GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Meox2 | rn6_v1_chr6_+_56625650_56625650 | 0.45 | 1.1e-17 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chrM_+_10160 Show fit | 40.99 |
ENSRNOT00000042928
|
mitochondrially encoded NADH dehydrogenase 4 |
|
chr4_-_129619142 Show fit | 40.86 |
ENSRNOT00000047453
|
leiomodin 3 |
|
chrM_+_9870 Show fit | 39.03 |
ENSRNOT00000044582
|
mitochondrially encoded NADH 4L dehydrogenase |
|
chr2_+_248398917 Show fit | 31.70 |
ENSRNOT00000045855
|
guanylate binding protein 1 |
|
chr5_+_6373583 Show fit | 31.69 |
ENSRNOT00000084749
|
|
|
chr10_+_53713938 Show fit | 31.51 |
ENSRNOT00000004236
ENSRNOT00000086599 ENSRNOT00000085582 |
myosin heavy chain 2 |
|
chr6_-_143065639 Show fit | 28.27 |
ENSRNOT00000070923
|
|
|
chrM_+_9451 Show fit | 27.52 |
ENSRNOT00000041241
|
mitochondrially encoded NADH dehydrogenase 3 |
|
chr3_+_16846412 Show fit | 25.85 |
ENSRNOT00000074266
|
|
|
chrX_-_64715823 Show fit | 22.47 |
ENSRNOT00000076297
|
ankyrin repeat and SOCS box-containing 12 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 336.9 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
1.6 | 62.1 | GO:0042773 | ATP synthesis coupled electron transport(GO:0042773) |
2.1 | 49.0 | GO:0006120 | mitochondrial electron transport, NADH to ubiquinone(GO:0006120) |
0.1 | 45.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
5.1 | 40.9 | GO:0051694 | pointed-end actin filament capping(GO:0051694) |
0.5 | 39.2 | GO:0050909 | sensory perception of taste(GO:0050909) |
5.3 | 31.7 | GO:1900041 | negative regulation of interleukin-2 secretion(GO:1900041) |
2.4 | 31.5 | GO:0001778 | plasma membrane repair(GO:0001778) |
1.9 | 28.3 | GO:0009642 | response to light intensity(GO:0009642) |
0.1 | 22.2 | GO:0006869 | lipid transport(GO:0006869) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.0 | 152.4 | GO:0030964 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 135.3 | GO:0016021 | integral component of membrane(GO:0016021) |
0.0 | 36.0 | GO:0005739 | mitochondrion(GO:0005739) |
0.6 | 33.3 | GO:0031672 | A band(GO:0031672) |
7.9 | 31.7 | GO:0020005 | symbiont-containing vacuole membrane(GO:0020005) |
3.5 | 31.5 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.9 | 21.9 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
1.2 | 21.2 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
1.2 | 19.8 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
1.3 | 19.4 | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 197.3 | GO:0005549 | odorant binding(GO:0005549) |
5.2 | 145.9 | GO:0003954 | NADH dehydrogenase activity(GO:0003954) |
0.2 | 140.9 | GO:0004984 | olfactory receptor activity(GO:0004984) |
2.7 | 40.9 | GO:0005523 | tropomyosin binding(GO:0005523) |
7.9 | 31.7 | GO:0019002 | GMP binding(GO:0019002) |
2.4 | 26.1 | GO:0004875 | complement receptor activity(GO:0004875) |
7.7 | 23.0 | GO:0004466 | long-chain-acyl-CoA dehydrogenase activity(GO:0004466) |
3.5 | 21.2 | GO:0035473 | lipase binding(GO:0035473) |
0.1 | 20.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.7 | 19.8 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 26.6 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.2 | 13.5 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.2 | 13.1 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
0.1 | 11.0 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 9.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.3 | 8.4 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.3 | 8.4 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.2 | 7.6 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.1 | 5.9 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.1 | 4.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 44.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.6 | 40.9 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.5 | 30.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
1.5 | 20.9 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.3 | 14.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.5 | 14.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.8 | 12.7 | REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING | Genes involved in Formation of ATP by chemiosmotic coupling |
0.2 | 12.4 | REACTOME CELL SURFACE INTERACTIONS AT THE VASCULAR WALL | Genes involved in Cell surface interactions at the vascular wall |
0.2 | 12.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.8 | 11.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |