GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nr2c1 | rn6_v1_chr7_+_35070284_35070284 | -0.35 | 1.7e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_11240138 Show fit | 47.39 |
ENSRNOT00000048687
|
sarcalumenin |
|
chr6_+_137184820 Show fit | 39.54 |
ENSRNOT00000073796
|
adenylosuccinate synthase like 1 |
|
chr19_-_56677084 Show fit | 34.54 |
ENSRNOT00000024084
|
actin, alpha 1, skeletal muscle |
|
chr8_-_84506328 Show fit | 28.27 |
ENSRNOT00000064754
|
muscular LMNA-interacting protein |
|
chr5_-_57372239 Show fit | 25.28 |
ENSRNOT00000012975
|
aquaporin 7 |
|
chr1_-_221917901 Show fit | 24.36 |
ENSRNOT00000092270
|
solute carrier family 22 member 12 |
|
chr9_-_115850634 Show fit | 23.90 |
ENSRNOT00000049720
|
leucine rich repeat containing 30 |
|
chr10_+_86337728 Show fit | 23.64 |
ENSRNOT00000085408
|
titin-cap |
|
chr10_+_71159869 Show fit | 20.82 |
ENSRNOT00000075977
ENSRNOT00000047427 |
HNF1 homeobox B |
|
chr9_+_65478496 Show fit | 20.82 |
ENSRNOT00000016060
|
NADH:ubiquinone oxidoreductase subunit B3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.5 | 58.2 | GO:0030240 | skeletal muscle thin filament assembly(GO:0030240) |
11.8 | 47.4 | GO:0014873 | response to muscle activity involved in regulation of muscle adaptation(GO:0014873) |
13.2 | 39.5 | GO:0044208 | 'de novo' AMP biosynthetic process(GO:0044208) |
1.0 | 28.3 | GO:0010614 | negative regulation of cardiac muscle hypertrophy(GO:0010614) |
5.1 | 25.3 | GO:0015793 | glycerol transport(GO:0015793) |
2.2 | 24.4 | GO:0015747 | urate transport(GO:0015747) |
1.1 | 21.7 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
6.9 | 20.8 | GO:0061215 | mesonephros morphogenesis(GO:0061206) mesonephric nephron development(GO:0061215) mesonephric nephron morphogenesis(GO:0061228) mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis(GO:0061235) regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis(GO:0061295) negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis(GO:0061296) mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis(GO:1901146) |
0.3 | 20.8 | GO:0022900 | electron transport chain(GO:0022900) |
6.4 | 19.1 | GO:0021539 | subthalamus development(GO:0021539) pulmonary vein morphogenesis(GO:0060577) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 75.4 | GO:0031526 | brush border membrane(GO:0031526) |
0.2 | 64.9 | GO:0005667 | transcription factor complex(GO:0005667) |
1.4 | 34.5 | GO:0005865 | striated muscle thin filament(GO:0005865) |
0.1 | 23.6 | GO:0030018 | Z disc(GO:0030018) |
1.1 | 21.7 | GO:0030056 | hemidesmosome(GO:0030056) |
0.4 | 20.8 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.2 | 20.8 | GO:0016605 | PML body(GO:0016605) |
1.1 | 16.1 | GO:0070469 | respiratory chain(GO:0070469) |
0.1 | 14.0 | GO:0005604 | basement membrane(GO:0005604) |
0.4 | 12.3 | GO:0070069 | cytochrome complex(GO:0070069) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 45.7 | GO:0005525 | GTP binding(GO:0005525) |
0.7 | 39.5 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
0.3 | 25.9 | GO:0001191 | transcriptional repressor activity, RNA polymerase II transcription factor binding(GO:0001191) |
8.4 | 25.3 | GO:0015254 | glycerol channel activity(GO:0015254) |
2.4 | 24.4 | GO:0015143 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
4.7 | 23.6 | GO:0051373 | FATZ binding(GO:0051373) |
0.6 | 21.7 | GO:0030506 | ankyrin binding(GO:0030506) |
0.2 | 20.8 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
0.4 | 19.1 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
0.0 | 17.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 34.5 | PID RHOA PATHWAY | RhoA signaling pathway |
0.5 | 24.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.6 | 19.1 | ST GAQ PATHWAY | G alpha q Pathway |
0.1 | 14.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 8.9 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 5.5 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 3.7 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 2.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.4 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.0 | 1.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.3 | 39.5 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.4 | 27.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
2.1 | 25.3 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.6 | 24.7 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |
2.2 | 24.4 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.6 | 23.6 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.6 | 18.8 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.4 | 17.0 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.2 | 12.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.8 | 11.8 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |