GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nanog | rn6_v1_chr4_+_155531906_155531906 | -0.25 | 6.8e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_9762813 Show fit | 32.00 |
ENSRNOT00000033749
|
solute carrier family 34 member 1 |
|
chr3_+_117421604 Show fit | 22.23 |
ENSRNOT00000008860
ENSRNOT00000008857 |
solute carrier family 12 member 1 |
|
chr13_+_44424689 Show fit | 20.64 |
ENSRNOT00000005206
|
aminocarboxymuconate semialdehyde decarboxylase |
|
chr5_+_33784715 Show fit | 18.18 |
ENSRNOT00000035685
|
solute carrier family 7 member 13 |
|
chr10_+_49231730 Show fit | 17.00 |
ENSRNOT00000065335
|
tripartite motif-containing 16 |
|
chr17_+_69468427 Show fit | 16.45 |
ENSRNOT00000058413
|
similar to 20-alpha-hydroxysteroid dehydrogenase |
|
chr1_-_224533219 Show fit | 14.80 |
ENSRNOT00000051289
|
integral membrane transport protein UST5r |
|
chr7_+_29435444 Show fit | 14.51 |
ENSRNOT00000008613
|
solute carrier family 5 member 8 |
|
chr6_+_76349362 Show fit | 14.01 |
ENSRNOT00000043224
|
aldolase 1 A retrogene 2 |
|
chr20_+_26999795 Show fit | 13.61 |
ENSRNOT00000057872
|
myopalladin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 227.9 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
10.7 | 32.0 | GO:0097187 | dentinogenesis(GO:0097187) regulation of sodium-dependent phosphate transport(GO:2000118) |
7.4 | 22.2 | GO:0032978 | protein insertion into membrane from inner side(GO:0032978) |
0.6 | 22.1 | GO:1902475 | L-alpha-amino acid transmembrane transport(GO:1902475) |
0.2 | 21.1 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
3.4 | 20.6 | GO:0046874 | quinolinate metabolic process(GO:0046874) |
2.8 | 17.0 | GO:0048386 | positive regulation of retinoic acid receptor signaling pathway(GO:0048386) |
0.5 | 14.3 | GO:0010758 | regulation of macrophage chemotaxis(GO:0010758) |
0.1 | 13.7 | GO:0007606 | sensory perception of chemical stimulus(GO:0007606) |
1.1 | 13.6 | GO:0048739 | cardiac muscle fiber development(GO:0048739) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 124.9 | GO:0016021 | integral component of membrane(GO:0016021) |
0.1 | 32.2 | GO:0045177 | apical part of cell(GO:0045177) |
0.4 | 32.0 | GO:0031526 | brush border membrane(GO:0031526) |
0.2 | 17.6 | GO:0016605 | PML body(GO:0016605) |
1.0 | 17.2 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.0 | 16.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.4 | 14.1 | GO:0043034 | costamere(GO:0043034) |
1.3 | 13.2 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.1 | 12.1 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
2.8 | 11.2 | GO:0097451 | glial limiting end-foot(GO:0097451) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 227.9 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.4 | 34.3 | GO:0015297 | antiporter activity(GO:0015297) |
6.4 | 32.0 | GO:0015321 | sodium-dependent phosphate transmembrane transporter activity(GO:0015321) |
0.5 | 22.6 | GO:0030507 | spectrin binding(GO:0030507) |
7.4 | 22.2 | GO:0008511 | sodium:potassium:chloride symporter activity(GO:0008511) |
0.5 | 21.2 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.6 | 17.2 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
1.4 | 17.0 | GO:0019966 | interleukin-1 binding(GO:0019966) |
0.5 | 14.1 | GO:0004707 | MAP kinase activity(GO:0004707) |
2.0 | 14.0 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.3 | 12.0 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.3 | 11.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.2 | 7.7 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 7.1 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 6.0 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.4 | 5.3 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 5.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 4.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 3.3 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 89.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
2.3 | 20.6 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.6 | 17.7 | REACTOME NITRIC OXIDE STIMULATES GUANYLATE CYCLASE | Genes involved in Nitric oxide stimulates guanylate cyclase |
0.2 | 11.5 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.3 | 11.4 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.4 | 10.9 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
1.0 | 9.6 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.6 | 7.8 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
0.3 | 7.5 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.1 | 7.1 | REACTOME SIGNALING BY FGFR | Genes involved in Signaling by FGFR |