GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nr2f6 | rn6_v1_chr16_-_19777414_19777414 | -0.10 | 8.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_219144205 Show fit | 24.96 |
ENSRNOT00000083942
|
unc-93 homolog B1 (C. elegans) |
|
chr1_+_215628785 Show fit | 21.13 |
ENSRNOT00000054864
|
lymphocyte-specific protein 1 |
|
chr1_+_100224401 Show fit | 21.07 |
ENSRNOT00000025846
|
Friend virus susceptibility 1 |
|
chrX_+_45420596 Show fit | 18.70 |
ENSRNOT00000051897
|
steroid sulfatase (microsomal), isozyme S |
|
chr2_-_225107283 Show fit | 18.42 |
ENSRNOT00000055711
|
solute carrier family 44, member 3 |
|
chr10_-_55965216 Show fit | 17.60 |
ENSRNOT00000057058
|
chromodomain helicase DNA binding protein 3 |
|
chr1_-_7480825 Show fit | 17.59 |
ENSRNOT00000048754
|
phosphatase and actin regulator 2 |
|
chr20_+_3351303 Show fit | 15.95 |
ENSRNOT00000080419
ENSRNOT00000001065 ENSRNOT00000086503 |
alpha tubulin acetyltransferase 1 |
|
chr7_+_11077411 Show fit | 15.87 |
ENSRNOT00000007117
|
sphingosine-1-phosphate receptor 4 |
|
chr1_+_226091774 Show fit | 15.71 |
ENSRNOT00000027693
|
fatty acid desaturase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 25.0 | GO:2001184 | toll-like receptor 7 signaling pathway(GO:0034154) positive regulation of interleukin-12 secretion(GO:2001184) |
3.4 | 23.6 | GO:0035338 | fatty acid elongation, monounsaturated fatty acid(GO:0034625) long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
2.6 | 20.4 | GO:1903232 | melanosome assembly(GO:1903232) |
0.3 | 18.7 | GO:0009268 | response to pH(GO:0009268) |
0.0 | 18.2 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.1 | 17.6 | GO:0006333 | chromatin assembly or disassembly(GO:0006333) |
5.3 | 15.9 | GO:0071929 | alpha-tubulin acetylation(GO:0071929) |
1.1 | 15.9 | GO:0003376 | sphingosine-1-phosphate signaling pathway(GO:0003376) |
1.4 | 14.9 | GO:0071578 | zinc II ion transmembrane import(GO:0071578) |
0.1 | 13.6 | GO:0060996 | dendritic spine development(GO:0060996) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 25.0 | GO:0032009 | early phagosome(GO:0032009) |
0.2 | 22.0 | GO:0005913 | cell-cell adherens junction(GO:0005913) |
4.1 | 20.4 | GO:0031085 | BLOC-3 complex(GO:0031085) |
0.8 | 17.6 | GO:0016581 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
4.0 | 15.9 | GO:0097427 | microtubule bundle(GO:0097427) |
0.8 | 14.9 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.0 | 13.2 | GO:0000139 | Golgi membrane(GO:0000139) |
0.2 | 12.6 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.0 | 12.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.3 | 11.8 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 39.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
1.0 | 29.5 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
1.8 | 25.0 | GO:0035325 | Toll-like receptor binding(GO:0035325) |
0.2 | 24.2 | GO:0070035 | ATP-dependent helicase activity(GO:0008026) purine NTP-dependent helicase activity(GO:0070035) |
2.4 | 23.6 | GO:0102338 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
1.0 | 22.0 | GO:0098641 | cadherin binding involved in cell-cell adhesion(GO:0098641) |
0.1 | 20.4 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
1.3 | 18.7 | GO:0008484 | sulfuric ester hydrolase activity(GO:0008484) |
0.1 | 18.3 | GO:0042826 | histone deacetylase binding(GO:0042826) |
2.3 | 15.9 | GO:0004468 | lysine N-acetyltransferase activity, acting on acetyl phosphate as donor(GO:0004468) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 33.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.3 | 25.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.7 | 21.6 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.8 | 21.1 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
1.1 | 15.9 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.1 | 13.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 12.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 10.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 7.9 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 5.3 | PID P73PATHWAY | p73 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 27.7 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
1.9 | 25.0 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
1.3 | 23.6 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
1.0 | 22.0 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |
1.9 | 18.7 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.7 | 18.4 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.8 | 14.9 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.2 | 11.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.3 | 10.8 | REACTOME IL RECEPTOR SHC SIGNALING | Genes involved in Interleukin receptor SHC signaling |
0.1 | 9.9 | REACTOME SIGNALING BY EGFR IN CANCER | Genes involved in Signaling by EGFR in Cancer |