GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Mybl1 | rn6_v1_chr5_+_9279970_9279970 | 0.42 | 4.3e-15 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_62158327 Show fit | 63.26 |
ENSRNOT00000075053
|
coiled-coil domain containing 7 |
|
chr16_+_72086878 Show fit | 62.59 |
ENSRNOT00000023756
ENSRNOT00000078085 |
ADAM metallopeptidase domain 3A |
|
chr8_-_115263484 Show fit | 61.91 |
ENSRNOT00000039696
ENSRNOT00000081138 |
IQ motif containing F3 |
|
chr2_-_187668677 Show fit | 61.76 |
ENSRNOT00000056898
ENSRNOT00000092563 |
TSSK6 activating co-chaperone |
|
chr15_-_42751330 Show fit | 59.70 |
ENSRNOT00000066478
|
ADAM metallopeptidase domain 2 |
|
chr9_-_104467973 Show fit | 59.21 |
ENSRNOT00000026099
|
solute carrier organic anion transporter family member 6B1 |
|
chr1_-_81295442 Show fit | 59.02 |
ENSRNOT00000030900
|
immunity related GTPase cinema |
|
chr17_+_14469488 Show fit | 55.78 |
ENSRNOT00000060670
|
|
|
chr3_-_176144531 Show fit | 53.91 |
ENSRNOT00000082266
|
transcription factor like 5 |
|
chr3_+_108544931 Show fit | 50.35 |
ENSRNOT00000006809
|
transmembrane and coiled-coil domains 5A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 246.4 | GO:0007283 | spermatogenesis(GO:0007283) |
4.0 | 157.0 | GO:0035036 | sperm-egg recognition(GO:0035036) |
7.3 | 123.5 | GO:0034587 | piRNA metabolic process(GO:0034587) |
0.8 | 97.8 | GO:0009566 | fertilization(GO:0009566) |
4.1 | 73.3 | GO:0035404 | histone-serine phosphorylation(GO:0035404) |
1.6 | 71.8 | GO:0051310 | metaphase plate congression(GO:0051310) |
2.7 | 68.4 | GO:0048240 | sperm capacitation(GO:0048240) |
2.1 | 59.5 | GO:0044458 | motile cilium assembly(GO:0044458) |
0.8 | 57.2 | GO:0006405 | RNA export from nucleus(GO:0006405) |
3.5 | 46.0 | GO:0098719 | sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 178.1 | GO:0031514 | motile cilium(GO:0031514) |
2.5 | 163.4 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
1.3 | 151.5 | GO:0001669 | acrosomal vesicle(GO:0001669) |
0.9 | 84.4 | GO:0036064 | ciliary basal body(GO:0036064) |
4.1 | 73.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
3.6 | 64.0 | GO:0001741 | XY body(GO:0001741) |
8.8 | 61.3 | GO:0036128 | CatSper complex(GO:0036128) |
2.7 | 58.8 | GO:0001673 | male germ cell nucleus(GO:0001673) |
9.4 | 56.5 | GO:0071547 | piP-body(GO:0071547) |
0.6 | 55.3 | GO:0000786 | nucleosome(GO:0000786) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 190.2 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
5.3 | 85.3 | GO:0035174 | histone serine kinase activity(GO:0035174) |
1.0 | 84.3 | GO:0051087 | chaperone binding(GO:0051087) |
0.5 | 78.2 | GO:0005179 | hormone activity(GO:0005179) |
3.1 | 62.8 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.4 | 59.5 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.6 | 50.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
4.6 | 46.0 | GO:0015386 | potassium:proton antiporter activity(GO:0015386) |
0.2 | 45.7 | GO:0003924 | GTPase activity(GO:0003924) |
15.1 | 45.4 | GO:0004370 | glycerol kinase activity(GO:0004370) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 110.0 | PID AURORA B PATHWAY | Aurora B signaling |
1.5 | 71.8 | PID PLK1 PATHWAY | PLK1 signaling events |
1.5 | 55.3 | PID BARD1 PATHWAY | BARD1 signaling events |
1.7 | 53.2 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.8 | 25.5 | PID MYC PATHWAY | C-MYC pathway |
0.5 | 22.8 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.5 | 19.0 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.3 | 18.6 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.5 | 15.7 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.2 | 9.9 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 88.0 | REACTOME KINESINS | Genes involved in Kinesins |
0.9 | 69.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
1.0 | 63.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
1.0 | 56.0 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
4.4 | 44.3 | REACTOME REGULATION OF THE FANCONI ANEMIA PATHWAY | Genes involved in Regulation of the Fanconi anemia pathway |
0.3 | 44.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.3 | 32.8 | REACTOME G ALPHA S SIGNALLING EVENTS | Genes involved in G alpha (s) signalling events |
1.6 | 28.0 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |
2.3 | 27.3 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.5 | 23.5 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |