 ENSRNOT00000092101
ENSRNOT00000085704
Exoc2
exocyst complex component 2
chr10_-_103481153 0.20 ENSRNOT00000035639
Cd300lb
CD300 molecule-like family member b
chr18_+_56544652 0.12 ENSRNOT00000024171
Pde6a
phosphodiesterase 6A
chr8_+_41285450 0.06 ENSRNOT00000076562
Olr1222
olfactory receptor 1222
chr2_+_60966789 0.05 ENSRNOT00000025490
Slc45a2
solute carrier family 45, member 2

Network of associatons between targets according to the STRING database.

First level regulatory network of Obox3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
4.0 16.2 GO:0098886 modification of dendritic spine(GO:0098886)
2.7 8.2 GO:1990091 sodium-dependent self proteolysis(GO:1990091)
2.0 12.1 GO:0051964 negative regulation of synapse assembly(GO:0051964)
1.8 8.9 GO:0019563 glycerol catabolic process(GO:0019563)
1.2 11.2 GO:1900825 regulation of membrane depolarization during cardiac muscle cell action potential(GO:1900825)
1.0 10.4 GO:0018095 protein polyglutamylation(GO:0018095)
1.0 6.1 GO:0031427 response to methotrexate(GO:0031427)
0.9 6.9 GO:0048743 positive regulation of skeletal muscle fiber development(GO:0048743)
0.9 8.6 GO:0070837 dehydroascorbic acid transport(GO:0070837)
0.8 11.1 GO:0014824 artery smooth muscle contraction(GO:0014824)
0.8 11.3 GO:0051764 actin crosslink formation(GO:0051764)
0.6 2.5 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.6 5.4 GO:0008291 acetylcholine metabolic process(GO:0008291) acetate ester metabolic process(GO:1900619)
0.6 4.0 GO:0098535 de novo centriole assembly(GO:0098535)
0.6 1.7 GO:1904879 positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel(GO:1904879)
0.5 6.5 GO:0045792 negative regulation of cell size(GO:0045792)
0.5 4.5 GO:0035608 protein deglutamylation(GO:0035608)
0.4 2.3 GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway(GO:1903265)
0.4 2.2 GO:0003383 apical constriction(GO:0003383)
0.3 1.6 GO:0072181 mesonephric duct formation(GO:0072181)
0.3 1.9 GO:0006863 purine nucleobase transport(GO:0006863) nucleobase transport(GO:0015851)
0.3 9.2 GO:0015985 energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.3 1.2 GO:1900378 positive regulation of melanin biosynthetic process(GO:0048023) positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.2 3.0 GO:1901897 regulation of relaxation of cardiac muscle(GO:1901897)
0.2 1.4 GO:0097490 trunk segmentation(GO:0035290) trunk neural crest cell migration(GO:0036484) ventral trunk neural crest cell migration(GO:0036486) sympathetic neuron projection extension(GO:0097490) sympathetic neuron projection guidance(GO:0097491)
0.2 2.9 GO:0032525 somite rostral/caudal axis specification(GO:0032525)
0.1 2.3 GO:0006105 succinate metabolic process(GO:0006105)
0.1 1.0 GO:0090084 negative regulation of inclusion body assembly(GO:0090084)
0.1 6.4 GO:0035987 endodermal cell differentiation(GO:0035987)
0.1 2.7 GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste(GO:0001580)
0.1 0.3 GO:0089709 histidine transport(GO:0015817) L-histidine transmembrane transport(GO:0089709) L-histidine transport(GO:1902024)
0.1 2.4 GO:0045022 early endosome to late endosome transport(GO:0045022)
0.1 6.1 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.1 1.8 GO:0006506 GPI anchor biosynthetic process(GO:0006506)
0.0 4.9 GO:0019882 antigen processing and presentation(GO:0019882)
0.0 2.0 GO:0006400 tRNA modification(GO:0006400)
0.0 0.2 GO:2000535 entry of bacterium into host cell(GO:0035635) regulation of entry of bacterium into host cell(GO:2000535)
0.0 2.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.0 0.1 GO:0015770 disaccharide transport(GO:0015766) sucrose transport(GO:0015770) oligosaccharide transport(GO:0015772)
0.0 0.7 GO:0030042 actin filament depolymerization(GO:0030042)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.8 8.9 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.8 4.0 GO:0098536 deuterosome(GO:0098536)
0.8 2.3 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.6 9.2 GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)
0.4 2.2 GO:0033269 internode region of axon(GO:0033269)
0.4 6.1 GO:0030061 mitochondrial crista(GO:0030061)
0.4 5.4 GO:0071565 nBAF complex(GO:0071565)
0.4 5.4 GO:0043083 synaptic cleft(GO:0043083)
0.3 12.1 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.3 16.2 GO:0048786 presynaptic active zone(GO:0048786)
0.3 11.3 GO:0031941 filamentous actin(GO:0031941)
0.2 1.8 GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506)
0.2 2.3 GO:0005859 muscle myosin complex(GO:0005859)
0.2 1.7 GO:1990454 L-type voltage-gated calcium channel complex(GO:1990454)
0.2 17.3 GO:0005901 caveola(GO:0005901)
0.1 1.2 GO:0033162 melanosome membrane(GO:0033162) chitosome(GO:0045009)
0.1 8.2 GO:0030315 T-tubule(GO:0030315)
0.1 8.3 GO:0043198 dendritic shaft(GO:0043198)
0.1 3.0 GO:0033017 sarcoplasmic reticulum membrane(GO:0033017)
0.1 10.4 GO:0036064 ciliary basal body(GO:0036064)
0.1 2.2 GO:0000314 organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763)
0.1 4.5 GO:0072686 mitotic spindle(GO:0072686)
0.0 2.4 GO:0031201 SNARE complex(GO:0031201)
0.0 4.9 GO:0008021 synaptic vesicle(GO:0008021)
0.0 8.5 GO:0014069 postsynaptic density(GO:0014069)
0.0 7.9 GO:0015629 actin cytoskeleton(GO:0015629)
0.0 1.8 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 13.5 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.2 GO:0000145 exocyst(GO:0000145)
0.0 14.5 GO:0005856 cytoskeleton(GO:0005856)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.0 8.9 GO:0052591 sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity(GO:0052590) sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity(GO:0052591)
2.8 11.2 GO:0005087 Ran guanyl-nucleotide exchange factor activity(GO:0005087)
2.1 10.4 GO:0070739 protein-glutamic acid ligase activity(GO:0070739)
1.8 5.4 GO:0003990 acetylcholinesterase activity(GO:0003990)
1.4 11.3 GO:0035374 chondroitin sulfate binding(GO:0035374)
1.0 8.6 GO:0055056 D-glucose transmembrane transporter activity(GO:0055056)
0.9 10.2 GO:0070008 serine-type exopeptidase activity(GO:0070008)
0.8 2.3 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177) 3 iron, 4 sulfur cluster binding(GO:0051538)
0.6 2.5 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.6 6.1 GO:1901702 urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702)
0.6 8.2 GO:0031432 titin binding(GO:0031432)
0.6 11.1 GO:0030159 receptor signaling complex scaffold activity(GO:0030159)
0.4 2.3 GO:0004726 non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.3 1.2 GO:0016716 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen(GO:0016716)
0.3 1.8 GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176)
0.3 1.7 GO:0086056 voltage-gated calcium channel activity involved in AV node cell action potential(GO:0086056)
0.3 13.5 GO:0048365 Rac GTPase binding(GO:0048365)
0.2 6.1 GO:0015002 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.2 2.4 GO:0019869 chloride channel inhibitor activity(GO:0019869)
0.2 4.9 GO:0031489 myosin V binding(GO:0031489)
0.2 2.7 GO:0033038 bitter taste receptor activity(GO:0033038)
0.2 4.5 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.2 1.9 GO:0015216 purine nucleotide transmembrane transporter activity(GO:0015216)
0.1 1.6 GO:0039706 co-receptor binding(GO:0039706)
0.1 1.4 GO:0045499 chemorepellent activity(GO:0045499)
0.1 9.2 GO:0015078 hydrogen ion transmembrane transporter activity(GO:0015078)
0.1 0.3 GO:0005290 L-histidine transmembrane transporter activity(GO:0005290)
0.1 3.0 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.1 1.4 GO:0017160 Ral GTPase binding(GO:0017160)
0.1 2.3 GO:0031369 translation initiation factor binding(GO:0031369)
0.1 2.2 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.1 6.9 GO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705)
0.1 1.0 GO:0070628 proteasome binding(GO:0070628)
0.0 0.5 GO:0001594 trace-amine receptor activity(GO:0001594)
0.0 0.7 GO:0071949 FAD binding(GO:0071949)
0.0 3.6 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.1 GO:0008515 sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0 3.3 GO:0008236 serine-type peptidase activity(GO:0008236)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 3.1 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.1 5.4 PID ATF2 PATHWAY ATF-2 transcription factor network
0.1 6.9 PID CMYB PATHWAY C-MYB transcription factor network
0.1 6.5 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 2.2 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.0 1.1 PID RHODOPSIN PATHWAY Visual signal transduction: Rods

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 11.3 REACTOME CRMPS IN SEMA3A SIGNALING Genes involved in CRMPs in Sema3A signaling
0.6 11.1 REACTOME TRAFFICKING OF GLUR2 CONTAINING AMPA RECEPTORS Genes involved in Trafficking of GluR2-containing AMPA receptors
0.6 6.1 REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT Genes involved in Organic cation/anion/zwitterion transport
0.2 5.4 REACTOME SYNTHESIS OF PC Genes involved in Synthesis of PC
0.2 6.9 REACTOME MYOGENESIS Genes involved in Myogenesis
0.1 2.4 REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS Genes involved in Proteolytic cleavage of SNARE complex proteins
0.1 2.3 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)
0.1 2.2 REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
0.1 1.8 REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)
0.1 2.5 REACTOME CYTOSOLIC TRNA AMINOACYLATION Genes involved in Cytosolic tRNA aminoacylation
0.1 13.5 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.1 1.7 REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline
0.0 8.9 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.0 1.6 REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS Genes involved in Class B/2 (Secretin family receptors)
0.0 0.2 REACTOME INSULIN SYNTHESIS AND PROCESSING Genes involved in Insulin Synthesis and Processing