GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nfatc2 | rn6_v1_chr3_-_165360292_165360292 | -0.12 | 3.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_82533689 Show fit | 80.58 |
ENSRNOT00000014124
|
tropomodulin 2 |
|
chrX_+_6791136 Show fit | 63.06 |
ENSRNOT00000003984
|
norrin-like |
|
chr2_+_58448917 Show fit | 51.66 |
ENSRNOT00000082562
|
RAN binding protein 3-like |
|
chr17_-_81187739 Show fit | 46.59 |
ENSRNOT00000063911
|
3-hydroxyacyl-CoA dehydratase 1 |
|
chr5_+_64294321 Show fit | 46.32 |
ENSRNOT00000083796
|
Myb/SANT DNA binding domain containing 3 |
|
chr4_-_29778039 Show fit | 46.30 |
ENSRNOT00000074177
|
sarcoglycan, epsilon |
|
chrX_+_107323215 Show fit | 45.94 |
ENSRNOT00000071874
|
transcription elongation factor A like 3 |
|
chr2_-_102370757 Show fit | 44.65 |
ENSRNOT00000074255
|
transcription elongation factor A (SII)-like 6 |
|
chr9_-_32019205 Show fit | 44.32 |
ENSRNOT00000016194
|
adhesion G protein-coupled receptor B3 |
|
chr3_-_48535909 Show fit | 43.64 |
ENSRNOT00000008148
|
fibroblast activation protein, alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 464.7 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.5 | 88.7 | GO:0060070 | canonical Wnt signaling pathway(GO:0060070) |
10.1 | 80.6 | GO:0051694 | pointed-end actin filament capping(GO:0051694) |
24.2 | 72.6 | GO:0097325 | melanocyte proliferation(GO:0097325) |
0.3 | 65.7 | GO:0001822 | kidney development(GO:0001822) |
9.6 | 57.4 | GO:1901843 | membrane depolarization during bundle of His cell action potential(GO:0086048) positive regulation of high voltage-gated calcium channel activity(GO:1901843) |
16.1 | 48.3 | GO:0072254 | metanephric mesangial cell differentiation(GO:0072209) metanephric glomerular mesangial cell differentiation(GO:0072254) |
15.5 | 46.6 | GO:0071529 | cementum mineralization(GO:0071529) |
8.9 | 44.3 | GO:0061743 | motor learning(GO:0061743) |
7.2 | 43.0 | GO:0033227 | dsRNA transport(GO:0033227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 441.4 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.4 | 121.8 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
12.4 | 87.0 | GO:0071438 | invadopodium membrane(GO:0071438) |
0.4 | 76.0 | GO:0030427 | site of polarized growth(GO:0030427) |
1.9 | 69.8 | GO:0046930 | pore complex(GO:0046930) |
10.7 | 64.0 | GO:0016012 | sarcoglycan complex(GO:0016012) |
4.8 | 57.4 | GO:1990454 | L-type voltage-gated calcium channel complex(GO:1990454) |
0.4 | 57.0 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.3 | 54.4 | GO:0031012 | extracellular matrix(GO:0031012) |
4.5 | 53.5 | GO:0098839 | postsynaptic density membrane(GO:0098839) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 565.6 | GO:0005509 | calcium ion binding(GO:0005509) |
5.0 | 89.5 | GO:0005523 | tropomyosin binding(GO:0005523) |
1.2 | 83.1 | GO:0005518 | collagen binding(GO:0005518) |
7.3 | 72.6 | GO:0008239 | dipeptidyl-peptidase activity(GO:0008239) |
1.1 | 63.8 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.7 | 63.8 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
0.6 | 63.4 | GO:0016503 | pheromone receptor activity(GO:0016503) |
19.1 | 57.4 | GO:0086057 | voltage-gated calcium channel activity involved in bundle of His cell action potential(GO:0086057) |
15.5 | 46.6 | GO:0102344 | 3-hydroxy-behenoyl-CoA dehydratase activity(GO:0102344) 3-hydroxy-lignoceroyl-CoA dehydratase activity(GO:0102345) |
0.2 | 44.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 120.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
2.4 | 115.8 | NABA COLLAGENS | Genes encoding collagen proteins |
1.2 | 54.9 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.8 | 54.9 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
1.1 | 45.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
1.2 | 43.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.5 | 43.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.7 | 32.9 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
1.7 | 30.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.7 | 28.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 119.2 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
1.7 | 48.1 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
1.7 | 47.7 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
3.4 | 47.0 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.6 | 44.6 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
2.4 | 42.6 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
1.0 | 39.8 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |
1.0 | 37.4 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.4 | 35.8 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
2.2 | 33.2 | REACTOME ADENYLATE CYCLASE ACTIVATING PATHWAY | Genes involved in Adenylate cyclase activating pathway |